data_4Y0S
#
_model_server_result.job_id            wFUIxT9ubetBpNF-7SCyJg 
_model_server_result.datetime_utc      '2024-11-15 09:40:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y0s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4Y0S 
#
_exptl.entry_id    4Y0S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              293.401 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Pramocaine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4Y0S 
_cell.length_a            53.113 
_cell.length_b            53.113 
_cell.length_c            111.148 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y0S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C17 H27 N O3' 
_chem_comp.formula_weight    293.401 
_chem_comp.id                PX9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Pramocaine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PX9 sing 277 n n 
C2 C3 PX9 sing 278 n n 
C3 C4 PX9 sing 279 n n 
C4 O5 PX9 sing 280 n n 
C9 C10 PX9 doub 281 n y 
C9 C6 PX9 sing 282 n y 
O5 C6 PX9 sing 283 n n 
C10 C11 PX9 sing 284 n y 
C6 C7 PX9 doub 285 n y 
C17 C21 PX9 sing 286 n n 
C17 N16 PX9 sing 287 n n 
C21 O20 PX9 sing 288 n n 
C11 O12 PX9 sing 289 n n 
C11 C8 PX9 doub 290 n y 
C15 N16 PX9 sing 291 n n 
C15 C14 PX9 sing 292 n n 
C7 C8 PX9 sing 293 n y 
N16 C18 PX9 sing 294 n n 
O12 C13 PX9 sing 295 n n 
C13 C14 PX9 sing 296 n n 
O20 C19 PX9 sing 297 n n 
C18 C19 PX9 sing 298 n n 
C1 H1 PX9 sing 299 n n 
C1 H2 PX9 sing 300 n n 
C1 H3 PX9 sing 301 n n 
C2 H4 PX9 sing 302 n n 
C2 H5 PX9 sing 303 n n 
C3 H6 PX9 sing 304 n n 
C3 H7 PX9 sing 305 n n 
C4 H8 PX9 sing 306 n n 
C4 H9 PX9 sing 307 n n 
C9 H10 PX9 sing 308 n n 
C10 H11 PX9 sing 309 n n 
C8 H12 PX9 sing 310 n n 
C7 H13 PX9 sing 311 n n 
C13 H14 PX9 sing 312 n n 
C13 H15 PX9 sing 313 n n 
C14 H16 PX9 sing 314 n n 
C14 H17 PX9 sing 315 n n 
C15 H18 PX9 sing 316 n n 
C15 H19 PX9 sing 317 n n 
C18 H21 PX9 sing 318 n n 
C18 H22 PX9 sing 319 n n 
C19 H23 PX9 sing 320 n n 
C19 H24 PX9 sing 321 n n 
C21 H25 PX9 sing 322 n n 
C21 H26 PX9 sing 323 n n 
C17 H27 PX9 sing 324 n n 
C17 H28 PX9 sing 325 n n 
#
_atom_sites.entry_id                     4Y0S 
_atom_sites.fract_transf_matrix[1][1]    0.018828 
_atom_sites.fract_transf_matrix[1][2]    0.01087 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008997 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PX9 A 1 201 1 PX9 PX9 . 
C 3 SO4 A 1 202 1 SO4 SO4 . 
D 3 SO4 A 1 203 2 SO4 SO4 . 
E 4 HOH A 1 301 50 HOH HOH . 
E 4 HOH A 2 302 13 HOH HOH . 
E 4 HOH A 3 303 99 HOH HOH . 
E 4 HOH A 4 304 66 HOH HOH . 
E 4 HOH A 5 305 6 HOH HOH . 
E 4 HOH A 6 306 11 HOH HOH . 
E 4 HOH A 7 307 65 HOH HOH . 
E 4 HOH A 8 308 34 HOH HOH . 
E 4 HOH A 9 309 73 HOH HOH . 
E 4 HOH A 10 310 51 HOH HOH . 
E 4 HOH A 11 311 14 HOH HOH . 
E 4 HOH A 12 312 92 HOH HOH . 
E 4 HOH A 13 313 28 HOH HOH . 
E 4 HOH A 14 314 44 HOH HOH . 
E 4 HOH A 15 315 2 HOH HOH . 
E 4 HOH A 16 316 69 HOH HOH . 
E 4 HOH A 17 317 91 HOH HOH . 
E 4 HOH A 18 318 59 HOH HOH . 
E 4 HOH A 19 319 17 HOH HOH . 
E 4 HOH A 20 320 42 HOH HOH . 
E 4 HOH A 21 321 106 HOH HOH . 
E 4 HOH A 22 322 3 HOH HOH . 
E 4 HOH A 23 323 30 HOH HOH . 
E 4 HOH A 24 324 56 HOH HOH . 
E 4 HOH A 25 325 27 HOH HOH . 
E 4 HOH A 26 326 88 HOH HOH . 
E 4 HOH A 27 327 10 HOH HOH . 
E 4 HOH A 28 328 67 HOH HOH . 
E 4 HOH A 29 329 35 HOH HOH . 
E 4 HOH A 30 330 45 HOH HOH . 
E 4 HOH A 31 331 60 HOH HOH . 
E 4 HOH A 32 332 103 HOH HOH . 
E 4 HOH A 33 333 68 HOH HOH . 
E 4 HOH A 34 334 81 HOH HOH . 
E 4 HOH A 35 335 64 HOH HOH . 
E 4 HOH A 36 336 21 HOH HOH . 
E 4 HOH A 37 337 54 HOH HOH . 
E 4 HOH A 38 338 78 HOH HOH . 
E 4 HOH A 39 339 70 HOH HOH . 
E 4 HOH A 40 340 93 HOH HOH . 
E 4 HOH A 41 341 58 HOH HOH . 
E 4 HOH A 42 342 38 HOH HOH . 
E 4 HOH A 43 343 48 HOH HOH . 
E 4 HOH A 44 344 96 HOH HOH . 
E 4 HOH A 45 345 97 HOH HOH . 
E 4 HOH A 46 346 94 HOH HOH . 
E 4 HOH A 47 347 7 HOH HOH . 
E 4 HOH A 48 348 8 HOH HOH . 
E 4 HOH A 49 349 9 HOH HOH . 
E 4 HOH A 50 350 12 HOH HOH . 
E 4 HOH A 51 351 15 HOH HOH . 
E 4 HOH A 52 352 16 HOH HOH . 
E 4 HOH A 53 353 18 HOH HOH . 
E 4 HOH A 54 354 19 HOH HOH . 
E 4 HOH A 55 355 20 HOH HOH . 
E 4 HOH A 56 356 23 HOH HOH . 
E 4 HOH A 57 357 24 HOH HOH . 
E 4 HOH A 58 358 25 HOH HOH . 
E 4 HOH A 59 359 26 HOH HOH . 
E 4 HOH A 60 360 29 HOH HOH . 
E 4 HOH A 61 361 31 HOH HOH . 
E 4 HOH A 62 362 33 HOH HOH . 
E 4 HOH A 63 363 36 HOH HOH . 
E 4 HOH A 64 364 37 HOH HOH . 
E 4 HOH A 65 365 39 HOH HOH . 
E 4 HOH A 66 366 40 HOH HOH . 
E 4 HOH A 67 367 41 HOH HOH . 
E 4 HOH A 68 368 43 HOH HOH . 
E 4 HOH A 69 369 46 HOH HOH . 
E 4 HOH A 70 370 47 HOH HOH . 
E 4 HOH A 71 371 49 HOH HOH . 
E 4 HOH A 72 372 52 HOH HOH . 
E 4 HOH A 73 373 53 HOH HOH . 
E 4 HOH A 74 374 55 HOH HOH . 
E 4 HOH A 75 375 61 HOH HOH . 
E 4 HOH A 76 376 62 HOH HOH . 
E 4 HOH A 77 377 63 HOH HOH . 
E 4 HOH A 78 378 74 HOH HOH . 
E 4 HOH A 79 379 75 HOH HOH . 
E 4 HOH A 80 380 76 HOH HOH . 
E 4 HOH A 81 381 77 HOH HOH . 
E 4 HOH A 82 382 79 HOH HOH . 
E 4 HOH A 83 383 80 HOH HOH . 
