data_4Y15 # _model_server_result.job_id Ctpw7WIB4qYe7RGxMk8PFw _model_server_result.datetime_utc '2024-12-13 14:59:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4Y15 # _exptl.entry_id 4Y15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.23 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y15 _cell.length_a 88.62 _cell.length_b 92.694 _cell.length_c 119.698 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H,I,K 1 1 B,F,G,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -88.62 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C10 H15 N O4' _chem_comp.formula_weight 213.23 _chem_comp.id 482 _chem_comp.mon_nstd_flag . _chem_comp.name 3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C11 482 doub 1 n n O9 C8 482 doub 2 n n C10 C8 482 sing 3 n n C10 C11 482 sing 4 n n C8 N7 482 sing 5 n n C11 C13 482 sing 6 n n N7 C1 482 sing 7 n n C1 C5 482 sing 8 n n C1 C2 482 sing 9 n n C5 C4 482 sing 10 n n C15 C14 482 sing 11 n n C13 C14 482 sing 12 n n C2 O6 482 doub 13 n n C2 OAP 482 sing 14 n n C4 OAP 482 sing 15 n n C15 H1 482 sing 16 n n C15 H2 482 sing 17 n n C15 H3 482 sing 18 n n C14 H4 482 sing 19 n n C14 H5 482 sing 20 n n C13 H6 482 sing 21 n n C13 H7 482 sing 22 n n C10 H8 482 sing 23 n n C10 H9 482 sing 24 n n N7 H10 482 sing 25 n n C1 H11 482 sing 26 n n C5 H12 482 sing 27 n n C5 H13 482 sing 28 n n C4 H14 482 sing 29 n n C4 H15 482 sing 30 n n # _atom_sites.entry_id 4Y15 _atom_sites.fract_transf_matrix[1][1] 0.011284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 301 301 SO4 SO4 . E 3 482 A 1 302 401 482 OHN . F 2 SO4 B 1 301 301 SO4 SO4 . G 3 482 B 1 302 401 482 OHN . H 3 482 C 1 301 301 482 OHN . I 4 HOH A 1 501 501 HOH HOH . J 4 HOH B 1 501 501 HOH HOH . J 4 HOH B 2 502 502 HOH HOH . J 4 HOH B 3 503 503 HOH HOH . K 4 HOH C 1 401 401 HOH HOH . K 4 HOH C 2 402 402 HOH HOH . K 4 HOH C 3 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 482 . . . E 3 -5.647 21.589 -27.407 1 38.38 ? C15 482 302 A 1 HETATM 2 C C14 482 . . . E 3 -4.71 20.629 -26.706 1 53.19 ? C14 482 302 A 1 HETATM 3 C C13 482 . . . E 3 -3.332 20.675 -27.335 1 54.13 ? C13 482 302 A 1 HETATM 4 C C11 482 . . . E 3 -3.365 20.121 -28.745 1 55.15 ? C11 482 302 A 1 HETATM 5 O O12 482 . . . E 3 -3.926 20.738 -29.63 1 56.97 ? O12 482 302 A 1 HETATM 6 C C10 482 . . . E 3 -2.694 18.803 -29.067 1 56.79 ? C10 482 302 A 1 HETATM 7 C C8 482 . . . E 3 -3.676 17.67 -28.867 1 48.4 ? C8 482 302 A 1 HETATM 8 O O9 482 . . . E 3 -4.66 17.583 -29.577 1 39.16 ? O9 482 302 A 1 HETATM 9 N N7 482 . . . E 3 -3.45 16.708 -27.85 1 51.82 ? N7 482 302 A 1 HETATM 10 C C1 482 . . . E 3 -4.364 15.668 -27.674 1 59.19 ? C1 482 302 A 1 HETATM 11 C C5 482 . . . E 3 -3.633 14.356 -27.555 1 62.27 ? C5 482 302 A 1 HETATM 12 C C4 482 . . . E 3 -3.948 13.797 -26.206 1 62.95 ? C4 482 302 A 1 HETATM 13 C C2 482 . . . E 3 -5.015 15.808 -26.377 1 55.83 ? C2 482 302 A 1 HETATM 14 O O6 482 . . . E 3 -5.901 16.592 -26.107 1 52.19 ? O6 482 302 A 1 HETATM 15 O OAP 482 . . . E 3 -4.405 14.831 -25.451 1 59.45 ? OAP 482 302 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #