data_4Y1K # _model_server_result.job_id 9ZN6fRjHbNKl9ce-WrmPdg _model_server_result.datetime_utc '2024-11-24 08:25:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1001}' # _entry.id 4Y1K # _exptl.entry_id 4Y1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.94 _cell.angle_gamma 90 _cell.entry_id 4Y1K _cell.length_a 152.642 _cell.length_b 87.858 _cell.length_c 355.942 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I 1 1 D,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1 A CYS 1 1_555 G C1 PLM . A PLM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.723 ? covale ? covale2 B SG CYS 1 B CYS 1 1_555 H C1 PLM . B PLM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? covale ? covale3 C SG CYS 1 C CYS 1 1_555 I C1 PLM . C PLM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.709 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 258 n n C1 O2 PLM doub 259 n n C1 C2 PLM sing 260 n n O1 H PLM sing 261 n n C2 C3 PLM sing 262 n n C2 H21 PLM sing 263 n n C2 H22 PLM sing 264 n n C3 C4 PLM sing 265 n n C3 H31 PLM sing 266 n n C3 H32 PLM sing 267 n n C4 C5 PLM sing 268 n n C4 H41 PLM sing 269 n n C4 H42 PLM sing 270 n n C5 C6 PLM sing 271 n n C5 H51 PLM sing 272 n n C5 H52 PLM sing 273 n n C6 C7 PLM sing 274 n n C6 H61 PLM sing 275 n n C6 H62 PLM sing 276 n n C7 C8 PLM sing 277 n n C7 H71 PLM sing 278 n n C7 H72 PLM sing 279 n n C8 C9 PLM sing 280 n n C8 H81 PLM sing 281 n n C8 H82 PLM sing 282 n n C9 CA PLM sing 283 n n C9 H91 PLM sing 284 n n C9 H92 PLM sing 285 n n CA CB PLM sing 286 n n CA HA1 PLM sing 287 n n CA HA2 PLM sing 288 n n CB CC PLM sing 289 n n CB HB1 PLM sing 290 n n CB HB2 PLM sing 291 n n CC CD PLM sing 292 n n CC HC1 PLM sing 293 n n CC HC2 PLM sing 294 n n CD CE PLM sing 295 n n CD HD1 PLM sing 296 n n CD HD2 PLM sing 297 n n CE CF PLM sing 298 n n CE HE1 PLM sing 299 n n CE HE2 PLM sing 300 n n CF CG PLM sing 301 n n CF HF1 PLM sing 302 n n CF HF2 PLM sing 303 n n CG HG1 PLM sing 304 n n CG HG2 PLM sing 305 n n CG HG3 PLM sing 306 n n # _atom_sites.entry_id 4Y1K _atom_sites.fract_transf_matrix[1][1] 0.006551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00103 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PLM A 1 1001 1001 PLM PLM . H 2 PLM B 1 1001 1001 PLM PLM . I 2 PLM C 1 1001 1001 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . G 2 1.008 -6.606 8.717 1 76.11 ? C1 PLM 1001 A 1 HETATM 2 O O2 PLM . . . G 2 0.954 -5.739 7.913 1 76.11 ? O2 PLM 1001 A 1 HETATM 3 C C2 PLM . . . G 2 1.425 -7.902 8.106 1 76.11 ? C2 PLM 1001 A 1 HETATM 4 C C3 PLM . . . G 2 1.842 -8.074 6.459 1 72.92 ? C3 PLM 1001 A 1 HETATM 5 C C4 PLM . . . G 2 3.047 -7.534 5.922 1 72.92 ? C4 PLM 1001 A 1 HETATM 6 C C5 PLM . . . G 2 3.905 -8.448 5.352 1 72.92 ? C5 PLM 1001 A 1 HETATM 7 C C6 PLM . . . G 2 3.876 -8.693 3.791 1 72.92 ? C6 PLM 1001 A 1 HETATM 8 C C7 PLM . . . G 2 2.475 -8.481 2.985 1 72.92 ? C7 PLM 1001 A 1 HETATM 9 C C8 PLM . . . G 2 1.444 -9.488 3.204 1 72.92 ? C8 PLM 1001 A 1 HETATM 10 C C9 PLM . . . G 2 0.062 -8.965 3.156 1 72.92 ? C9 PLM 1001 A 1 HETATM 11 C CA PLM . . . G 2 -0.386 -8.271 1.839 1 72.92 ? CA PLM 1001 A 1 HETATM 12 C CB PLM . . . G 2 -1.87 -8.11 1.659 1 72.92 ? CB PLM 1001 A 1 HETATM 13 C CC PLM . . . G 2 -2.457 -8.474 0.346 1 72.92 ? CC PLM 1001 A 1 HETATM 14 C CD PLM . . . G 2 -3.354 -9.675 0.254 1 72.92 ? CD PLM 1001 A 1 HETATM 15 C CE PLM . . . G 2 -4.699 -9.62 0.897 1 72.92 ? CE PLM 1001 A 1 HETATM 16 C CF PLM . . . G 2 -5.857 -10.054 0.06 1 72.92 ? CF PLM 1001 A 1 HETATM 17 C CG PLM . . . G 2 -7.105 -10.496 0.776 1 72.92 ? CG PLM 1001 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 17 #