E 4 HOH A 84 384 82 HOH HOH . 
E 4 HOH A 85 385 83 HOH HOH . 
E 4 HOH A 86 386 84 HOH HOH . 
E 4 HOH A 87 387 85 HOH HOH . 
E 4 HOH A 88 388 86 HOH HOH . 
E 4 HOH A 89 389 87 HOH HOH . 
E 4 HOH A 90 390 89 HOH HOH . 
E 4 HOH A 91 391 90 HOH HOH . 
E 4 HOH A 92 392 95 HOH HOH . 
E 4 HOH A 93 393 98 HOH HOH . 
E 4 HOH A 94 394 100 HOH HOH . 
E 4 HOH A 95 395 101 HOH HOH . 
E 4 HOH A 96 396 102 HOH HOH . 
E 4 HOH A 97 397 104 HOH HOH . 
E 4 HOH A 98 398 105 HOH HOH . 
E 4 HOH A 99 399 107 HOH HOH . 
E 4 HOH A 100 400 108 HOH HOH . 
E 4 HOH A 101 401 109 HOH HOH . 
E 4 HOH A 102 402 110 HOH HOH . 
E 4 HOH A 103 403 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PX9 . . . B 2 13.302 12.328 -20.582 1 26.14 ? C1 PX9 201 A 1 
HETATM 2 C C2 PX9 . . . B 2 12.662 11.365 -19.619 1 25.53 ? C2 PX9 201 A 1 
HETATM 3 C C3 PX9 . . . B 2 11.531 10.653 -20.312 1 27.17 ? C3 PX9 201 A 1 
HETATM 4 C C4 PX9 . . . B 2 10.923 9.631 -19.37 1 27.09 ? C4 PX9 201 A 1 
HETATM 5 O O5 PX9 . . . B 2 9.576 9.95 -19.137 1 27.88 ? O5 PX9 201 A 1 
HETATM 6 C C6 PX9 . . . B 2 8.723 9.002 -18.691 1 25.3 ? C6 PX9 201 A 1 
HETATM 7 C C9 PX9 . . . B 2 7.433 8.958 -19.189 1 27.5 ? C9 PX9 201 A 1 
HETATM 8 C C10 PX9 . . . B 2 6.56 7.987 -18.761 1 28.25 ? C10 PX9 201 A 1 
HETATM 9 C C11 PX9 . . . B 2 6.955 7.075 -17.808 1 27.87 ? C11 PX9 201 A 1 
HETATM 10 C C8 PX9 . . . B 2 8.251 7.121 -17.31 1 26.41 ? C8 PX9 201 A 1 
HETATM 11 C C7 PX9 . . . B 2 9.133 8.099 -17.759 1 25.47 ? C7 PX9 201 A 1 
HETATM 12 O O12 PX9 . . . B 2 6.086 6.116 -17.368 1 31.65 ? O12 PX9 201 A 1 
HETATM 13 C C13 PX9 . . . B 2 4.702 6.464 -17.184 1 34.16 ? C13 PX9 201 A 1 
HETATM 14 C C14 PX9 . . . B 2 3.94 5.261 -16.597 1 36.59 ? C14 PX9 201 A 1 
HETATM 15 C C15 PX9 . . . B 2 4.209 4.003 -17.461 1 39.1 ? C15 PX9 201 A 1 
HETATM 16 N N16 PX9 . . . B 2 3.09 3.051 -17.356 1 41.99 ? N16 PX9 201 A 1 
HETATM 17 C C18 PX9 . . . B 2 3.254 2.227 -16.164 1 43.54 ? C18 PX9 201 A 1 
HETATM 18 C C19 PX9 . . . B 2 2.106 1.203 -16.081 1 45.46 ? C19 PX9 201 A 1 
HETATM 19 O O20 PX9 . . . B 2 2.075 0.404 -17.272 1 45.95 ? O20 PX9 201 A 1 
HETATM 20 C C21 PX9 . . . B 2 1.868 1.226 -18.433 1 45.66 ? C21 PX9 201 A 1 
HETATM 21 C C17 PX9 . . . B 2 3.02 2.232 -18.565 1 44.42 ? C17 PX9 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#