data_4Y0R # _model_server_result.job_id CyMYu0YYM6ugcnzY6u0tRA _model_server_result.datetime_utc '2024-11-15 09:50:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4Y0R # _exptl.entry_id 4Y0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.401 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Pramocaine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y0R _cell.length_a 53.735 _cell.length_b 53.735 _cell.length_c 110.738 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 73.825333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C17 H27 N O3' _chem_comp.formula_weight 293.401 _chem_comp.id PX9 _chem_comp.mon_nstd_flag . _chem_comp.name Pramocaine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PX9 sing 277 n n C2 C3 PX9 sing 278 n n C3 C4 PX9 sing 279 n n C4 O5 PX9 sing 280 n n C9 C10 PX9 doub 281 n y C9 C6 PX9 sing 282 n y O5 C6 PX9 sing 283 n n C10 C11 PX9 sing 284 n y C6 C7 PX9 doub 285 n y C17 C21 PX9 sing 286 n n C17 N16 PX9 sing 287 n n C21 O20 PX9 sing 288 n n C11 O12 PX9 sing 289 n n C11 C8 PX9 doub 290 n y C15 N16 PX9 sing 291 n n C15 C14 PX9 sing 292 n n C7 C8 PX9 sing 293 n y N16 C18 PX9 sing 294 n n O12 C13 PX9 sing 295 n n C13 C14 PX9 sing 296 n n O20 C19 PX9 sing 297 n n C18 C19 PX9 sing 298 n n C1 H1 PX9 sing 299 n n C1 H2 PX9 sing 300 n n C1 H3 PX9 sing 301 n n C2 H4 PX9 sing 302 n n C2 H5 PX9 sing 303 n n C3 H6 PX9 sing 304 n n C3 H7 PX9 sing 305 n n C4 H8 PX9 sing 306 n n C4 H9 PX9 sing 307 n n C9 H10 PX9 sing 308 n n C10 H11 PX9 sing 309 n n C8 H12 PX9 sing 310 n n C7 H13 PX9 sing 311 n n C13 H14 PX9 sing 312 n n C13 H15 PX9 sing 313 n n C14 H16 PX9 sing 314 n n C14 H17 PX9 sing 315 n n C15 H18 PX9 sing 316 n n C15 H19 PX9 sing 317 n n C18 H21 PX9 sing 318 n n C18 H22 PX9 sing 319 n n C19 H23 PX9 sing 320 n n C19 H24 PX9 sing 321 n n C21 H25 PX9 sing 322 n n C21 H26 PX9 sing 323 n n C17 H27 PX9 sing 324 n n C17 H28 PX9 sing 325 n n # _atom_sites.entry_id 4Y0R _atom_sites.fract_transf_matrix[1][1] 0.01861 _atom_sites.fract_transf_matrix[1][2] 0.010744 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PX9 A 1 201 1 PX9 PX9 . C 3 HOH A 1 301 44 HOH HOH . C 3 HOH A 2 302 9 HOH HOH . C 3 HOH A 3 303 13 HOH HOH . C 3 HOH A 4 304 16 HOH HOH . C 3 HOH A 5 305 8 HOH HOH . C 3 HOH A 6 306 5 HOH HOH . C 3 HOH A 7 307 20 HOH HOH . C 3 HOH A 8 308 2 HOH HOH . C 3 HOH A 9 309 4 HOH HOH . C 3 HOH A 10 310 47 HOH HOH . C 3 HOH A 11 311 6 HOH HOH . C 3 HOH A 12 312 45 HOH HOH . C 3 HOH A 13 313 10 HOH HOH . C 3 HOH A 14 314 8 HOH HOH . C 3 HOH A 15 315 46 HOH HOH . C 3 HOH A 16 316 39 HOH HOH . C 3 HOH A 17 317 48 HOH HOH . C 3 HOH A 18 318 15 HOH HOH . C 3 HOH A 19 319 32 HOH HOH . C 3 HOH A 20 320 50 HOH HOH . C 3 HOH A 21 321 43 HOH HOH . C 3 HOH A 22 322 2 HOH HOH . C 3 HOH A 23 323 3 HOH HOH . C 3 HOH A 24 324 5 HOH HOH . C 3 HOH A 25 325 7 HOH HOH . C 3 HOH A 26 326 8 HOH HOH . C 3 HOH A 27 327 13 HOH HOH . C 3 HOH A 28 328 14 HOH HOH . C 3 HOH A 29 329 3 HOH HOH . C 3 HOH A 30 330 7 HOH HOH . C 3 HOH A 31 331 11 HOH HOH . C 3 HOH A 32 332 15 HOH HOH . C 3 HOH A 33 333 19 HOH HOH . C 3 HOH A 34 334 14 HOH HOH . C 3 HOH A 35 335 21 HOH HOH . C 3 HOH A 36 336 23 HOH HOH . C 3 HOH A 37 337 6 HOH HOH . C 3 HOH A 38 338 12 HOH HOH . C 3 HOH A 39 339 16 HOH HOH . C 3 HOH A 40 340 18 HOH HOH . C 3 HOH A 41 341 24 HOH HOH . C 3 HOH A 42 342 25 HOH HOH . C 3 HOH A 43 343 26 HOH HOH . C 3 HOH A 44 344 27 HOH HOH . C 3 HOH A 45 345 28 HOH HOH . C 3 HOH A 46 346 33 HOH HOH . C 3 HOH A 47 347 34 HOH HOH . C 3 HOH A 48 348 35 HOH HOH . C 3 HOH A 49 349 38 HOH HOH . C 3 HOH A 50 350 40 HOH HOH . C 3 HOH A 51 351 41 HOH HOH . C 3 HOH A 52 352 42 HOH HOH . C 3 HOH A 53 353 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PX9 . . . B 2 -4.238 17.556 16.022 1 30.57 ? C1 PX9 201 A 1 HETATM 2 C C2 PX9 . . . B 2 -3.997 16.807 17.313 1 31.44 ? C2 PX9 201 A 1 HETATM 3 C C3 PX9 . . . B 2 -2.851 15.851 17.175 1 33.58 ? C3 PX9 201 A 1 HETATM 4 C C4 PX9 . . . B 2 -2.898 14.739 18.194 1 34.74 ? C4 PX9 201 A 1 HETATM 5 O O5 PX9 . . . B 2 -3.418 13.579 17.596 1 35.52 ? O5 PX9 201 A 1 HETATM 6 C C6 PX9 . . . B 2 -3.196 12.353 18.138 1 37.06 ? C6 PX9 201 A 1 HETATM 7 C C9 PX9 . . . B 2 -4.152 11.368 17.969 1 37.76 ? C9 PX9 201 A 1 HETATM 8 C C10 PX9 . . . B 2 -3.973 10.095 18.485 1 36.85 ? C10 PX9 201 A 1 HETATM 9 C C11 PX9 . . . B 2 -2.814 9.793 19.157 1 37.96 ? C11 PX9 201 A 1 HETATM 10 C C8 PX9 . . . B 2 -1.83 10.771 19.321 1 37.01 ? C8 PX9 201 A 1 HETATM 11 C C7 PX9 . . . B 2 -2.019 12.046 18.791 1 38.42 ? C7 PX9 201 A 1 HETATM 12 O O12 PX9 . . . B 2 -2.624 8.546 19.679 1 43.31 ? O12 PX9 201 A 1 HETATM 13 C C13 PX9 . . . B 2 -2.862 7.385 18.877 1 50.11 ? C13 PX9 201 A 1 HETATM 14 C C14 PX9 . . . B 2 -2.42 6.15 19.677 1 54.76 ? C14 PX9 201 A 1 HETATM 15 C C15 PX9 . . . B 2 -1.064 5.666 19.118 1 58.98 ? C15 PX9 201 A 1 HETATM 16 N N16 PX9 . . . B 2 -0.924 4.223 19.358 1 63.83 ? N16 PX9 201 A 1 HETATM 17 C C18 PX9 . . . B 2 0.077 3.988 20.397 1 65.69 ? C18 PX9 201 A 1 HETATM 18 C C19 PX9 . . . B 2 0.245 2.481 20.617 1 66.36 ? C19 PX9 201 A 1 HETATM 19 O O20 PX9 . . . B 2 -0.667 1.755 19.785 1 69.54 ? O20 PX9 201 A 1 HETATM 20 C C21 PX9 . . . B 2 -0.412 2.032 18.396 1 68.41 ? C21 PX9 201 A 1 HETATM 21 C C17 PX9 . . . B 2 -0.549 3.538 18.115 1 67.74 ? C17 PX9 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #