data_4XZ6
#
_model_server_result.job_id            i65arCYLS0C9ETizlkGpsw 
_model_server_result.datetime_utc      '2024-11-08 12:53:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    4XZ6 
#
_exptl.entry_id    4XZ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.15 
_cell.angle_gamma         90 
_cell.entry_id            4XZ6 
_cell.length_a            29.624 
_cell.length_b            134.979 
_cell.length_c            58.366 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 143 A CYS 143 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf3 B SG CYS 143 B CYS 143 1_555 B SG CYS 155 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 245 B CYS 245 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A O PRO 249 A PRO 249 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc2 A O VAL 251 A VAL 251 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc3 A O ASN 254 A ASN 254 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc4 A O ALA 257 A ALA 257 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc5 A OD1 ASP 260 A ASP 260 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc6 A OD2 ASP 260 A ASP 260 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc7 D CA CA . A CA 402 1_555 J O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc8 B O PRO 249 B PRO 249 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc9 B O VAL 251 B VAL 251 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc10 B O ASN 254 B ASN 254 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc11 B O ALA 257 B ALA 257 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc12 B OD1 ASP 260 B ASP 260 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc13 B OD2 ASP 260 B ASP 260 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc14 H CA CA . B CA 402 1_555 K O HOH . B HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4XZ6 
_atom_sites.fract_transf_matrix[1][1]    0.033756 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00009 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007409 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TMO A 1 401 401 TMO TMO . 
D 3 CA A 1 402 402 CA CA . 
E 4 GOL A 1 403 403 GOL GOL . 
F 4 GOL A 1 404 404 GOL GOL . 
G 2 TMO B 1 401 401 TMO TMO . 
H 3 CA B 1 402 402 CA CA . 
I 5 TRS B 1 403 403 TRS TRS . 
J 6 HOH A 1 501 501 HOH HOH . 
J 6 HOH A 2 502 502 HOH HOH . 
J 6 HOH A 3 503 503 HOH HOH . 
J 6 HOH A 4 504 504 HOH HOH . 
J 6 HOH A 5 505 505 HOH HOH . 
J 6 HOH A 6 506 506 HOH HOH . 
J 6 HOH A 7 507 507 HOH HOH . 
J 6 HOH A 8 508 508 HOH HOH . 
J 6 HOH A 9 509 509 HOH HOH . 
J 6 HOH A 10 510 510 HOH HOH . 
J 6 HOH A 11 511 511 HOH HOH . 
J 6 HOH A 12 512 512 HOH HOH . 
J 6 HOH A 13 513 513 HOH HOH . 
J 6 HOH A 14 514 514 HOH HOH . 
J 6 HOH A 15 515 515 HOH HOH . 
J 6 HOH A 16 516 516 HOH HOH . 
J 6 HOH A 17 517 517 HOH HOH . 
J 6 HOH A 18 518 518 HOH HOH . 
J 6 HOH A 19 519 519 HOH HOH . 
J 6 HOH A 20 520 520 HOH HOH . 
J 6 HOH A 21 521 521 HOH HOH . 
J 6 HOH A 22 522 522 HOH HOH . 
J 6 HOH A 23 523 523 HOH HOH . 
J 6 HOH A 24 524 524 HOH HOH . 
J 6 HOH A 25 525 525 HOH HOH . 
J 6 HOH A 26 526 526 HOH HOH . 
J 6 HOH A 27 527 527 HOH HOH . 
J 6 HOH A 28 528 528 HOH HOH . 
J 6 HOH A 29 529 529 HOH HOH . 
J 6 HOH A 30 530 530 HOH HOH . 
J 6 HOH A 31 531 531 HOH HOH . 
J 6 HOH A 32 532 532 HOH HOH . 
J 6 HOH A 33 533 533 HOH HOH . 
J 6 HOH A 34 534 534 HOH HOH . 
J 6 HOH A 35 535 535 HOH HOH . 
J 6 HOH A 36 536 536 HOH HOH . 
J 6 HOH A 37 537 537 HOH HOH . 
J 6 HOH A 38 538 538 HOH HOH . 
J 6 HOH A 39 539 539 HOH HOH . 
J 6 HOH A 40 540 540 HOH HOH . 
J 6 HOH A 41 541 541 HOH HOH . 
J 6 HOH A 42 542 542 HOH HOH . 
J 6 HOH A 43 543 543 HOH HOH . 
J 6 HOH A 44 544 544 HOH HOH . 
J 6 HOH A 45 545 545 HOH HOH . 
J 6 HOH A 46 546 546 HOH HOH . 
J 6 HOH A 47 547 547 HOH HOH . 
J 6 HOH A 48 548 548 HOH HOH . 
J 6 HOH A 49 549 549 HOH HOH . 
J 6 HOH A 50 550 550 HOH HOH . 
J 6 HOH A 51 551 551 HOH HOH . 
J 6 HOH A 52 552 552 HOH HOH . 
J 6 HOH A 53 553 553 HOH HOH . 
J 6 HOH A 54 554 554 HOH HOH . 
J 6 HOH A 55 555 555 HOH HOH . 
J 6 HOH A 56 556 556 HOH HOH . 
J 6 HOH A 57 557 557 HOH HOH . 
J 6 HOH A 58 558 558 HOH HOH . 
J 6 HOH A 59 559 559 HOH HOH . 
J 6 HOH A 60 560 560 HOH HOH . 
J 6 HOH A 61 561 561 HOH HOH . 
J 6 HOH A 62 562 562 HOH HOH . 
J 6 HOH A 63 563 563 HOH HOH . 
J 6 HOH A 64 564 564 HOH HOH . 
J 6 HOH A 65 565 565 HOH HOH . 
J 6 HOH A 66 566 566 HOH HOH . 
J 6 HOH A 67 567 567 HOH HOH . 
J 6 HOH A 68 568 568 HOH HOH . 
J 6 HOH A 69 569 569 HOH HOH . 
J 6 HOH A 70 570 570 HOH HOH . 
J 6 HOH A 71 571 571 HOH HOH . 
J 6 HOH A 72 572 572 HOH HOH . 
J 6 HOH A 73 573 573 HOH HOH . 
J 6 HOH A 74 574 574 HOH HOH . 
J 6 HOH A 75 575 575 HOH HOH . 
J 6 HOH A 76 576 576 HOH HOH . 
J 6 HOH A 77 577 577 HOH HOH . 
J 6 HOH A 78 578 578 HOH HOH . 
J 6 HOH A 79 579 579 HOH HOH . 
K 6 HOH B 1 501 501 HOH HOH . 
K 6 HOH B 2 502 502 HOH HOH . 
K 6 HOH B 3 503 503 HOH HOH . 
K 6 HOH B 4 504 504 HOH HOH . 
K 6 HOH B 5 505 505 HOH HOH . 
K 6 HOH B 6 506 506 HOH HOH . 
K 6 HOH B 7 507 507 HOH HOH . 
K 6 HOH B 8 508 508 HOH HOH . 
K 6 HOH B 9 509 509 HOH HOH . 
K 6 HOH B 10 510 510 HOH HOH . 
K 6 HOH B 11 511 511 HOH HOH . 
K 6 HOH B 12 512 512 HOH HOH . 
K 6 HOH B 13 513 513 HOH HOH . 
K 6 HOH B 14 514 514 HOH HOH . 
K 6 HOH B 15 515 515 HOH HOH . 
K 6 HOH B 16 516 516 HOH HOH . 
K 6 HOH B 17 517 517 HOH HOH . 
K 6 HOH B 18 518 518 HOH HOH . 
K 6 HOH B 19 519 519 HOH HOH . 
K 6 HOH B 20 520 520 HOH HOH . 
K 6 HOH B 21 521 521 HOH HOH . 
K 6 HOH B 22 522 522 HOH HOH . 
K 6 HOH B 23 523 523 HOH HOH . 
K 6 HOH B 24 524 524 HOH HOH . 
K 6 HOH B 25 525 525 HOH HOH . 
K 6 HOH B 26 526 526 HOH HOH . 
K 6 HOH B 27 527 527 HOH HOH . 
K 6 HOH B 28 528 528 HOH HOH . 
K 6 HOH B 29 529 529 HOH HOH . 
K 6 HOH B 30 530 530 HOH HOH . 
K 6 HOH B 31 531 531 HOH HOH . 
K 6 HOH B 32 532 532 HOH HOH . 
K 6 HOH B 33 533 533 HOH HOH . 
K 6 HOH B 34 534 534 HOH HOH . 
K 6 HOH B 35 535 535 HOH HOH . 
K 6 HOH B 36 536 536 HOH HOH . 
K 6 HOH B 37 537 537 HOH HOH . 
K 6 HOH B 38 538 538 HOH HOH . 
K 6 HOH B 39 539 539 HOH HOH . 
K 6 HOH B 40 540 540 HOH HOH . 
K 6 HOH B 41 541 541 HOH HOH . 
K 6 HOH B 42 542 542 HOH HOH . 
K 6 HOH B 43 543 543 HOH HOH . 
K 6 HOH B 44 544 544 HOH HOH . 
K 6 HOH B 45 545 545 HOH HOH . 
K 6 HOH B 46 546 546 HOH HOH . 
K 6 HOH B 47 547 547 HOH HOH . 
K 6 HOH B 48 548 548 HOH HOH . 
K 6 HOH B 49 549 549 HOH HOH . 
K 6 HOH B 50 550 550 HOH HOH . 
K 6 HOH B 51 551 551 HOH HOH . 
K 6 HOH B 52 552 552 HOH HOH . 
K 6 HOH B 53 553 553 HOH HOH . 
K 6 HOH B 54 554 554 HOH HOH . 
K 6 HOH B 55 555 555 HOH HOH . 
K 6 HOH B 56 556 556 HOH HOH . 
K 6 HOH B 57 557 557 HOH HOH . 
K 6 HOH B 58 558 558 HOH HOH . 
K 6 HOH B 59 559 559 HOH HOH . 
K 6 HOH B 60 560 560 HOH HOH . 
K 6 HOH B 61 561 561 HOH HOH . 
K 6 HOH B 62 562 562 HOH HOH . 
K 6 HOH B 63 563 563 HOH HOH . 
K 6 HOH B 64 564 564 HOH HOH . 
K 6 HOH B 65 565 565 HOH HOH . 
K 6 HOH B 66 566 566 HOH HOH . 
K 6 HOH B 67 567 567 HOH HOH . 
K 6 HOH B 68 568 568 HOH HOH . 
K 6 HOH B 69 569 569 HOH HOH . 
K 6 HOH B 70 570 570 HOH HOH . 
K 6 HOH B 71 571 571 HOH HOH . 
K 6 HOH B 72 572 572 HOH HOH . 
K 6 HOH B 73 573 573 HOH HOH . 
K 6 HOH B 74 574 574 HOH HOH . 
K 6 HOH B 75 575 575 HOH HOH . 
K 6 HOH B 76 576 576 HOH HOH . 
K 6 HOH B 77 577 577 HOH HOH . 
K 6 HOH B 78 578 578 HOH HOH . 
K 6 HOH B 79 579 579 HOH HOH . 
K 6 HOH B 80 580 580 HOH HOH . 
K 6 HOH B 81 581 581 HOH HOH . 
K 6 HOH B 82 582 582 HOH HOH . 
K 6 HOH B 83 583 583 HOH HOH . 
K 6 HOH B 84 584 584 HOH HOH . 
K 6 HOH B 85 585 585 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -9.01 -9.8 22.916 1 46.43 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . E 4 -9.858 -9.714 24.054 1 33.67 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . E 4 -7.639 -10.373 23.29 1 47.47 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . E 4 -7.205 -11.312 22.315 1 42.26 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . E 4 -7.781 -11.077 24.638 1 44.11 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . E 4 -8.769 -12.082 24.521 1 50.93 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#