data_4Y03 # _model_server_result.job_id RQbCnQKyknapZi2agNTBxA _model_server_result.datetime_utc '2024-11-26 20:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":802}' # _entry.id 4Y03 # _exptl.entry_id 4Y03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y03 _cell.length_a 41.68 _cell.length_b 58.48 _cell.length_c 139.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4Y03 _atom_sites.fract_transf_matrix[1][1] 0.023992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAL A 1 801 1 SAL DRG . D 2 SAL B 1 801 2 SAL DRG . E 3 CIT B 1 802 1 CIT CIT . F 4 HOH A 1 901 17 HOH HOH . F 4 HOH A 2 902 49 HOH HOH . F 4 HOH A 3 903 21 HOH HOH . F 4 HOH A 4 904 1 HOH HOH . F 4 HOH A 5 905 18 HOH HOH . F 4 HOH A 6 906 72 HOH HOH . F 4 HOH A 7 907 99 HOH HOH . F 4 HOH A 8 908 96 HOH HOH . F 4 HOH A 9 909 2 HOH HOH . F 4 HOH A 10 910 5 HOH HOH . F 4 HOH A 11 911 7 HOH HOH . F 4 HOH A 12 912 8 HOH HOH . F 4 HOH A 13 913 9 HOH HOH . F 4 HOH A 14 914 10 HOH HOH . F 4 HOH A 15 915 13 HOH HOH . F 4 HOH A 16 916 15 HOH HOH . F 4 HOH A 17 917 20 HOH HOH . F 4 HOH A 18 918 23 HOH HOH . F 4 HOH A 19 919 25 HOH HOH . F 4 HOH A 20 920 26 HOH HOH . F 4 HOH A 21 921 27 HOH HOH . F 4 HOH A 22 922 30 HOH HOH . F 4 HOH A 23 923 32 HOH HOH . F 4 HOH A 24 924 34 HOH HOH . F 4 HOH A 25 925 39 HOH HOH . F 4 HOH A 26 926 41 HOH HOH . F 4 HOH A 27 927 42 HOH HOH . F 4 HOH A 28 928 44 HOH HOH . F 4 HOH A 29 929 45 HOH HOH . F 4 HOH A 30 930 46 HOH HOH . F 4 HOH A 31 931 50 HOH HOH . F 4 HOH A 32 932 51 HOH HOH . F 4 HOH A 33 933 52 HOH HOH . F 4 HOH A 34 934 53 HOH HOH . F 4 HOH A 35 935 61 HOH HOH . F 4 HOH A 36 936 62 HOH HOH . F 4 HOH A 37 937 63 HOH HOH . F 4 HOH A 38 938 64 HOH HOH . F 4 HOH A 39 939 68 HOH HOH . F 4 HOH A 40 940 70 HOH HOH . F 4 HOH A 41 941 71 HOH HOH . F 4 HOH A 42 942 73 HOH HOH . F 4 HOH A 43 943 74 HOH HOH . F 4 HOH A 44 944 75 HOH HOH . F 4 HOH A 45 945 76 HOH HOH . F 4 HOH A 46 946 77 HOH HOH . F 4 HOH A 47 947 86 HOH HOH . F 4 HOH A 48 948 90 HOH HOH . F 4 HOH A 49 949 91 HOH HOH . F 4 HOH A 50 950 92 HOH HOH . F 4 HOH A 51 951 97 HOH HOH . F 4 HOH A 52 952 98 HOH HOH . F 4 HOH A 53 953 102 HOH HOH . G 4 HOH B 1 901 59 HOH HOH . G 4 HOH B 2 902 36 HOH HOH . G 4 HOH B 3 903 29 HOH HOH . G 4 HOH B 4 904 48 HOH HOH . G 4 HOH B 5 905 85 HOH HOH . G 4 HOH B 6 906 83 HOH HOH . G 4 HOH B 7 907 84 HOH HOH . G 4 HOH B 8 908 3 HOH HOH . G 4 HOH B 9 909 4 HOH HOH . G 4 HOH B 10 910 6 HOH HOH . G 4 HOH B 11 911 11 HOH HOH . G 4 HOH B 12 912 12 HOH HOH . G 4 HOH B 13 913 14 HOH HOH . G 4 HOH B 14 914 16 HOH HOH . G 4 HOH B 15 915 19 HOH HOH . G 4 HOH B 16 916 22 HOH HOH . G 4 HOH B 17 917 24 HOH HOH . G 4 HOH B 18 918 28 HOH HOH . G 4 HOH B 19 919 31 HOH HOH . G 4 HOH B 20 920 33 HOH HOH . G 4 HOH B 21 921 35 HOH HOH . G 4 HOH B 22 922 37 HOH HOH . G 4 HOH B 23 923 38 HOH HOH . G 4 HOH B 24 924 40 HOH HOH . G 4 HOH B 25 925 43 HOH HOH . G 4 HOH B 26 926 47 HOH HOH . G 4 HOH B 27 927 54 HOH HOH . G 4 HOH B 28 928 55 HOH HOH . G 4 HOH B 29 929 56 HOH HOH . G 4 HOH B 30 930 57 HOH HOH . G 4 HOH B 31 931 58 HOH HOH . G 4 HOH B 32 932 60 HOH HOH . G 4 HOH B 33 933 65 HOH HOH . G 4 HOH B 34 934 66 HOH HOH . G 4 HOH B 35 935 67 HOH HOH . G 4 HOH B 36 936 69 HOH HOH . G 4 HOH B 37 937 78 HOH HOH . G 4 HOH B 38 938 79 HOH HOH . G 4 HOH B 39 939 80 HOH HOH . G 4 HOH B 40 940 81 HOH HOH . G 4 HOH B 41 941 82 HOH HOH . G 4 HOH B 42 942 87 HOH HOH . G 4 HOH B 43 943 88 HOH HOH . G 4 HOH B 44 944 89 HOH HOH . G 4 HOH B 45 945 94 HOH HOH . G 4 HOH B 46 946 95 HOH HOH . G 4 HOH B 47 947 100 HOH HOH . G 4 HOH B 48 948 101 HOH HOH . G 4 HOH B 49 949 103 HOH HOH . G 4 HOH B 50 950 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 3 1.151 25.478 -29.295 1 64.1 ? C1 CIT 802 B 1 HETATM 2 O O1 CIT . . . E 3 1.53 24.461 -29.962 1 50 ? O1 CIT 802 B 1 HETATM 3 O O2 CIT . . . E 3 0.192 25.364 -28.478 1 39.12 ? O2 CIT 802 B 1 HETATM 4 C C2 CIT . . . E 3 1.794 26.849 -29.477 1 34.43 ? C2 CIT 802 B 1 HETATM 5 C C3 CIT . . . E 3 0.692 27.891 -29.828 1 57.67 ? C3 CIT 802 B 1 HETATM 6 O O7 CIT . . . E 3 -0.472 27.092 -30.182 1 57.02 ? O7 CIT 802 B 1 HETATM 7 C C4 CIT . . . E 3 0.35 28.8 -28.629 1 46.87 ? C4 CIT 802 B 1 HETATM 8 C C5 CIT . . . E 3 1.538 29.674 -28.227 1 70.91 ? C5 CIT 802 B 1 HETATM 9 O O3 CIT . . . E 3 2.667 29.562 -28.777 1 68.39 ? O3 CIT 802 B 1 HETATM 10 O O4 CIT . . . E 3 1.414 30.536 -27.322 1 47.11 ? O4 CIT 802 B 1 HETATM 11 C C6 CIT . . . E 3 0.966 28.81 -31.036 1 44.28 ? C6 CIT 802 B 1 HETATM 12 O O5 CIT . . . E 3 1.826 28.518 -31.884 1 41.16 ? O5 CIT 802 B 1 HETATM 13 O O6 CIT . . . E 3 0.328 29.88 -31.228 1 44.35 ? O6 CIT 802 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #