data_4Y15 # _model_server_result.job_id 09Zn5OjiKnx5MasHLig48g _model_server_result.datetime_utc '2024-12-09 10:09:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4Y15 # _exptl.entry_id 4Y15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.23 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y15 _cell.length_a 88.62 _cell.length_b 92.694 _cell.length_c 119.698 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H,I,K 1 1 B,F,G,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -88.62 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C10 H15 N O4' _chem_comp.formula_weight 213.23 _chem_comp.id 482 _chem_comp.mon_nstd_flag . _chem_comp.name 3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C11 482 doub 1 n n O9 C8 482 doub 2 n n C10 C8 482 sing 3 n n C10 C11 482 sing 4 n n C8 N7 482 sing 5 n n C11 C13 482 sing 6 n n N7 C1 482 sing 7 n n C1 C5 482 sing 8 n n C1 C2 482 sing 9 n n C5 C4 482 sing 10 n n C15 C14 482 sing 11 n n C13 C14 482 sing 12 n n C2 O6 482 doub 13 n n C2 OAP 482 sing 14 n n C4 OAP 482 sing 15 n n C15 H1 482 sing 16 n n C15 H2 482 sing 17 n n C15 H3 482 sing 18 n n C14 H4 482 sing 19 n n C14 H5 482 sing 20 n n C13 H6 482 sing 21 n n C13 H7 482 sing 22 n n C10 H8 482 sing 23 n n C10 H9 482 sing 24 n n N7 H10 482 sing 25 n n C1 H11 482 sing 26 n n C5 H12 482 sing 27 n n C5 H13 482 sing 28 n n C4 H14 482 sing 29 n n C4 H15 482 sing 30 n n # _atom_sites.entry_id 4Y15 _atom_sites.fract_transf_matrix[1][1] 0.011284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 301 301 SO4 SO4 . E 3 482 A 1 302 401 482 OHN . F 2 SO4 B 1 301 301 SO4 SO4 . G 3 482 B 1 302 401 482 OHN . H 3 482 C 1 301 301 482 OHN . I 4 HOH A 1 501 501 HOH HOH . J 4 HOH B 1 501 501 HOH HOH . J 4 HOH B 2 502 502 HOH HOH . J 4 HOH B 3 503 503 HOH HOH . K 4 HOH C 1 401 401 HOH HOH . K 4 HOH C 2 402 402 HOH HOH . K 4 HOH C 3 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 482 . . . H 3 16.566 25.701 -66.081 1 66.8 ? C15 482 301 C 1 HETATM 2 C C14 482 . . . H 3 15.065 25.762 -66.26 1 67.93 ? C14 482 301 C 1 HETATM 3 C C13 482 . . . H 3 14.458 26.697 -65.239 1 70.52 ? C13 482 301 C 1 HETATM 4 C C11 482 . . . H 3 13.242 26.029 -64.639 1 69.81 ? C11 482 301 C 1 HETATM 5 O O12 482 . . . H 3 13.357 24.964 -64.064 1 67.17 ? O12 482 301 C 1 HETATM 6 C C10 482 . . . H 3 11.884 26.684 -64.757 1 66.23 ? C10 482 301 C 1 HETATM 7 C C8 482 . . . H 3 11.273 26.378 -66.107 1 68.48 ? C8 482 301 C 1 HETATM 8 O O9 482 . . . H 3 11.291 25.243 -66.544 1 62.68 ? O9 482 301 C 1 HETATM 9 N N7 482 . . . H 3 10.674 27.423 -66.857 1 78.01 ? N7 482 301 C 1 HETATM 10 C C1 482 . . . H 3 10.107 27.148 -68.1 1 75.15 ? C1 482 301 C 1 HETATM 11 C C5 482 . . . H 3 9.153 28.246 -68.477 1 70.86 ? C5 482 301 C 1 HETATM 12 C C4 482 . . . H 3 9.295 28.395 -69.956 1 73.76 ? C4 482 301 C 1 HETATM 13 C C2 482 . . . H 3 11.125 27.248 -69.14 1 76.16 ? C2 482 301 C 1 HETATM 14 O O6 482 . . . H 3 12.242 26.772 -69.085 1 80.54 ? O6 482 301 C 1 HETATM 15 O OAP 482 . . . H 3 10.568 28.027 -70.269 1 73.56 ? OAP 482 301 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #