data_4Y1C # _model_server_result.job_id SrFPLK_28TYVSlfN-9Z_Wg _model_server_result.datetime_utc '2024-11-12 20:35:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 4Y1C # _exptl.entry_id 4Y1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y1C _cell.length_a 60.48 _cell.length_b 61.5 _cell.length_c 81.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LYS 1 C LYS 1 1_555 C N DIL 2 C DIL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? covale ? covale2 C C DIL 2 C DIL 2 1_555 C N ASP 3 C ASP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale3 C C ASN 4 C ASN 4 1_555 C N 45F 5 C 45F 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? covale ? covale4 C C 45F 5 C 45F 5 1_555 C N PRO 6 C PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? metalc ? metalc1 A SG CYS 20 A CYS 65 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc2 A SG CYS 20 A CYS 65 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 A NE2 HIS 22 A HIS 67 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A OE1 GLU 47 A GLU 92 1_555 D CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc5 A OE2 GLU 47 A GLU 92 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc6 A OD2 ASP 71 A ASP 116 1_555 E CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc7 D CD CD . A CD 301 4_455 B O ASP 86 B ASP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc8 E CD CD . A CD 302 4_455 B OD2 ASP 86 B ASP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc9 B SG CYS 20 B CYS 65 1_555 H CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc10 B NE2 HIS 22 B HIS 67 1_555 H CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc11 B OE2 GLU 47 B GLU 92 1_555 G CD CD . B CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc12 B OE1 GLU 47 B GLU 92 1_555 H CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc13 B OD2 ASP 71 B ASP 116 1_555 G CD CD . B CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 334 n n S O2 SO4 doub 335 n n S O3 SO4 sing 336 n n S O4 SO4 sing 337 n n # _atom_sites.entry_id 4Y1C _atom_sites.fract_transf_matrix[1][1] 0.016534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CD A 1 301 1003 CD CD . E 3 CD A 1 302 1004 CD CD . F 4 SO4 A 1 303 1 SO4 SO4 . G 3 CD B 1 1001 1001 CD CD . H 3 CD B 1 1002 1002 CD CD . I 4 SO4 B 1 1003 2 SO4 SO4 . J 5 HOH A 1 401 10 HOH HOH . J 5 HOH A 2 402 9 HOH HOH . J 5 HOH A 3 403 3 HOH HOH . J 5 HOH A 4 404 5 HOH HOH . J 5 HOH A 5 405 6 HOH HOH . J 5 HOH A 6 406 7 HOH HOH . J 5 HOH A 7 407 13 HOH HOH . J 5 HOH A 8 408 16 HOH HOH . J 5 HOH A 9 409 20 HOH HOH . J 5 HOH A 10 410 23 HOH HOH . J 5 HOH A 11 411 25 HOH HOH . K 5 HOH B 1 1101 14 HOH HOH . K 5 HOH B 2 1102 18 HOH HOH . K 5 HOH B 3 1103 21 HOH HOH . K 5 HOH B 4 1104 17 HOH HOH . K 5 HOH B 5 1105 1 HOH HOH . K 5 HOH B 6 1106 2 HOH HOH . K 5 HOH B 7 1107 4 HOH HOH . K 5 HOH B 8 1108 8 HOH HOH . K 5 HOH B 9 1109 11 HOH HOH . K 5 HOH B 10 1110 12 HOH HOH . K 5 HOH B 11 1111 15 HOH HOH . K 5 HOH B 12 1112 19 HOH HOH . K 5 HOH B 13 1113 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 4 26.292 14.735 -9.701 1 40.02 ? S SO4 303 A 1 HETATM 2 O O1 SO4 . . . F 4 27.419 13.773 -9.757 1 50.68 ? O1 SO4 303 A 1 HETATM 3 O O2 SO4 . . . F 4 25.705 14.742 -11.068 1 44.64 ? O2 SO4 303 A 1 HETATM 4 O O3 SO4 . . . F 4 26.713 16.104 -9.262 1 40.94 ? O3 SO4 303 A 1 HETATM 5 O O4 SO4 . . . F 4 25.328 14.181 -8.739 1 42.82 ? O4 SO4 303 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #