data_4Y17 # _model_server_result.job_id ShEKqtbVkQyasaz3XUcdKA _model_server_result.datetime_utc '2024-11-28 00:50:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4Y17 # _exptl.entry_id 4Y17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y17 _cell.length_a 88.486 _cell.length_b 92.43 _cell.length_c 118.995 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F,G,I 1 1 B,E,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -88.486 92.43 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C12 H19 N O4' _chem_comp.formula_weight 241.284 _chem_comp.id LAE _chem_comp.mon_nstd_flag . _chem_comp.name '3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-(3-OXO-OCTANAL-1-YL)-HOMOSERINE LACTONE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LAE sing 173 n n C1 C5 LAE sing 174 n n C1 N11 LAE sing 175 n n C1 H11 LAE sing 176 n n C2 O3 LAE sing 177 n n C2 O10 LAE doub 178 n n O3 C4 LAE sing 179 n n C4 C5 LAE sing 180 n n C4 H41 LAE sing 181 n n C4 H42 LAE sing 182 n n C5 H51 LAE sing 183 n n C5 H52 LAE sing 184 n n N11 C13 LAE sing 185 n n N11 H111 LAE sing 186 n n C13 C14 LAE sing 187 n n C13 O35 LAE doub 188 n n C14 C15 LAE sing 189 n n C14 H141 LAE sing 190 n n C14 H142 LAE sing 191 n n C15 C18 LAE sing 192 n n C15 O36 LAE doub 193 n n C18 C19 LAE sing 194 n n C18 H181 LAE sing 195 n n C18 H182 LAE sing 196 n n C19 C22 LAE sing 197 n n C19 H191 LAE sing 198 n n C19 H192 LAE sing 199 n n C22 C25 LAE sing 200 n n C22 H221 LAE sing 201 n n C22 H222 LAE sing 202 n n C25 C28 LAE sing 203 n n C25 H251 LAE sing 204 n n C25 H252 LAE sing 205 n n C28 H281 LAE sing 206 n n C28 H282 LAE sing 207 n n C28 H283 LAE sing 208 n n # _atom_sites.entry_id 4Y17 _atom_sites.fract_transf_matrix[1][1] 0.011301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LAE A 1 301 301 LAE OHN . E 2 LAE B 1 301 301 LAE OHN . F 2 LAE C 1 301 301 LAE OHN . G 3 HOH A 1 401 404 HOH HOH . G 3 HOH A 2 402 403 HOH HOH . G 3 HOH A 3 403 401 HOH HOH . G 3 HOH A 4 404 402 HOH HOH . H 3 HOH B 1 401 401 HOH HOH . H 3 HOH B 2 402 402 HOH HOH . H 3 HOH B 3 403 403 HOH HOH . I 3 HOH C 1 401 401 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LAE . . . D 2 -4.207 30.699 -31.946 1 62.44 ? C1 LAE 301 A 1 HETATM 2 C C2 LAE . . . D 2 -5.001 30.363 -33.124 1 58.63 ? C2 LAE 301 A 1 HETATM 3 O O3 LAE . . . D 2 -4.531 31.202 -34.245 1 61.18 ? O3 LAE 301 A 1 HETATM 4 C C4 LAE . . . D 2 -4.027 32.343 -33.705 1 60.15 ? C4 LAE 301 A 1 HETATM 5 C C5 LAE . . . D 2 -3.543 31.995 -32.334 1 65.44 ? C5 LAE 301 A 1 HETATM 6 O O10 LAE . . . D 2 -5.887 29.533 -33.173 1 48.55 ? O10 LAE 301 A 1 HETATM 7 N N11 LAE . . . D 2 -3.252 29.699 -31.754 1 52.61 ? N11 LAE 301 A 1 HETATM 8 C C13 LAE . . . D 2 -3.586 28.594 -30.932 1 52.51 ? C13 LAE 301 A 1 HETATM 9 C C14 LAE . . . D 2 -2.585 27.48 -30.704 1 58.57 ? C14 LAE 301 A 1 HETATM 10 C C15 LAE . . . D 2 -3.277 26.303 -30.048 1 52.05 ? C15 LAE 301 A 1 HETATM 11 C C18 LAE . . . D 2 -3.686 25.101 -30.871 1 55.23 ? C18 LAE 301 A 1 HETATM 12 C C19 LAE . . . D 2 -3.631 25.438 -32.344 1 59.4 ? C19 LAE 301 A 1 HETATM 13 C C22 LAE . . . D 2 -4.321 24.342 -33.127 1 49 ? C22 LAE 301 A 1 HETATM 14 C C25 LAE . . . D 2 -5.808 24.616 -33.163 1 55.49 ? C25 LAE 301 A 1 HETATM 15 C C28 LAE . . . D 2 -6.203 25.047 -34.56 1 59.16 ? C28 LAE 301 A 1 HETATM 16 O O35 LAE . . . D 2 -4.684 28.548 -30.412 1 51.1 ? O35 LAE 301 A 1 HETATM 17 O O36 LAE . . . D 2 -3.507 26.318 -28.855 1 48.32 ? O36 LAE 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #