data_4XZI # _model_server_result.job_id VGEhIqkbp_lxpvecEbKziQ _model_server_result.datetime_utc '2025-07-16 15:16:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4XZI # _exptl.entry_id 4XZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 605.856 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2,4-dioxo-3-(2,3,4,5-tetrabromo-6-methoxybenzyl)-3,4-dihydropyrimidin-1(2H)-yl]acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XZI _cell.length_a 74.065 _cell.length_b 84.78 _cell.length_c 105.239 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H10 Br4 N2 O5' _chem_comp.formula_weight 605.856 _chem_comp.id F49 _chem_comp.mon_nstd_flag . _chem_comp.name '[2,4-dioxo-3-(2,3,4,5-tetrabromo-6-methoxybenzyl)-3,4-dihydropyrimidin-1(2H)-yl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C13 F49 doub 83 n n C11 C9 F49 sing 84 n n C13 N12 F49 sing 85 n n O18 C9 F49 doub 86 n n C9 N8 F49 sing 87 n n N12 C19 F49 sing 88 n n N12 C10 F49 sing 89 n n C19 C20 F49 sing 90 n n O21 C20 F49 doub 91 n n C20 O22 F49 sing 92 n n N8 C10 F49 sing 93 n n N8 C7 F49 sing 94 n n C10 O23 F49 doub 95 n n C25 O24 F49 sing 96 n n BR4 C2 F49 sing 97 n n BR5 C4 F49 sing 98 n n C2 C4 F49 doub 99 n y C2 C1 F49 sing 100 n y C7 C1 F49 sing 101 n n C4 C6 F49 sing 102 n y C1 C3 F49 doub 103 n y C6 C5 F49 doub 104 n y C6 BR6 F49 sing 105 n n C3 C5 F49 sing 106 n y C3 O24 F49 sing 107 n n C5 BR7 F49 sing 108 n n C19 H1 F49 sing 109 n n C19 H2 F49 sing 110 n n O22 H3 F49 sing 111 n n C13 H4 F49 sing 112 n n C11 H5 F49 sing 113 n n C7 H6 F49 sing 114 n n C7 H7 F49 sing 115 n n C25 H8 F49 sing 116 n n C25 H9 F49 sing 117 n n C25 H10 F49 sing 118 n n # _atom_sites.entry_id 4XZI _atom_sites.fract_transf_matrix[1][1] 0.013502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 316 NAP NAP . C 3 F49 A 1 402 900 F49 F49 . D 4 HOH A 1 501 38 HOH HOH . D 4 HOH A 2 502 18 HOH HOH . D 4 HOH A 3 503 8 HOH HOH . D 4 HOH A 4 504 43 HOH HOH . D 4 HOH A 5 505 7 HOH HOH . D 4 HOH A 6 506 19 HOH HOH . D 4 HOH A 7 507 30 HOH HOH . D 4 HOH A 8 508 22 HOH HOH . D 4 HOH A 9 509 36 HOH HOH . D 4 HOH A 10 510 17 HOH HOH . D 4 HOH A 11 511 40 HOH HOH . D 4 HOH A 12 512 33 HOH HOH . D 4 HOH A 13 513 2 HOH HOH . D 4 HOH A 14 514 3 HOH HOH . D 4 HOH A 15 515 4 HOH HOH . D 4 HOH A 16 516 5 HOH HOH . D 4 HOH A 17 517 9 HOH HOH . D 4 HOH A 18 518 10 HOH HOH . D 4 HOH A 19 519 11 HOH HOH . D 4 HOH A 20 520 12 HOH HOH . D 4 HOH A 21 521 13 HOH HOH . D 4 HOH A 22 522 14 HOH HOH . D 4 HOH A 23 523 15 HOH HOH . D 4 HOH A 24 524 16 HOH HOH . D 4 HOH A 25 525 20 HOH HOH . D 4 HOH A 26 526 23 HOH HOH . D 4 HOH A 27 527 24 HOH HOH . D 4 HOH A 28 528 25 HOH HOH . D 4 HOH A 29 529 26 HOH HOH . D 4 HOH A 30 530 27 HOH HOH . D 4 HOH A 31 531 28 HOH HOH . D 4 HOH A 32 532 29 HOH HOH . D 4 HOH A 33 533 31 HOH HOH . D 4 HOH A 34 534 32 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 37 HOH HOH . D 4 HOH A 37 537 39 HOH HOH . D 4 HOH A 38 538 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 F49 . A . C 3 7.392 6.156 37.568 0.6 21.83 ? O23 F49 402 A 1 HETATM 2 O O23 F49 . B . C 3 8.512 6.019 37.633 0.4 21.45 ? O23 F49 402 A 1 HETATM 3 C C10 F49 . A . C 3 6.929 6.118 36.408 0.6 19.45 ? C10 F49 402 A 1 HETATM 4 C C10 F49 . B . C 3 7.74 6.021 36.647 0.4 19.78 ? C10 F49 402 A 1 HETATM 5 N N12 F49 . A . C 3 7.769 6.231 35.359 0.6 19.6 ? N12 F49 402 A 1 HETATM 6 N N12 F49 . B . C 3 8.209 6.385 35.443 0.4 18.44 ? N12 F49 402 A 1 HETATM 7 C C19 F49 . A . C 3 9.204 6.426 35.595 0.6 14.65 ? C19 F49 402 A 1 HETATM 8 C C19 F49 . B . C 3 9.601 6.811 35.328 0.4 12.9 ? C19 F49 402 A 1 HETATM 9 C C20 F49 . A . C 3 9.399 7.916 35.782 0.6 9.4 ? C20 F49 402 A 1 HETATM 10 C C20 F49 . B . C 3 9.579 8.262 35.765 0.4 10.06 ? C20 F49 402 A 1 HETATM 11 O O22 F49 . A . C 3 8.401 8.624 36.014 0.6 8.31 ? O22 F49 402 A 1 HETATM 12 O O22 F49 . B . C 3 10.644 8.912 35.874 0.4 11.19 ? O22 F49 402 A 1 HETATM 13 O O21 F49 . A . C 3 10.543 8.411 35.69 0.6 12.54 ? O21 F49 402 A 1 HETATM 14 O O21 F49 . B . C 3 8.47 8.783 36.002 0.4 8.65 ? O21 F49 402 A 1 HETATM 15 C C13 F49 . A . C 3 7.296 6.2 34.105 0.6 16.27 ? C13 F49 402 A 1 HETATM 16 C C13 F49 . B . C 3 7.415 6.406 34.362 0.4 16.77 ? C13 F49 402 A 1 HETATM 17 C C11 F49 . A . C 3 5.928 6.037 33.905 0.6 19.2 ? C11 F49 402 A 1 HETATM 18 C C11 F49 . B . C 3 6.087 6.025 34.498 0.4 20.3 ? C11 F49 402 A 1 HETATM 19 C C9 F49 . A . C 3 5.077 5.918 35.008 0.6 22.68 ? C9 F49 402 A 1 HETATM 20 C C9 F49 . B . C 3 5.623 5.648 35.756 0.4 22.6 ? C9 F49 402 A 1 HETATM 21 O O18 F49 . A . C 3 3.843 5.778 34.823 0.6 20.12 ? O18 F49 402 A 1 HETATM 22 O O18 F49 . B . C 3 4.432 5.295 35.902 0.4 23.36 ? O18 F49 402 A 1 HETATM 23 N N8 F49 . A . C 3 5.602 5.96 36.251 0.6 22.19 ? N8 F49 402 A 1 HETATM 24 N N8 F49 . B . C 3 6.462 5.649 36.805 0.4 20.17 ? N8 F49 402 A 1 HETATM 25 C C7 F49 . A . C 3 4.777 5.855 37.468 0.6 20.92 ? C7 F49 402 A 1 HETATM 26 C C7 F49 . B . C 3 5.976 5.24 38.131 0.4 23.02 ? C7 F49 402 A 1 HETATM 27 C C1 F49 . A . C 3 3.892 4.632 37.537 0.6 30.08 ? C1 F49 402 A 1 HETATM 28 C C1 F49 . B . C 3 6.468 3.896 38.659 0.4 30.16 ? C1 F49 402 A 1 HETATM 29 C C3 F49 . A . C 3 2.525 4.804 37.687 0.6 29.67 ? C3 F49 402 A 1 HETATM 30 C C3 F49 . B . C 3 7.24 2.984 37.943 0.4 32.93 ? C3 F49 402 A 1 HETATM 31 O O24 F49 . A . C 3 1.942 6.058 37.783 0.6 12.07 ? O24 F49 402 A 1 HETATM 32 O O24 F49 . B . C 3 7.625 3.19 36.652 0.4 29.59 ? O24 F49 402 A 1 HETATM 33 C C25 F49 . A . C 3 1.317 6.654 36.655 0.6 16.82 ? C25 F49 402 A 1 HETATM 34 C C25 F49 . B . C 3 6.767 2.601 35.685 0.4 23.79 ? C25 F49 402 A 1 HETATM 35 C C5 F49 . A . C 3 1.742 3.671 37.739 0.6 20.17 ? C5 F49 402 A 1 HETATM 36 C C5 F49 . B . C 3 7.616 1.789 38.519 0.4 29.29 ? C5 F49 402 A 1 HETATM 37 BR BR7 F49 . A . C 3 -0.094 3.862 37.929 0.6 74.45 ? BR7 F49 402 A 1 HETATM 38 BR BR7 F49 . B . C 3 8.672 0.605 37.487 0.4 31.83 ? BR7 F49 402 A 1 HETATM 39 C C6 F49 . A . C 3 2.243 2.401 37.667 0.6 27.52 ? C6 F49 402 A 1 HETATM 40 C C6 F49 . B . C 3 7.233 1.507 39.816 0.4 20.87 ? C6 F49 402 A 1 HETATM 41 BR BR6 F49 . A . C 3 1.113 0.898 37.767 0.6 71.12 ? BR6 F49 402 A 1 HETATM 42 BR BR6 F49 . B . C 3 7.69 -0.08 40.686 0.4 19.26 ? BR6 F49 402 A 1 HETATM 43 C C4 F49 . A . C 3 3.586 2.242 37.531 0.6 33.77 ? C4 F49 402 A 1 HETATM 44 C C4 F49 . B . C 3 6.484 2.396 40.533 0.4 26.85 ? C4 F49 402 A 1 HETATM 45 BR BR5 F49 . A . C 3 4.385 0.547 37.434 0.6 32.12 ? BR5 F49 402 A 1 HETATM 46 BR BR5 F49 . B . C 3 6 1.968 42.304 0.4 44.88 ? BR5 F49 402 A 1 HETATM 47 C C2 F49 . A . C 3 4.406 3.338 37.46 0.6 37.55 ? C2 F49 402 A 1 HETATM 48 C C2 F49 . B . C 3 6.107 3.576 39.95 0.4 22.9 ? C2 F49 402 A 1 HETATM 49 BR BR4 F49 . A . C 3 6.236 2.915 37.254 0.6 69.81 ? BR4 F49 402 A 1 HETATM 50 BR BR4 F49 . B . C 3 5.09 4.809 40.911 0.4 28.43 ? BR4 F49 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #