data_4Y0W # _model_server_result.job_id ZPWUkQCHclyfzJWlxvyo8A _model_server_result.datetime_utc '2024-12-27 00:52:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 4Y0W # _exptl.entry_id 4Y0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y0W _cell.length_a 78.03 _cell.length_b 198.443 _cell.length_c 161.35 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 198.443 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 14 A ASP 8 1_555 G NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A OG1 THR 17 A THR 11 1_555 G NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc3 A O ALA 19 A ALA 13 1_555 G NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc4 A OD1 ASP 123 A ASP 117 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 A O ALA 124 A ALA 118 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc6 A O GLU 128 A GLU 122 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc7 A OH TYR 175 A TYR 169 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc8 F NA NA . A NA 301 1_555 J O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc9 G NA NA . A NA 302 1_555 J O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc10 B OD1 ASP 123 B ASP 117 1_555 H NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc11 B O ALA 124 B ALA 118 1_555 H NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc12 B O GLU 128 B GLU 122 1_555 H NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc13 B OH TYR 175 B TYR 169 1_555 H NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc14 C OD1 ASP 123 C ASP 117 1_555 I NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc15 C O ALA 124 C ALA 118 1_555 I NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc16 C O GLU 128 C GLU 122 1_555 I NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc17 C OH TYR 175 C TYR 169 1_555 I NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc18 I NA NA . C NA 301 1_555 L O HOH . C HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Y0W _atom_sites.fract_transf_matrix[1][1] 0.012816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NA A 1 301 1 NA NA . G 2 NA A 1 302 4 NA NA . H 2 NA B 1 301 2 NA NA . I 2 NA C 1 301 3 NA NA . J 3 HOH A 1 401 219 HOH HOH . J 3 HOH A 2 402 2 HOH HOH . J 3 HOH A 3 403 43 HOH HOH . J 3 HOH A 4 404 66 HOH HOH . J 3 HOH A 5 405 202 HOH HOH . J 3 HOH A 6 406 62 HOH HOH . J 3 HOH A 7 407 44 HOH HOH . J 3 HOH A 8 408 184 HOH HOH . J 3 HOH A 9 409 131 HOH HOH . J 3 HOH A 10 410 130 HOH HOH . J 3 HOH A 11 411 32 HOH HOH . J 3 HOH A 12 412 185 HOH HOH . J 3 HOH A 13 413 111 HOH HOH . J 3 HOH A 14 414 168 HOH HOH . J 3 HOH A 15 415 99 HOH HOH . J 3 HOH A 16 416 104 HOH HOH . J 3 HOH A 17 417 84 HOH HOH . J 3 HOH A 18 418 141 HOH HOH . J 3 HOH A 19 419 49 HOH HOH . J 3 HOH A 20 420 1 HOH HOH . J 3 HOH A 21 421 5 HOH HOH . J 3 HOH A 22 422 18 HOH HOH . J 3 HOH A 23 423 46 HOH HOH . J 3 HOH A 24 424 73 HOH HOH . J 3 HOH A 25 425 98 HOH HOH . J 3 HOH A 26 426 101 HOH HOH . J 3 HOH A 27 427 5 HOH HOH . J 3 HOH A 28 428 6 HOH HOH . J 3 HOH A 29 429 14 HOH HOH . J 3 HOH A 30 430 19 HOH HOH . J 3 HOH A 31 431 23 HOH HOH . J 3 HOH A 32 432 28 HOH HOH . J 3 HOH A 33 433 29 HOH HOH . J 3 HOH A 34 434 36 HOH HOH . J 3 HOH A 35 435 40 HOH HOH . J 3 HOH A 36 436 46 HOH HOH . J 3 HOH A 37 437 53 HOH HOH . J 3 HOH A 38 438 58 HOH HOH . J 3 HOH A 39 439 89 HOH HOH . J 3 HOH A 40 440 93 HOH HOH . J 3 HOH A 41 441 132 HOH HOH . J 3 HOH A 42 442 156 HOH HOH . J 3 HOH A 43 443 204 HOH HOH . J 3 HOH A 44 444 212 HOH HOH . J 3 HOH A 45 445 222 HOH HOH . K 3 HOH B 1 401 8 HOH HOH . K 3 HOH B 2 402 10 HOH HOH . K 3 HOH B 3 403 52 HOH HOH . K 3 HOH B 4 404 53 HOH HOH . K 3 HOH B 5 405 55 HOH HOH . K 3 HOH B 6 406 76 HOH HOH . K 3 HOH B 7 407 92 HOH HOH . K 3 HOH B 8 408 93 HOH HOH . K 3 HOH B 9 409 96 HOH HOH . K 3 HOH B 10 410 99 HOH HOH . K 3 HOH B 11 411 100 HOH HOH . K 3 HOH B 12 412 4 HOH HOH . K 3 HOH B 13 413 41 HOH HOH . K 3 HOH B 14 414 56 HOH HOH . K 3 HOH B 15 415 81 HOH HOH . K 3 HOH B 16 416 121 HOH HOH . K 3 HOH B 17 417 127 HOH HOH . K 3 HOH B 18 418 128 HOH HOH . K 3 HOH B 19 419 136 HOH HOH . K 3 HOH B 20 420 142 HOH HOH . K 3 HOH B 21 421 149 HOH HOH . K 3 HOH B 22 422 164 HOH HOH . K 3 HOH B 23 423 188 HOH HOH . K 3 HOH B 24 424 223 HOH HOH . K 3 HOH B 25 425 239 HOH HOH . L 3 HOH C 1 401 178 HOH HOH . L 3 HOH C 2 402 3 HOH HOH . L 3 HOH C 3 403 42 HOH HOH . L 3 HOH C 4 404 12 HOH HOH . L 3 HOH C 5 405 187 HOH HOH . L 3 HOH C 6 406 37 HOH HOH . L 3 HOH C 7 407 34 HOH HOH . L 3 HOH C 8 408 20 HOH HOH . L 3 HOH C 9 409 70 HOH HOH . L 3 HOH C 10 410 35 HOH HOH . L 3 HOH C 11 411 85 HOH HOH . L 3 HOH C 12 412 4 HOH HOH . L 3 HOH C 13 413 6 HOH HOH . L 3 HOH C 14 414 20 HOH HOH . L 3 HOH C 15 415 36 HOH HOH . L 3 HOH C 16 416 57 HOH HOH . L 3 HOH C 17 417 63 HOH HOH . L 3 HOH C 18 418 90 HOH HOH . L 3 HOH C 19 419 94 HOH HOH . L 3 HOH C 20 420 30 HOH HOH . L 3 HOH C 21 421 48 HOH HOH . L 3 HOH C 22 422 51 HOH HOH . L 3 HOH C 23 423 57 HOH HOH . L 3 HOH C 24 424 76 HOH HOH . L 3 HOH C 25 425 91 HOH HOH . L 3 HOH C 26 426 101 HOH HOH . L 3 HOH C 27 427 108 HOH HOH . L 3 HOH C 28 428 118 HOH HOH . L 3 HOH C 29 429 144 HOH HOH . L 3 HOH C 30 430 208 HOH HOH . L 3 HOH C 31 431 213 HOH HOH . L 3 HOH C 32 432 225 HOH HOH . L 3 HOH C 33 433 237 HOH HOH . M 3 HOH D 1 301 97 HOH HOH . M 3 HOH D 2 302 8 HOH HOH . M 3 HOH D 3 303 47 HOH HOH . M 3 HOH D 4 304 16 HOH HOH . M 3 HOH D 5 305 59 HOH HOH . M 3 HOH D 6 306 38 HOH HOH . M 3 HOH D 7 307 67 HOH HOH . M 3 HOH D 8 308 18 HOH HOH . M 3 HOH D 9 309 22 HOH HOH . M 3 HOH D 10 310 33 HOH HOH . M 3 HOH D 11 311 50 HOH HOH . M 3 HOH D 12 312 71 HOH HOH . M 3 HOH D 13 313 103 HOH HOH . M 3 HOH D 14 314 117 HOH HOH . M 3 HOH D 15 315 135 HOH HOH . M 3 HOH D 16 316 143 HOH HOH . M 3 HOH D 17 317 147 HOH HOH . M 3 HOH D 18 318 153 HOH HOH . M 3 HOH D 19 319 197 HOH HOH . N 3 HOH E 1 301 166 HOH HOH . N 3 HOH E 2 302 30 HOH HOH . N 3 HOH E 3 303 78 HOH HOH . N 3 HOH E 4 304 21 HOH HOH . N 3 HOH E 5 305 42 HOH HOH . N 3 HOH E 6 306 67 HOH HOH . N 3 HOH E 7 307 87 HOH HOH . N 3 HOH E 8 308 110 HOH HOH . N 3 HOH E 9 309 126 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.004 _atom_site.Cartn_y 53.598 _atom_site.Cartn_z 22.32 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.67 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 1 #