data_4Y1Q
#
_model_server_result.job_id            oMsUsCwklfFFfwSWEQy4xg 
_model_server_result.datetime_utc      '2025-03-04 07:55:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y1q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":301}' 
#
_entry.id    4Y1Q 
#
_exptl.entry_id    4Y1Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.35 
_cell.angle_beta          89.75 
_cell.angle_gamma         90.46 
_cell.entry_id            4Y1Q 
_cell.length_a            69.66 
_cell.length_b            70.32 
_cell.length_c            77.03 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y1Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I 1 1 
B,J 2 1 
C,K 3 1 
D,L 4 1 
E,M 5 1 
F,N 6 1 
G,O 7 1 
H,P 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     4Y1Q 
_atom_sites.fract_transf_matrix[1][1]    0.014355 
_atom_sites.fract_transf_matrix[1][2]    0.000115 
_atom_sites.fract_transf_matrix[1][3]    -0.000064 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014221 
_atom_sites.fract_transf_matrix[2][3]    -0.000162 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012983 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 HEM A 1 301 200 HEM HEM . 
J 2 HEM B 1 301 200 HEM HEM . 
K 2 HEM D 1 301 200 HEM HEM . 
L 2 HEM G 1 301 200 HEM HEM . 
M 2 HEM I 1 301 200 HEM HEM . 
N 2 HEM K 1 301 200 HEM HEM . 
O 2 HEM M 1 301 200 HEM HEM . 
P 2 HEM O 1 301 200 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . N 2 -27.143 4.978 -24.244 1 60.69 ? CHA HEM 301 K 1 
HETATM 2 C CHB HEM . . . N 2 -29.583 6.046 -20.187 1 57.2 ? CHB HEM 301 K 1 
HETATM 3 C CHC HEM . . . N 2 -31.604 1.631 -20.227 1 57.05 ? CHC HEM 301 K 1 
HETATM 4 C CHD HEM . . . N 2 -29.068 0.488 -24.201 1 53.92 ? CHD HEM 301 K 1 
HETATM 5 C C1A HEM . . . N 2 -27.616 5.649 -23.14 1 64.95 ? C1A HEM 301 K 1 
HETATM 6 C C2A HEM . . . N 2 -27.249 6.994 -22.744 1 65.4 ? C2A HEM 301 K 1 
HETATM 7 C C3A HEM . . . N 2 -27.92 7.291 -21.626 1 68.26 ? C3A HEM 301 K 1 
HETATM 8 C C4A HEM . . . N 2 -28.74 6.147 -21.274 1 65.18 ? C4A HEM 301 K 1 
HETATM 9 C CMA HEM . . . N 2 -27.841 8.619 -20.843 1 60.65 ? CMA HEM 301 K 1 
HETATM 10 C CAA HEM . . . N 2 -26.249 7.908 -23.489 1 69.42 ? CAA HEM 301 K 1 
HETATM 11 C CBA HEM . . . N 2 -26.988 8.83 -24.454 1 65.22 ? CBA HEM 301 K 1 
HETATM 12 C CGA HEM . . . N 2 -27.339 8.101 -25.726 1 63.43 ? CGA HEM 301 K 1 
HETATM 13 O O1A HEM . . . N 2 -26.543 7.236 -26.175 1 64.08 ? O1A HEM 301 K 1 
HETATM 14 O O2A HEM . . . N 2 -28.417 8.4 -26.3 1 61.99 ? O2A HEM 301 K 1 
HETATM 15 C C1B HEM . . . N 2 -30.392 4.97 -19.884 1 60.12 ? C1B HEM 301 K 1 
HETATM 16 C C2B HEM . . . N 2 -31.428 4.948 -18.871 1 59.48 ? C2B HEM 301 K 1 
HETATM 17 C C3B HEM . . . N 2 -31.995 3.726 -18.88 1 53.61 ? C3B HEM 301 K 1 
HETATM 18 C C4B HEM . . . N 2 -31.323 2.942 -19.9 1 56.75 ? C4B HEM 301 K 1 
HETATM 19 C CMB HEM . . . N 2 -31.764 6.169 -17.981 1 50.59 ? CMB HEM 301 K 1 
HETATM 20 C CAB HEM . . . N 2 -33.143 3.149 -18.008 1 46.19 ? CAB HEM 301 K 1 
HETATM 21 C CBB HEM . . . N 2 -33.739 3.797 -17 1 45.52 ? CBB HEM 301 K 1 
HETATM 22 C C1C HEM . . . N 2 -31.127 0.949 -21.327 1 58.84 ? C1C HEM 301 K 1 
HETATM 23 C C2C HEM . . . N 2 -31.566 -0.357 -21.782 1 51.28 ? C2C HEM 301 K 1 
HETATM 24 C C3C HEM . . . N 2 -30.854 -0.675 -22.879 1 54.38 ? C3C HEM 301 K 1 
HETATM 25 C C4C HEM . . . N 2 -29.959 0.429 -23.153 1 55.18 ? C4C HEM 301 K 1 
HETATM 26 C CMC HEM . . . N 2 -32.654 -1.189 -21.066 1 33.19 ? CMC HEM 301 K 1 
HETATM 27 C CAC HEM . . . N 2 -30.909 -1.935 -23.783 1 46.21 ? CAC HEM 301 K 1 
HETATM 28 C CBC HEM . . . N 2 -31.871 -2.864 -23.739 1 38.8 ? CBC HEM 301 K 1 
HETATM 29 C C1D HEM . . . N 2 -28.218 1.528 -24.505 1 58.2 ? C1D HEM 301 K 1 
HETATM 30 C C2D HEM . . . N 2 -27.071 1.43 -25.375 1 58.26 ? C2D HEM 301 K 1 
HETATM 31 C C3D HEM . . . N 2 -26.439 2.828 -25.405 1 65.67 ? C3D HEM 301 K 1 
HETATM 32 C C4D HEM . . . N 2 -27.289 3.638 -24.541 1 63.75 ? C4D HEM 301 K 1 
HETATM 33 C CMD HEM . . . N 2 -26.574 0.171 -26.12 1 40.92 ? CMD HEM 301 K 1 
HETATM 34 C CAD HEM . . . N 2 -25.173 3.181 -26.232 1 55.71 ? CAD HEM 301 K 1 
HETATM 35 C CBD HEM . . . N 2 -24.381 4.389 -25.735 1 59.65 ? CBD HEM 301 K 1 
HETATM 36 C CGD HEM . . . N 2 -22.97 3.975 -25.41 1 82.51 ? CGD HEM 301 K 1 
HETATM 37 O O1D HEM . . . N 2 -22.749 2.767 -25.136 1 85 ? O1D HEM 301 K 1 
HETATM 38 O O2D HEM . . . N 2 -22.07 4.854 -25.414 1 53.91 ? O2D HEM 301 K 1 
HETATM 39 N NA HEM . . . N 2 -28.527 5.165 -22.223 1 69.35 ? NA HEM 301 K 1 
HETATM 40 N NB HEM . . . N 2 -30.354 3.73 -20.492 1 62.29 ? NB HEM 301 K 1 
HETATM 41 N NC HEM . . . N 2 -30.147 1.398 -22.189 1 60.44 ? NC HEM 301 K 1 
HETATM 42 N ND HEM . . . N 2 -28.312 2.835 -24.036 1 66.3 ? ND HEM 301 K 1 
HETATM 43 FE FE HEM . . . N 2 -29.326 3.276 -22.244 1 90.91 ? FE HEM 301 K 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#