data_4XZ6 # _model_server_result.job_id kiM-CaWvMDfnxUGhLGJpcQ _model_server_result.datetime_utc '2024-11-08 12:54:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 4XZ6 # _exptl.entry_id 4XZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.15 _cell.angle_gamma 90 _cell.entry_id 4XZ6 _cell.length_a 29.624 _cell.length_b 134.979 _cell.length_c 58.366 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 143 A CYS 143 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 245 A CYS 245 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 B SG CYS 143 B CYS 143 1_555 B SG CYS 155 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 245 B CYS 245 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A O PRO 249 A PRO 249 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc2 A O VAL 251 A VAL 251 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 A O ASN 254 A ASN 254 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc4 A O ALA 257 A ALA 257 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 A OD1 ASP 260 A ASP 260 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc6 A OD2 ASP 260 A ASP 260 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc7 D CA CA . A CA 402 1_555 J O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc8 B O PRO 249 B PRO 249 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc9 B O VAL 251 B VAL 251 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc10 B O ASN 254 B ASN 254 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc11 B O ALA 257 B ALA 257 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc12 B OD1 ASP 260 B ASP 260 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc13 B OD2 ASP 260 B ASP 260 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc14 H CA CA . B CA 402 1_555 K O HOH . B HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4XZ6 _atom_sites.fract_transf_matrix[1][1] 0.033756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TMO A 1 401 401 TMO TMO . D 3 CA A 1 402 402 CA CA . E 4 GOL A 1 403 403 GOL GOL . F 4 GOL A 1 404 404 GOL GOL . G 2 TMO B 1 401 401 TMO TMO . H 3 CA B 1 402 402 CA CA . I 5 TRS B 1 403 403 TRS TRS . J 6 HOH A 1 501 501 HOH HOH . J 6 HOH A 2 502 502 HOH HOH . J 6 HOH A 3 503 503 HOH HOH . J 6 HOH A 4 504 504 HOH HOH . J 6 HOH A 5 505 505 HOH HOH . J 6 HOH A 6 506 506 HOH HOH . J 6 HOH A 7 507 507 HOH HOH . J 6 HOH A 8 508 508 HOH HOH . J 6 HOH A 9 509 509 HOH HOH . J 6 HOH A 10 510 510 HOH HOH . J 6 HOH A 11 511 511 HOH HOH . J 6 HOH A 12 512 512 HOH HOH . J 6 HOH A 13 513 513 HOH HOH . J 6 HOH A 14 514 514 HOH HOH . J 6 HOH A 15 515 515 HOH HOH . J 6 HOH A 16 516 516 HOH HOH . J 6 HOH A 17 517 517 HOH HOH . J 6 HOH A 18 518 518 HOH HOH . J 6 HOH A 19 519 519 HOH HOH . J 6 HOH A 20 520 520 HOH HOH . J 6 HOH A 21 521 521 HOH HOH . J 6 HOH A 22 522 522 HOH HOH . J 6 HOH A 23 523 523 HOH HOH . J 6 HOH A 24 524 524 HOH HOH . J 6 HOH A 25 525 525 HOH HOH . J 6 HOH A 26 526 526 HOH HOH . J 6 HOH A 27 527 527 HOH HOH . J 6 HOH A 28 528 528 HOH HOH . J 6 HOH A 29 529 529 HOH HOH . J 6 HOH A 30 530 530 HOH HOH . J 6 HOH A 31 531 531 HOH HOH . J 6 HOH A 32 532 532 HOH HOH . J 6 HOH A 33 533 533 HOH HOH . J 6 HOH A 34 534 534 HOH HOH . J 6 HOH A 35 535 535 HOH HOH . J 6 HOH A 36 536 536 HOH HOH . J 6 HOH A 37 537 537 HOH HOH . J 6 HOH A 38 538 538 HOH HOH . J 6 HOH A 39 539 539 HOH HOH . J 6 HOH A 40 540 540 HOH HOH . J 6 HOH A 41 541 541 HOH HOH . J 6 HOH A 42 542 542 HOH HOH . J 6 HOH A 43 543 543 HOH HOH . J 6 HOH A 44 544 544 HOH HOH . J 6 HOH A 45 545 545 HOH HOH . J 6 HOH A 46 546 546 HOH HOH . J 6 HOH A 47 547 547 HOH HOH . J 6 HOH A 48 548 548 HOH HOH . J 6 HOH A 49 549 549 HOH HOH . J 6 HOH A 50 550 550 HOH HOH . J 6 HOH A 51 551 551 HOH HOH . J 6 HOH A 52 552 552 HOH HOH . J 6 HOH A 53 553 553 HOH HOH . J 6 HOH A 54 554 554 HOH HOH . J 6 HOH A 55 555 555 HOH HOH . J 6 HOH A 56 556 556 HOH HOH . J 6 HOH A 57 557 557 HOH HOH . J 6 HOH A 58 558 558 HOH HOH . J 6 HOH A 59 559 559 HOH HOH . J 6 HOH A 60 560 560 HOH HOH . J 6 HOH A 61 561 561 HOH HOH . J 6 HOH A 62 562 562 HOH HOH . J 6 HOH A 63 563 563 HOH HOH . J 6 HOH A 64 564 564 HOH HOH . J 6 HOH A 65 565 565 HOH HOH . J 6 HOH A 66 566 566 HOH HOH . J 6 HOH A 67 567 567 HOH HOH . J 6 HOH A 68 568 568 HOH HOH . J 6 HOH A 69 569 569 HOH HOH . J 6 HOH A 70 570 570 HOH HOH . J 6 HOH A 71 571 571 HOH HOH . J 6 HOH A 72 572 572 HOH HOH . J 6 HOH A 73 573 573 HOH HOH . J 6 HOH A 74 574 574 HOH HOH . J 6 HOH A 75 575 575 HOH HOH . J 6 HOH A 76 576 576 HOH HOH . J 6 HOH A 77 577 577 HOH HOH . J 6 HOH A 78 578 578 HOH HOH . J 6 HOH A 79 579 579 HOH HOH . K 6 HOH B 1 501 501 HOH HOH . K 6 HOH B 2 502 502 HOH HOH . K 6 HOH B 3 503 503 HOH HOH . K 6 HOH B 4 504 504 HOH HOH . K 6 HOH B 5 505 505 HOH HOH . K 6 HOH B 6 506 506 HOH HOH . K 6 HOH B 7 507 507 HOH HOH . K 6 HOH B 8 508 508 HOH HOH . K 6 HOH B 9 509 509 HOH HOH . K 6 HOH B 10 510 510 HOH HOH . K 6 HOH B 11 511 511 HOH HOH . K 6 HOH B 12 512 512 HOH HOH . K 6 HOH B 13 513 513 HOH HOH . K 6 HOH B 14 514 514 HOH HOH . K 6 HOH B 15 515 515 HOH HOH . K 6 HOH B 16 516 516 HOH HOH . K 6 HOH B 17 517 517 HOH HOH . K 6 HOH B 18 518 518 HOH HOH . K 6 HOH B 19 519 519 HOH HOH . K 6 HOH B 20 520 520 HOH HOH . K 6 HOH B 21 521 521 HOH HOH . K 6 HOH B 22 522 522 HOH HOH . K 6 HOH B 23 523 523 HOH HOH . K 6 HOH B 24 524 524 HOH HOH . K 6 HOH B 25 525 525 HOH HOH . K 6 HOH B 26 526 526 HOH HOH . K 6 HOH B 27 527 527 HOH HOH . K 6 HOH B 28 528 528 HOH HOH . K 6 HOH B 29 529 529 HOH HOH . K 6 HOH B 30 530 530 HOH HOH . K 6 HOH B 31 531 531 HOH HOH . K 6 HOH B 32 532 532 HOH HOH . K 6 HOH B 33 533 533 HOH HOH . K 6 HOH B 34 534 534 HOH HOH . K 6 HOH B 35 535 535 HOH HOH . K 6 HOH B 36 536 536 HOH HOH . K 6 HOH B 37 537 537 HOH HOH . K 6 HOH B 38 538 538 HOH HOH . K 6 HOH B 39 539 539 HOH HOH . K 6 HOH B 40 540 540 HOH HOH . K 6 HOH B 41 541 541 HOH HOH . K 6 HOH B 42 542 542 HOH HOH . K 6 HOH B 43 543 543 HOH HOH . K 6 HOH B 44 544 544 HOH HOH . K 6 HOH B 45 545 545 HOH HOH . K 6 HOH B 46 546 546 HOH HOH . K 6 HOH B 47 547 547 HOH HOH . K 6 HOH B 48 548 548 HOH HOH . K 6 HOH B 49 549 549 HOH HOH . K 6 HOH B 50 550 550 HOH HOH . K 6 HOH B 51 551 551 HOH HOH . K 6 HOH B 52 552 552 HOH HOH . K 6 HOH B 53 553 553 HOH HOH . K 6 HOH B 54 554 554 HOH HOH . K 6 HOH B 55 555 555 HOH HOH . K 6 HOH B 56 556 556 HOH HOH . K 6 HOH B 57 557 557 HOH HOH . K 6 HOH B 58 558 558 HOH HOH . K 6 HOH B 59 559 559 HOH HOH . K 6 HOH B 60 560 560 HOH HOH . K 6 HOH B 61 561 561 HOH HOH . K 6 HOH B 62 562 562 HOH HOH . K 6 HOH B 63 563 563 HOH HOH . K 6 HOH B 64 564 564 HOH HOH . K 6 HOH B 65 565 565 HOH HOH . K 6 HOH B 66 566 566 HOH HOH . K 6 HOH B 67 567 567 HOH HOH . K 6 HOH B 68 568 568 HOH HOH . K 6 HOH B 69 569 569 HOH HOH . K 6 HOH B 70 570 570 HOH HOH . K 6 HOH B 71 571 571 HOH HOH . K 6 HOH B 72 572 572 HOH HOH . K 6 HOH B 73 573 573 HOH HOH . K 6 HOH B 74 574 574 HOH HOH . K 6 HOH B 75 575 575 HOH HOH . K 6 HOH B 76 576 576 HOH HOH . K 6 HOH B 77 577 577 HOH HOH . K 6 HOH B 78 578 578 HOH HOH . K 6 HOH B 79 579 579 HOH HOH . K 6 HOH B 80 580 580 HOH HOH . K 6 HOH B 81 581 581 HOH HOH . K 6 HOH B 82 582 582 HOH HOH . K 6 HOH B 83 583 583 HOH HOH . K 6 HOH B 84 584 584 HOH HOH . K 6 HOH B 85 585 585 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -12.6 -8.696 -11.947 1 35.47 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . F 4 -12.145 -7.486 -12.528 1 37.01 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . F 4 -13.692 -8.451 -10.901 1 37.07 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . F 4 -13.235 -7.648 -9.837 1 36.15 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . F 4 -14.061 -9.784 -10.276 1 33.7 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . F 4 -14.916 -9.465 -9.209 1 47.51 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 6 #