data_4XZI
#
_model_server_result.job_id            u4JDyExYV_7dlu7VwtWyxw 
_model_server_result.datetime_utc      '2024-11-18 05:48:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xzi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4XZI 
#
_exptl.entry_id    4XZI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XZI 
_cell.length_a            74.065 
_cell.length_b            84.78 
_cell.length_c            105.239 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XZI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 273 n n 
PA O2A NAP sing 274 n n 
PA O5B NAP sing 275 n n 
PA O3 NAP sing 276 n n 
O2A HOA2 NAP sing 277 n n 
O5B C5B NAP sing 278 n n 
C5B C4B NAP sing 279 n n 
C5B H51A NAP sing 280 n n 
C5B H52A NAP sing 281 n n 
C4B O4B NAP sing 282 n n 
C4B C3B NAP sing 283 n n 
C4B H4B NAP sing 284 n n 
O4B C1B NAP sing 285 n n 
C3B O3B NAP sing 286 n n 
C3B C2B NAP sing 287 n n 
C3B H3B NAP sing 288 n n 
O3B HO3A NAP sing 289 n n 
C2B O2B NAP sing 290 n n 
C2B C1B NAP sing 291 n n 
C2B H2B NAP sing 292 n n 
O2B P2B NAP sing 293 n n 
C1B N9A NAP sing 294 n n 
C1B H1B NAP sing 295 n n 
N9A C8A NAP sing 296 n y 
N9A C4A NAP sing 297 n y 
C8A N7A NAP doub 298 n y 
C8A H8A NAP sing 299 n n 
N7A C5A NAP sing 300 n y 
C5A C6A NAP sing 301 n y 
C5A C4A NAP doub 302 n y 
C6A N6A NAP sing 303 n n 
C6A N1A NAP doub 304 n y 
N6A H61A NAP sing 305 n n 
N6A H62A NAP sing 306 n n 
N1A C2A NAP sing 307 n y 
C2A N3A NAP doub 308 n y 
C2A H2A NAP sing 309 n n 
N3A C4A NAP sing 310 n y 
O3 PN NAP sing 311 n n 
PN O1N NAP doub 312 n n 
PN O2N NAP sing 313 n n 
PN O5D NAP sing 314 n n 
O5D C5D NAP sing 315 n n 
C5D C4D NAP sing 316 n n 
C5D H51N NAP sing 317 n n 
C5D H52N NAP sing 318 n n 
C4D O4D NAP sing 319 n n 
C4D C3D NAP sing 320 n n 
C4D H4D NAP sing 321 n n 
O4D C1D NAP sing 322 n n 
C3D O3D NAP sing 323 n n 
C3D C2D NAP sing 324 n n 
C3D H3D NAP sing 325 n n 
O3D HO3N NAP sing 326 n n 
C2D O2D NAP sing 327 n n 
C2D C1D NAP sing 328 n n 
C2D H2D NAP sing 329 n n 
O2D HO2N NAP sing 330 n n 
C1D N1N NAP sing 331 n n 
C1D H1D NAP sing 332 n n 
N1N C2N NAP sing 333 n y 
N1N C6N NAP doub 334 n y 
C2N C3N NAP doub 335 n y 
C2N H2N NAP sing 336 n n 
C3N C7N NAP sing 337 n n 
C3N C4N NAP sing 338 n y 
C7N O7N NAP doub 339 n n 
C7N N7N NAP sing 340 n n 
N7N H71N NAP sing 341 n n 
N7N H72N NAP sing 342 n n 
C4N C5N NAP doub 343 n y 
C4N H4N NAP sing 344 n n 
C5N C6N NAP sing 345 n y 
C5N H5N NAP sing 346 n n 
C6N H6N NAP sing 347 n n 
P2B O1X NAP doub 348 n n 
P2B O2X NAP sing 349 n n 
P2B O3X NAP sing 350 n n 
O2X HOP2 NAP sing 351 n n 
O3X HOP3 NAP sing 352 n n 
#
_atom_sites.entry_id                     4XZI 
_atom_sites.fract_transf_matrix[1][1]    0.013502 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011795 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 401 316 NAP NAP . 
C 3 F49 A 1 402 900 F49 F49 . 
D 4 HOH A 1 501 38 HOH HOH . 
D 4 HOH A 2 502 18 HOH HOH . 
D 4 HOH A 3 503 8 HOH HOH . 
D 4 HOH A 4 504 43 HOH HOH . 
D 4 HOH A 5 505 7 HOH HOH . 
D 4 HOH A 6 506 19 HOH HOH . 
D 4 HOH A 7 507 30 HOH HOH . 
D 4 HOH A 8 508 22 HOH HOH . 
D 4 HOH A 9 509 36 HOH HOH . 
D 4 HOH A 10 510 17 HOH HOH . 
D 4 HOH A 11 511 40 HOH HOH . 
D 4 HOH A 12 512 33 HOH HOH . 
D 4 HOH A 13 513 2 HOH HOH . 
D 4 HOH A 14 514 3 HOH HOH . 
D 4 HOH A 15 515 4 HOH HOH . 
D 4 HOH A 16 516 5 HOH HOH . 
D 4 HOH A 17 517 9 HOH HOH . 
D 4 HOH A 18 518 10 HOH HOH . 
D 4 HOH A 19 519 11 HOH HOH . 
D 4 HOH A 20 520 12 HOH HOH . 
D 4 HOH A 21 521 13 HOH HOH . 
D 4 HOH A 22 522 14 HOH HOH . 
D 4 HOH A 23 523 15 HOH HOH . 
D 4 HOH A 24 524 16 HOH HOH . 
D 4 HOH A 25 525 20 HOH HOH . 
D 4 HOH A 26 526 23 HOH HOH . 
D 4 HOH A 27 527 24 HOH HOH . 
D 4 HOH A 28 528 25 HOH HOH . 
D 4 HOH A 29 529 26 HOH HOH . 
D 4 HOH A 30 530 27 HOH HOH . 
D 4 HOH A 31 531 28 HOH HOH . 
D 4 HOH A 32 532 29 HOH HOH . 
D 4 HOH A 33 533 31 HOH HOH . 
D 4 HOH A 34 534 32 HOH HOH . 
D 4 HOH A 35 535 35 HOH HOH . 
D 4 HOH A 36 536 37 HOH HOH . 
D 4 HOH A 37 537 39 HOH HOH . 
D 4 HOH A 38 538 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 16.652 3.773 28.233 1 12.14 ? PA NAP 401 A 1 
HETATM 2 O O1A NAP . . . B 2 15.988 4.178 26.953 1 16.94 ? O1A NAP 401 A 1 
HETATM 3 O O2A NAP . . . B 2 17.838 4.483 28.812 1 8.3 ? O2A NAP 401 A 1 
HETATM 4 O O5B NAP . . . B 2 17.003 2.21 28.054 1 14.67 ? O5B NAP 401 A 1 
HETATM 5 C C5B NAP . . . B 2 17.452 1.408 29.144 1 8.56 ? C5B NAP 401 A 1 
HETATM 6 C C4B NAP . . . B 2 17.357 -0.061 28.747 1 15 ? C4B NAP 401 A 1 
HETATM 7 O O4B NAP . . . B 2 18.219 -0.314 27.631 1 22.47 ? O4B NAP 401 A 1 
HETATM 8 C C3B NAP . . . B 2 17.806 -1.001 29.857 1 15.17 ? C3B NAP 401 A 1 
HETATM 9 O O3B NAP . . . B 2 17.082 -2.236 29.751 1 17.1 ? O3B NAP 401 A 1 
HETATM 10 C C2B NAP . . . B 2 19.245 -1.31 29.54 1 19.56 ? C2B NAP 401 A 1 
HETATM 11 O O2B NAP . . . B 2 19.543 -2.637 29.966 1 26.15 ? O2B NAP 401 A 1 
HETATM 12 C C1B NAP . . . B 2 19.296 -1.173 28.022 1 20.08 ? C1B NAP 401 A 1 
HETATM 13 N N9A NAP . . . B 2 20.619 -0.647 27.593 1 17.27 ? N9A NAP 401 A 1 
HETATM 14 C C8A NAP . . . B 2 21.328 0.295 28.232 1 19.19 ? C8A NAP 401 A 1 
HETATM 15 N N7A NAP . . . B 2 22.486 0.503 27.57 1 23.99 ? N7A NAP 401 A 1 
HETATM 16 C C5A NAP . . . B 2 22.49 -0.319 26.495 1 22.09 ? C5A NAP 401 A 1 
HETATM 17 C C6A NAP . . . B 2 23.404 -0.537 25.476 1 17.14 ? C6A NAP 401 A 1 
HETATM 18 N N6A NAP . . . B 2 24.561 0.171 25.443 1 17.84 ? N6A NAP 401 A 1 
HETATM 19 N N1A NAP . . . B 2 23.118 -1.449 24.523 1 17.34 ? N1A NAP 401 A 1 
HETATM 20 C C2A NAP . . . B 2 21.969 -2.144 24.554 1 17.38 ? C2A NAP 401 A 1 
HETATM 21 N N3A NAP . . . B 2 21.069 -1.954 25.529 1 19.72 ? N3A NAP 401 A 1 
HETATM 22 C C4A NAP . . . B 2 21.311 -1.044 26.512 1 19.54 ? C4A NAP 401 A 1 
HETATM 23 O O3 NAP . . . B 2 15.459 3.636 29.315 1 25.33 ? O3 NAP 401 A 1 
HETATM 24 P PN NAP . . . B 2 14.965 4.581 30.523 1 9.79 ? PN NAP 401 A 1 
HETATM 25 O O1N NAP . . . B 2 15.471 3.965 31.817 1 11.43 ? O1N NAP 401 A 1 
HETATM 26 O O2N NAP . . . B 2 13.477 4.757 30.29 1 6.91 ? O2N NAP 401 A 1 
HETATM 27 O O5D NAP . . . B 2 15.6 6.067 30.393 1 13.85 ? O5D NAP 401 A 1 
HETATM 28 C C5D NAP . . . B 2 16.866 6.433 30.916 1 7.31 ? C5D NAP 401 A 1 
HETATM 29 C C4D NAP . . . B 2 16.68 7.272 32.155 1 9.54 ? C4D NAP 401 A 1 
HETATM 30 O O4D NAP . . . B 2 15.862 8.421 31.894 1 23.48 ? O4D NAP 401 A 1 
HETATM 31 C C3D NAP . . . B 2 15.886 6.524 33.194 1 12.08 ? C3D NAP 401 A 1 
HETATM 32 O O3D NAP . . . B 2 16.593 5.454 33.836 1 11.15 ? O3D NAP 401 A 1 
HETATM 33 C C2D NAP . . . B 2 15.455 7.667 34.077 1 12.42 ? C2D NAP 401 A 1 
HETATM 34 O O2D NAP . . . B 2 16.524 8.038 34.946 1 14.71 ? O2D NAP 401 A 1 
HETATM 35 C C1D NAP . . . B 2 15.162 8.785 33.084 1 7.32 ? C1D NAP 401 A 1 
HETATM 36 N N1N NAP . . . B 2 13.698 8.819 32.916 1 5.22 ? N1N NAP 401 A 1 
HETATM 37 C C2N NAP . . . B 2 13.005 9.843 33.429 1 4.93 ? C2N NAP 401 A 1 
HETATM 38 C C3N NAP . . . B 2 11.627 9.932 33.311 1 4.89 ? C3N NAP 401 A 1 
HETATM 39 C C7N NAP . . . B 2 10.845 11.098 33.874 1 10.03 ? C7N NAP 401 A 1 
HETATM 40 O O7N NAP . . . B 2 9.627 11.031 33.902 1 12.09 ? O7N NAP 401 A 1 
HETATM 41 N N7N NAP . . . B 2 11.479 12.185 34.304 1 9.85 ? N7N NAP 401 A 1 
HETATM 42 C C4N NAP . . . B 2 10.955 8.912 32.687 1 4.42 ? C4N NAP 401 A 1 
HETATM 43 C C5N NAP . . . B 2 11.685 7.851 32.16 1 9.77 ? C5N NAP 401 A 1 
HETATM 44 C C6N NAP . . . B 2 13.061 7.826 32.287 1 9 ? C6N NAP 401 A 1 
HETATM 45 P P2B NAP . . . B 2 20.446 -2.999 31.254 1 15.32 ? P2B NAP 401 A 1 
HETATM 46 O O1X NAP . . . B 2 21.85 -3.083 30.711 1 26.58 ? O1X NAP 401 A 1 
HETATM 47 O O2X NAP . . . B 2 20.235 -1.862 32.236 1 19.77 ? O2X NAP 401 A 1 
HETATM 48 O O3X NAP . . . B 2 19.862 -4.33 31.637 1 10.02 ? O3X NAP 401 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#