data_4XZK
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_model_server_result.job_id            Gu-A8JgcfGs_jf3LBlTNug 
_model_server_result.datetime_utc      '2025-04-24 02:16:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xzk 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":700}' 
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_entry.id    4XZK 
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_exptl.entry_id    4XZK 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              130.191 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            AGMATINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XZK 
_cell.length_a            47.84 
_cell.length_b            52.09 
_cell.length_c            102.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XZK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H14 N4' 
_chem_comp.formula_weight    130.191 
_chem_comp.id                AG2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              AGMATINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (4-AMINOBUTYL)GUANIDINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA AG2 sing 1 n n 
N HN1 AG2 sing 2 n n 
N HN2 AG2 sing 3 n n 
CA CB AG2 sing 4 n n 
CA HA1 AG2 sing 5 n n 
CA HA2 AG2 sing 6 n n 
CB CG AG2 sing 7 n n 
CB HB1 AG2 sing 8 n n 
CB HB2 AG2 sing 9 n n 
CG CD AG2 sing 10 n n 
CG HG1 AG2 sing 11 n n 
CG HG2 AG2 sing 12 n n 
CD NE AG2 sing 13 n n 
CD HD1 AG2 sing 14 n n 
CD HD2 AG2 sing 15 n n 
NE CZ AG2 sing 16 n n 
NE HE1 AG2 sing 17 n n 
CZ NH1 AG2 doub 18 n n 
CZ NH2 AG2 sing 19 n n 
NH1 HH11 AG2 sing 20 n n 
NH2 HH21 AG2 sing 21 n n 
NH2 HH22 AG2 sing 22 n n 
#
_atom_sites.entry_id                     4XZK 
_atom_sites.fract_transf_matrix[1][1]    0.020903 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AG2 A 1 700 700 AG2 AG2 . 
C 3 HOH A 1 801 4142 HOH HOH . 
C 3 HOH A 2 802 3001 HOH HOH . 
C 3 HOH A 3 803 4121 HOH HOH . 
C 3 HOH A 4 804 4143 HOH HOH . 
C 3 HOH A 5 805 4166 HOH HOH . 
C 3 HOH A 6 806 4135 HOH HOH . 
C 3 HOH A 7 807 4171 HOH HOH . 
C 3 HOH A 8 808 1028 HOH HOH . 
C 3 HOH A 9 809 2049 HOH HOH . 
C 3 HOH A 10 810 1034 HOH HOH . 
C 3 HOH A 11 811 1033 HOH HOH . 
C 3 HOH A 12 812 1031 HOH HOH . 
C 3 HOH A 13 813 1001 HOH HOH . 
C 3 HOH A 14 814 4167 HOH HOH . 
C 3 HOH A 15 815 4165 HOH HOH . 
C 3 HOH A 16 816 2022 HOH HOH . 
C 3 HOH A 17 817 2047 HOH HOH . 
C 3 HOH A 18 818 2036 HOH HOH . 
C 3 HOH A 19 819 4132 HOH HOH . 
C 3 HOH A 20 820 1019 HOH HOH . 
C 3 HOH A 21 821 1006 HOH HOH . 
C 3 HOH A 22 822 2020 HOH HOH . 
C 3 HOH A 23 823 4163 HOH HOH . 
C 3 HOH A 24 824 4003 HOH HOH . 
C 3 HOH A 25 825 1025 HOH HOH . 
C 3 HOH A 26 826 1042 HOH HOH . 
C 3 HOH A 27 827 1038 HOH HOH . 
C 3 HOH A 28 828 4152 HOH HOH . 
C 3 HOH A 29 829 4141 HOH HOH . 
C 3 HOH A 30 830 4120 HOH HOH . 
C 3 HOH A 31 831 4151 HOH HOH . 
C 3 HOH A 32 832 1040 HOH HOH . 
C 3 HOH A 33 833 1002 HOH HOH . 
C 3 HOH A 34 834 2041 HOH HOH . 
C 3 HOH A 35 835 4153 HOH HOH . 
C 3 HOH A 36 836 4133 HOH HOH . 
C 3 HOH A 37 837 1023 HOH HOH . 
C 3 HOH A 38 838 1003 HOH HOH . 
C 3 HOH A 39 839 2025 HOH HOH . 
C 3 HOH A 40 840 1015 HOH HOH . 
C 3 HOH A 41 841 2011 HOH HOH . 
C 3 HOH A 42 842 1027 HOH HOH . 
C 3 HOH A 43 843 4001 HOH HOH . 
C 3 HOH A 44 844 1014 HOH HOH . 
C 3 HOH A 45 845 2015 HOH HOH . 
C 3 HOH A 46 846 2010 HOH HOH . 
C 3 HOH A 47 847 1009 HOH HOH . 
C 3 HOH A 48 848 4134 HOH HOH . 
C 3 HOH A 49 849 2019 HOH HOH . 
C 3 HOH A 50 850 1005 HOH HOH . 
C 3 HOH A 51 851 4164 HOH HOH . 
C 3 HOH A 52 852 4161 HOH HOH . 
C 3 HOH A 53 853 1004 HOH HOH . 
C 3 HOH A 54 854 2043 HOH HOH . 
C 3 HOH A 55 855 4002 HOH HOH . 
C 3 HOH A 56 856 4005 HOH HOH . 
C 3 HOH A 57 857 4004 HOH HOH . 
C 3 HOH A 58 858 2023 HOH HOH . 
C 3 HOH A 59 859 2024 HOH HOH . 
C 3 HOH A 60 860 4162 HOH HOH . 
C 3 HOH A 61 861 1037 HOH HOH . 
C 3 HOH A 62 862 1018 HOH HOH . 
C 3 HOH A 63 863 1026 HOH HOH . 
C 3 HOH A 64 864 4122 HOH HOH . 
C 3 HOH A 65 865 2050 HOH HOH . 
C 3 HOH A 66 866 1032 HOH HOH . 
C 3 HOH A 67 867 4172 HOH HOH . 
C 3 HOH A 68 868 2044 HOH HOH . 
C 3 HOH A 69 869 2007 HOH HOH . 
C 3 HOH A 70 870 4018 HOH HOH . 
C 3 HOH A 71 871 2054 HOH HOH . 
C 3 HOH A 72 872 1008 HOH HOH . 
C 3 HOH A 73 873 2045 HOH HOH . 
C 3 HOH A 74 874 1022 HOH HOH . 
C 3 HOH A 75 875 1011 HOH HOH . 
C 3 HOH A 76 876 2009 HOH HOH . 
C 3 HOH A 77 877 1017 HOH HOH . 
C 3 HOH A 78 878 2038 HOH HOH . 
C 3 HOH A 79 879 4131 HOH HOH . 
C 3 HOH A 80 880 1021 HOH HOH . 
C 3 HOH A 81 881 1016 HOH HOH . 
C 3 HOH A 82 882 2006 HOH HOH . 
C 3 HOH A 83 883 1020 HOH HOH . 
C 3 HOH A 84 884 1036 HOH HOH . 
C 3 HOH A 85 885 2008 HOH HOH . 
C 3 HOH A 86 886 3005 HOH HOH . 
C 3 HOH A 87 887 2021 HOH HOH . 
C 3 HOH A 88 888 2003 HOH HOH . 
C 3 HOH A 89 889 1012 HOH HOH . 
C 3 HOH A 90 890 4010 HOH HOH . 
C 3 HOH A 91 891 1013 HOH HOH . 
C 3 HOH A 92 892 2027 HOH HOH . 
C 3 HOH A 93 893 2042 HOH HOH . 
C 3 HOH A 94 894 4016 HOH HOH . 
C 3 HOH A 95 895 1035 HOH HOH . 
C 3 HOH A 96 896 2013 HOH HOH . 
C 3 HOH A 97 897 2051 HOH HOH . 
C 3 HOH A 98 898 2016 HOH HOH . 
C 3 HOH A 99 899 2028 HOH HOH . 
C 3 HOH A 100 900 3002 HOH HOH . 
C 3 HOH A 101 901 4123 HOH HOH . 
C 3 HOH A 102 902 2046 HOH HOH . 
C 3 HOH A 103 903 4017 HOH HOH . 
C 3 HOH A 104 904 2030 HOH HOH . 
C 3 HOH A 105 905 1007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N AG2 . . . B 2 5.993 44.821 3.691 1 27.46 ? N AG2 700 A 1 
HETATM 2 C CA AG2 . . . B 2 5.899 43.419 3.406 1 26.89 ? CA AG2 700 A 1 
HETATM 3 C CB AG2 . . . B 2 5.866 42.515 4.59 1 28.74 ? CB AG2 700 A 1 
HETATM 4 C CG AG2 . . . B 2 5.311 41.12 4.164 1 26.73 ? CG AG2 700 A 1 
HETATM 5 C CD AG2 . . . B 2 4.486 40.582 5.291 1 29.53 ? CD AG2 700 A 1 
HETATM 6 N NE AG2 . . . B 2 4.206 39.146 5.072 1 27.37 ? NE AG2 700 A 1 
HETATM 7 C CZ AG2 . . . B 2 3.094 38.595 5.444 1 26.17 ? CZ AG2 700 A 1 
HETATM 8 N NH1 AG2 . . . B 2 2.882 37.299 5.254 1 28.17 ? NH1 AG2 700 A 1 
HETATM 9 N NH2 AG2 . . . B 2 2.127 39.314 5.99 1 30.48 ? NH2 AG2 700 A 1 
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_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
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