data_4Y0Q # _model_server_result.job_id kQGA_HKzpn4FOSLJr3pzBg _model_server_result.datetime_utc '2025-02-18 05:08:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4Y0Q # _exptl.entry_id 4Y0Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.401 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Pramocaine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y0Q _cell.length_a 53.525 _cell.length_b 53.525 _cell.length_c 110.959 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C17 H27 N O3' _chem_comp.formula_weight 293.401 _chem_comp.id PX9 _chem_comp.mon_nstd_flag . _chem_comp.name Pramocaine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PX9 sing 277 n n C2 C3 PX9 sing 278 n n C3 C4 PX9 sing 279 n n C4 O5 PX9 sing 280 n n C9 C10 PX9 doub 281 n y C9 C6 PX9 sing 282 n y O5 C6 PX9 sing 283 n n C10 C11 PX9 sing 284 n y C6 C7 PX9 doub 285 n y C17 C21 PX9 sing 286 n n C17 N16 PX9 sing 287 n n C21 O20 PX9 sing 288 n n C11 O12 PX9 sing 289 n n C11 C8 PX9 doub 290 n y C15 N16 PX9 sing 291 n n C15 C14 PX9 sing 292 n n C7 C8 PX9 sing 293 n y N16 C18 PX9 sing 294 n n O12 C13 PX9 sing 295 n n C13 C14 PX9 sing 296 n n O20 C19 PX9 sing 297 n n C18 C19 PX9 sing 298 n n C1 H1 PX9 sing 299 n n C1 H2 PX9 sing 300 n n C1 H3 PX9 sing 301 n n C2 H4 PX9 sing 302 n n C2 H5 PX9 sing 303 n n C3 H6 PX9 sing 304 n n C3 H7 PX9 sing 305 n n C4 H8 PX9 sing 306 n n C4 H9 PX9 sing 307 n n C9 H10 PX9 sing 308 n n C10 H11 PX9 sing 309 n n C8 H12 PX9 sing 310 n n C7 H13 PX9 sing 311 n n C13 H14 PX9 sing 312 n n C13 H15 PX9 sing 313 n n C14 H16 PX9 sing 314 n n C14 H17 PX9 sing 315 n n C15 H18 PX9 sing 316 n n C15 H19 PX9 sing 317 n n C18 H21 PX9 sing 318 n n C18 H22 PX9 sing 319 n n C19 H23 PX9 sing 320 n n C19 H24 PX9 sing 321 n n C21 H25 PX9 sing 322 n n C21 H26 PX9 sing 323 n n C17 H27 PX9 sing 324 n n C17 H28 PX9 sing 325 n n # _atom_sites.entry_id 4Y0Q _atom_sites.fract_transf_matrix[1][1] 0.018683 _atom_sites.fract_transf_matrix[1][2] 0.010787 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PX9 A 1 201 1 PX9 PX9 . C 3 HOH A 1 301 50 HOH HOH . C 3 HOH A 2 302 3 HOH HOH . C 3 HOH A 3 303 36 HOH HOH . C 3 HOH A 4 304 8 HOH HOH . C 3 HOH A 5 305 22 HOH HOH . C 3 HOH A 6 306 3 HOH HOH . C 3 HOH A 7 307 1 HOH HOH . C 3 HOH A 8 308 1 HOH HOH . C 3 HOH A 9 309 1 HOH HOH . C 3 HOH A 10 310 13 HOH HOH . C 3 HOH A 11 311 9 HOH HOH . C 3 HOH A 12 312 11 HOH HOH . C 3 HOH A 13 313 57 HOH HOH . C 3 HOH A 14 314 10 HOH HOH . C 3 HOH A 15 315 14 HOH HOH . C 3 HOH A 16 316 48 HOH HOH . C 3 HOH A 17 317 5 HOH HOH . C 3 HOH A 18 318 41 HOH HOH . C 3 HOH A 19 319 15 HOH HOH . C 3 HOH A 20 320 30 HOH HOH . C 3 HOH A 21 321 17 HOH HOH . C 3 HOH A 22 322 16 HOH HOH . C 3 HOH A 23 323 13 HOH HOH . C 3 HOH A 24 324 15 HOH HOH . C 3 HOH A 25 325 11 HOH HOH . C 3 HOH A 26 326 6 HOH HOH . C 3 HOH A 27 327 8 HOH HOH . C 3 HOH A 28 328 3 HOH HOH . C 3 HOH A 29 329 24 HOH HOH . C 3 HOH A 30 330 45 HOH HOH . C 3 HOH A 31 331 19 HOH HOH . C 3 HOH A 32 332 33 HOH HOH . C 3 HOH A 33 333 34 HOH HOH . C 3 HOH A 34 334 21 HOH HOH . C 3 HOH A 35 335 44 HOH HOH . C 3 HOH A 36 336 39 HOH HOH . C 3 HOH A 37 337 32 HOH HOH . C 3 HOH A 38 338 11 HOH HOH . C 3 HOH A 39 339 10 HOH HOH . C 3 HOH A 40 340 5 HOH HOH . C 3 HOH A 41 341 6 HOH HOH . C 3 HOH A 42 342 6 HOH HOH . C 3 HOH A 43 343 2 HOH HOH . C 3 HOH A 44 344 7 HOH HOH . C 3 HOH A 45 345 53 HOH HOH . C 3 HOH A 46 346 56 HOH HOH . C 3 HOH A 47 347 18 HOH HOH . C 3 HOH A 48 348 51 HOH HOH . C 3 HOH A 49 349 27 HOH HOH . C 3 HOH A 50 350 20 HOH HOH . C 3 HOH A 51 351 29 HOH HOH . C 3 HOH A 52 352 7 HOH HOH . C 3 HOH A 53 353 2 HOH HOH . C 3 HOH A 54 354 22 HOH HOH . C 3 HOH A 55 355 8 HOH HOH . C 3 HOH A 56 356 38 HOH HOH . C 3 HOH A 57 357 13 HOH HOH . C 3 HOH A 58 358 12 HOH HOH . C 3 HOH A 59 359 17 HOH HOH . C 3 HOH A 60 360 4 HOH HOH . C 3 HOH A 61 361 23 HOH HOH . C 3 HOH A 62 362 25 HOH HOH . C 3 HOH A 63 363 55 HOH HOH . C 3 HOH A 64 364 26 HOH HOH . C 3 HOH A 65 365 14 HOH HOH . C 3 HOH A 66 366 28 HOH HOH . C 3 HOH A 67 367 7 HOH HOH . C 3 HOH A 68 368 16 HOH HOH . C 3 HOH A 69 369 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PX9 . . . B 2 -4.396 18.059 16.434 1 26.93 ? C1 PX9 201 A 1 HETATM 2 C C2 PX9 . . . B 2 -3.984 16.607 16.473 1 27.62 ? C2 PX9 201 A 1 HETATM 3 C C3 PX9 . . . B 2 -3.43 16.282 17.823 1 28.71 ? C3 PX9 201 A 1 HETATM 4 C C4 PX9 . . . B 2 -2.807 14.909 17.838 1 30.31 ? C4 PX9 201 A 1 HETATM 5 O O5 PX9 . . . B 2 -3.787 13.945 18.063 1 31.49 ? O5 PX9 201 A 1 HETATM 6 C C6 PX9 . . . B 2 -3.448 12.667 18.423 1 31.25 ? C6 PX9 201 A 1 HETATM 7 C C9 PX9 . . . B 2 -4.214 11.629 17.935 1 33.92 ? C9 PX9 201 A 1 HETATM 8 C C10 PX9 . . . B 2 -3.927 10.321 18.253 1 33.96 ? C10 PX9 201 A 1 HETATM 9 C C11 PX9 . . . B 2 -2.861 10.033 19.081 1 33.68 ? C11 PX9 201 A 1 HETATM 10 C C8 PX9 . . . B 2 -2.084 11.075 19.587 1 30.97 ? C8 PX9 201 A 1 HETATM 11 C C7 PX9 . . . B 2 -2.389 12.393 19.249 1 31.73 ? C7 PX9 201 A 1 HETATM 12 O O12 PX9 . . . B 2 -2.562 8.738 19.404 1 35.92 ? O12 PX9 201 A 1 HETATM 13 C C13 PX9 . . . B 2 -3.631 7.791 19.516 1 41.79 ? C13 PX9 201 A 1 HETATM 14 C C14 PX9 . . . B 2 -3.046 6.462 19.979 1 45.36 ? C14 PX9 201 A 1 HETATM 15 C C15 PX9 . . . B 2 -1.755 6.161 19.182 1 49.04 ? C15 PX9 201 A 1 HETATM 16 N N16 PX9 . . . B 2 -1.381 4.74 19.339 1 54.94 ? N16 PX9 201 A 1 HETATM 17 C C18 PX9 . . . B 2 -1.137 4.418 20.754 1 56.68 ? C18 PX9 201 A 1 HETATM 18 C C19 PX9 . . . B 2 -0.715 2.946 20.891 1 58.31 ? C19 PX9 201 A 1 HETATM 19 O O20 PX9 . . . B 2 0.466 2.734 20.121 1 58.46 ? O20 PX9 201 A 1 HETATM 20 C C21 PX9 . . . B 2 0.207 2.999 18.734 1 58.95 ? C21 PX9 201 A 1 HETATM 21 C C17 PX9 . . . B 2 -0.172 4.471 18.551 1 56.73 ? C17 PX9 201 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #