data_4XZJ # _model_server_result.job_id biK65JFMTKcTMTJEb-BkDg _model_server_result.datetime_utc '2024-11-24 15:01:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 4XZJ # _exptl.entry_id 4XZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XZJ _cell.length_a 49.7 _cell.length_b 52 _cell.length_c 100.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 224 n n PA O2A NAD sing 225 n n PA O5B NAD sing 226 n n PA O3 NAD sing 227 n n O2A HOA2 NAD sing 228 n n O5B C5B NAD sing 229 n n C5B C4B NAD sing 230 n n C5B H51A NAD sing 231 n n C5B H52A NAD sing 232 n n C4B O4B NAD sing 233 n n C4B C3B NAD sing 234 n n C4B H4B NAD sing 235 n n O4B C1B NAD sing 236 n n C3B O3B NAD sing 237 n n C3B C2B NAD sing 238 n n C3B H3B NAD sing 239 n n O3B HO3A NAD sing 240 n n C2B O2B NAD sing 241 n n C2B C1B NAD sing 242 n n C2B H2B NAD sing 243 n n O2B HO2A NAD sing 244 n n C1B N9A NAD sing 245 n n C1B H1B NAD sing 246 n n N9A C8A NAD sing 247 n y N9A C4A NAD sing 248 n y C8A N7A NAD doub 249 n y C8A H8A NAD sing 250 n n N7A C5A NAD sing 251 n y C5A C6A NAD sing 252 n y C5A C4A NAD doub 253 n y C6A N6A NAD sing 254 n n C6A N1A NAD doub 255 n y N6A H61A NAD sing 256 n n N6A H62A NAD sing 257 n n N1A C2A NAD sing 258 n y C2A N3A NAD doub 259 n y C2A H2A NAD sing 260 n n N3A C4A NAD sing 261 n y O3 PN NAD sing 262 n n PN O1N NAD doub 263 n n PN O2N NAD sing 264 n n PN O5D NAD sing 265 n n O5D C5D NAD sing 266 n n C5D C4D NAD sing 267 n n C5D H51N NAD sing 268 n n C5D H52N NAD sing 269 n n C4D O4D NAD sing 270 n n C4D C3D NAD sing 271 n n C4D H4D NAD sing 272 n n O4D C1D NAD sing 273 n n C3D O3D NAD sing 274 n n C3D C2D NAD sing 275 n n C3D H3D NAD sing 276 n n O3D HO3N NAD sing 277 n n C2D O2D NAD sing 278 n n C2D C1D NAD sing 279 n n C2D H2D NAD sing 280 n n O2D HO2N NAD sing 281 n n C1D N1N NAD sing 282 n n C1D H1D NAD sing 283 n n N1N C2N NAD sing 284 n y N1N C6N NAD doub 285 n y C2N C3N NAD doub 286 n y C2N H2N NAD sing 287 n n C3N C7N NAD sing 288 n n C3N C4N NAD sing 289 n y C7N O7N NAD doub 290 n n C7N N7N NAD sing 291 n n N7N H71N NAD sing 292 n n N7N H72N NAD sing 293 n n C4N C5N NAD doub 294 n y C4N H4N NAD sing 295 n n C5N C6N NAD sing 296 n y C5N H5N NAD sing 297 n n C6N H6N NAD sing 298 n n # _atom_sites.entry_id 4XZJ _atom_sites.fract_transf_matrix[1][1] 0.020121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 700 700 NAD NAD . C 3 HOH A 1 801 1153 HOH HOH . C 3 HOH A 2 802 1121 HOH HOH . C 3 HOH A 3 803 1003 HOH HOH . C 3 HOH A 4 804 1062 HOH HOH . C 3 HOH A 5 805 1158 HOH HOH . C 3 HOH A 6 806 1054 HOH HOH . C 3 HOH A 7 807 1133 HOH HOH . C 3 HOH A 8 808 1038 HOH HOH . C 3 HOH A 9 809 1066 HOH HOH . C 3 HOH A 10 810 1020 HOH HOH . C 3 HOH A 11 811 1065 HOH HOH . C 3 HOH A 12 812 1068 HOH HOH . C 3 HOH A 13 813 1139 HOH HOH . C 3 HOH A 14 814 1145 HOH HOH . C 3 HOH A 15 815 1058 HOH HOH . C 3 HOH A 16 816 1024 HOH HOH . C 3 HOH A 17 817 1042 HOH HOH . C 3 HOH A 18 818 1085 HOH HOH . C 3 HOH A 19 819 1060 HOH HOH . C 3 HOH A 20 820 1064 HOH HOH . C 3 HOH A 21 821 1084 HOH HOH . C 3 HOH A 22 822 1130 HOH HOH . C 3 HOH A 23 823 1159 HOH HOH . C 3 HOH A 24 824 1079 HOH HOH . C 3 HOH A 25 825 1148 HOH HOH . C 3 HOH A 26 826 1004 HOH HOH . C 3 HOH A 27 827 1037 HOH HOH . C 3 HOH A 28 828 1039 HOH HOH . C 3 HOH A 29 829 1091 HOH HOH . C 3 HOH A 30 830 1071 HOH HOH . C 3 HOH A 31 831 1045 HOH HOH . C 3 HOH A 32 832 1096 HOH HOH . C 3 HOH A 33 833 1057 HOH HOH . C 3 HOH A 34 834 1162 HOH HOH . C 3 HOH A 35 835 1014 HOH HOH . C 3 HOH A 36 836 1023 HOH HOH . C 3 HOH A 37 837 1078 HOH HOH . C 3 HOH A 38 838 1129 HOH HOH . C 3 HOH A 39 839 1123 HOH HOH . C 3 HOH A 40 840 1160 HOH HOH . C 3 HOH A 41 841 1022 HOH HOH . C 3 HOH A 42 842 1150 HOH HOH . C 3 HOH A 43 843 1041 HOH HOH . C 3 HOH A 44 844 1070 HOH HOH . C 3 HOH A 45 845 1073 HOH HOH . C 3 HOH A 46 846 1082 HOH HOH . C 3 HOH A 47 847 1016 HOH HOH . C 3 HOH A 48 848 1069 HOH HOH . C 3 HOH A 49 849 1100 HOH HOH . C 3 HOH A 50 850 1089 HOH HOH . C 3 HOH A 51 851 1144 HOH HOH . C 3 HOH A 52 852 1075 HOH HOH . C 3 HOH A 53 853 1155 HOH HOH . C 3 HOH A 54 854 1046 HOH HOH . C 3 HOH A 55 855 1067 HOH HOH . C 3 HOH A 56 856 1040 HOH HOH . C 3 HOH A 57 857 1028 HOH HOH . C 3 HOH A 58 858 1002 HOH HOH . C 3 HOH A 59 859 1149 HOH HOH . C 3 HOH A 60 860 1143 HOH HOH . C 3 HOH A 61 861 1086 HOH HOH . C 3 HOH A 62 862 1131 HOH HOH . C 3 HOH A 63 863 1036 HOH HOH . C 3 HOH A 64 864 1074 HOH HOH . C 3 HOH A 65 865 1101 HOH HOH . C 3 HOH A 66 866 1090 HOH HOH . C 3 HOH A 67 867 1152 HOH HOH . C 3 HOH A 68 868 1097 HOH HOH . C 3 HOH A 69 869 1001 HOH HOH . C 3 HOH A 70 870 1005 HOH HOH . C 3 HOH A 71 871 1006 HOH HOH . C 3 HOH A 72 872 1007 HOH HOH . C 3 HOH A 73 873 1008 HOH HOH . C 3 HOH A 74 874 1009 HOH HOH . C 3 HOH A 75 875 1010 HOH HOH . C 3 HOH A 76 876 1011 HOH HOH . C 3 HOH A 77 877 1012 HOH HOH . C 3 HOH A 78 878 1013 HOH HOH . C 3 HOH A 79 879 1015 HOH HOH . C 3 HOH A 80 880 1017 HOH HOH . C 3 HOH A 81 881 1018 HOH HOH . C 3 HOH A 82 882 1019 HOH HOH . C 3 HOH A 83 883 1021 HOH HOH . C 3 HOH A 84 884 1025 HOH HOH . C 3 HOH A 85 885 1026 HOH HOH . C 3 HOH A 86 886 1027 HOH HOH . C 3 HOH A 87 887 1029 HOH HOH . C 3 HOH A 88 888 1030 HOH HOH . C 3 HOH A 89 889 1031 HOH HOH . C 3 HOH A 90 890 1032 HOH HOH . C 3 HOH A 91 891 1035 HOH HOH . C 3 HOH A 92 892 1043 HOH HOH . C 3 HOH A 93 893 1044 HOH HOH . C 3 HOH A 94 894 1047 HOH HOH . C 3 HOH A 95 895 1048 HOH HOH . C 3 HOH A 96 896 1049 HOH HOH . C 3 HOH A 97 897 1050 HOH HOH . C 3 HOH A 98 898 1051 HOH HOH . C 3 HOH A 99 899 1052 HOH HOH . C 3 HOH A 100 900 1053 HOH HOH . C 3 HOH A 101 901 1055 HOH HOH . C 3 HOH A 102 902 1056 HOH HOH . C 3 HOH A 103 903 1059 HOH HOH . C 3 HOH A 104 904 1061 HOH HOH . C 3 HOH A 105 905 1063 HOH HOH . C 3 HOH A 106 906 1072 HOH HOH . C 3 HOH A 107 907 1076 HOH HOH . C 3 HOH A 108 908 1077 HOH HOH . C 3 HOH A 109 909 1080 HOH HOH . C 3 HOH A 110 910 1081 HOH HOH . C 3 HOH A 111 911 1083 HOH HOH . C 3 HOH A 112 912 1087 HOH HOH . C 3 HOH A 113 913 1088 HOH HOH . C 3 HOH A 114 914 1092 HOH HOH . C 3 HOH A 115 915 1093 HOH HOH . C 3 HOH A 116 916 1094 HOH HOH . C 3 HOH A 117 917 1095 HOH HOH . C 3 HOH A 118 918 1098 HOH HOH . C 3 HOH A 119 919 1099 HOH HOH . C 3 HOH A 120 920 1119 HOH HOH . C 3 HOH A 121 921 1120 HOH HOH . C 3 HOH A 122 922 1122 HOH HOH . C 3 HOH A 123 923 1124 HOH HOH . C 3 HOH A 124 924 1125 HOH HOH . C 3 HOH A 125 925 1126 HOH HOH . C 3 HOH A 126 926 1127 HOH HOH . C 3 HOH A 127 927 1128 HOH HOH . C 3 HOH A 128 928 1132 HOH HOH . C 3 HOH A 129 929 1134 HOH HOH . C 3 HOH A 130 930 1135 HOH HOH . C 3 HOH A 131 931 1136 HOH HOH . C 3 HOH A 132 932 1137 HOH HOH . C 3 HOH A 133 933 1138 HOH HOH . C 3 HOH A 134 934 1140 HOH HOH . C 3 HOH A 135 935 1141 HOH HOH . C 3 HOH A 136 936 1142 HOH HOH . C 3 HOH A 137 937 1146 HOH HOH . C 3 HOH A 138 938 1147 HOH HOH . C 3 HOH A 139 939 1151 HOH HOH . C 3 HOH A 140 940 1154 HOH HOH . C 3 HOH A 141 941 1156 HOH HOH . C 3 HOH A 142 942 1157 HOH HOH . C 3 HOH A 143 943 1161 HOH HOH . C 3 HOH A 144 944 1163 HOH HOH . C 3 HOH A 145 945 1165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 7.24 36.994 5.7 1 16.62 ? PA NAD 700 A 1 HETATM 2 O O1A NAD . . . B 2 6.556 36.857 7.047 1 16.94 ? O1A NAD 700 A 1 HETATM 3 O O2A NAD . . . B 2 8.754 37.094 5.646 1 16.34 ? O2A NAD 700 A 1 HETATM 4 O O5B NAD . . . B 2 6.751 35.712 4.852 1 16.94 ? O5B NAD 700 A 1 HETATM 5 C C5B NAD . . . B 2 7.396 35.461 3.595 1 19.01 ? C5B NAD 700 A 1 HETATM 6 C C4B NAD . . . B 2 6.593 34.312 2.923 1 19.62 ? C4B NAD 700 A 1 HETATM 7 O O4B NAD . . . B 2 6.571 33.153 3.774 1 19.92 ? O4B NAD 700 A 1 HETATM 8 C C3B NAD . . . B 2 5.116 34.697 2.683 1 21.31 ? C3B NAD 700 A 1 HETATM 9 O O3B NAD . . . B 2 4.553 34.016 1.58 1 23.26 ? O3B NAD 700 A 1 HETATM 10 C C2B NAD . . . B 2 4.426 34.204 3.969 1 20.61 ? C2B NAD 700 A 1 HETATM 11 O O2B NAD . . . B 2 2.999 34.049 3.893 1 20.7 ? O2B NAD 700 A 1 HETATM 12 C C1B NAD . . . B 2 5.232 32.906 4.217 1 20.33 ? C1B NAD 700 A 1 HETATM 13 N N9A NAD . . . B 2 5.209 32.552 5.65 1 19.36 ? N9A NAD 700 A 1 HETATM 14 C C8A NAD . . . B 2 5.389 33.376 6.718 1 19.94 ? C8A NAD 700 A 1 HETATM 15 N N7A NAD . . . B 2 5.303 32.715 7.855 1 21.3 ? N7A NAD 700 A 1 HETATM 16 C C5A NAD . . . B 2 5.047 31.427 7.52 1 20.67 ? C5A NAD 700 A 1 HETATM 17 C C6A NAD . . . B 2 4.846 30.234 8.248 1 21.12 ? C6A NAD 700 A 1 HETATM 18 N N6A NAD . . . B 2 4.851 30.198 9.592 1 22.72 ? N6A NAD 700 A 1 HETATM 19 N N1A NAD . . . B 2 4.677 29.103 7.578 1 20.9 ? N1A NAD 700 A 1 HETATM 20 C C2A NAD . . . B 2 4.625 29.111 6.257 1 22.09 ? C2A NAD 700 A 1 HETATM 21 N N3A NAD . . . B 2 4.805 30.16 5.456 1 21.32 ? N3A NAD 700 A 1 HETATM 22 C C4A NAD . . . B 2 5.016 31.297 6.142 1 20.45 ? C4A NAD 700 A 1 HETATM 23 O O3 NAD . . . B 2 6.716 38.309 4.942 1 17.23 ? O3 NAD 700 A 1 HETATM 24 P PN NAD . . . B 2 5.206 38.775 4.708 1 16.9 ? PN NAD 700 A 1 HETATM 25 O O1N NAD . . . B 2 4.651 39.455 5.93 1 18.33 ? O1N NAD 700 A 1 HETATM 26 O O2N NAD . . . B 2 4.327 37.677 4.18 1 16.9 ? O2N NAD 700 A 1 HETATM 27 O O5D NAD . . . B 2 5.371 39.804 3.51 1 17.21 ? O5D NAD 700 A 1 HETATM 28 C C5D NAD . . . B 2 6.116 40.971 3.786 1 17.54 ? C5D NAD 700 A 1 HETATM 29 C C4D NAD . . . B 2 5.875 41.834 2.555 1 17.61 ? C4D NAD 700 A 1 HETATM 30 O O4D NAD . . . B 2 4.478 42.203 2.54 1 17.54 ? O4D NAD 700 A 1 HETATM 31 C C3D NAD . . . B 2 6.635 43.149 2.559 1 17.79 ? C3D NAD 700 A 1 HETATM 32 O O3D NAD . . . B 2 6.67 43.712 1.222 1 17.54 ? O3D NAD 700 A 1 HETATM 33 C C2D NAD . . . B 2 5.751 44.002 3.478 1 17.61 ? C2D NAD 700 A 1 HETATM 34 O O2D NAD . . . B 2 5.871 45.399 3.208 1 18.1 ? O2D NAD 700 A 1 HETATM 35 C C1D NAD . . . B 2 4.344 43.505 3.077 1 17.91 ? C1D NAD 700 A 1 HETATM 36 N N1N NAD . . . B 2 3.351 43.493 4.187 1 16.77 ? N1N NAD 700 A 1 HETATM 37 C C2N NAD . . . B 2 2.761 42.355 4.582 1 15.57 ? C2N NAD 700 A 1 HETATM 38 C C3N NAD . . . B 2 1.789 42.347 5.597 1 14.82 ? C3N NAD 700 A 1 HETATM 39 C C7N NAD . . . B 2 1.104 41.083 5.994 1 14.94 ? C7N NAD 700 A 1 HETATM 40 O O7N NAD . . . B 2 -0.088 41.15 6.316 1 15.31 ? O7N NAD 700 A 1 HETATM 41 N N7N NAD . . . B 2 1.774 39.918 5.924 1 14.41 ? N7N NAD 700 A 1 HETATM 42 C C4N NAD . . . B 2 1.418 43.574 6.163 1 15.1 ? C4N NAD 700 A 1 HETATM 43 C C5N NAD . . . B 2 2.046 44.748 5.712 1 15.54 ? C5N NAD 700 A 1 HETATM 44 C C6N NAD . . . B 2 2.999 44.67 4.713 1 16.48 ? C6N NAD 700 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #