data_4Y24 # _model_server_result.job_id WmYcmw8xFKwmWZHwGrc2UA _model_server_result.datetime_utc '2025-01-10 23:48:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4Y24 # _exptl.entry_id 4Y24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 648.635 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y24 _cell.length_a 43.578 _cell.length_b 58.242 _cell.length_c 110.976 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H30 F2 N6 O8 S' _chem_comp.formula_weight 648.635 _chem_comp.id TD2 _chem_comp.mon_nstd_flag . _chem_comp.name '3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O61 C61 TD2 sing 290 n n C61 C51 TD2 sing 291 n n C51 O51 TD2 sing 292 n n C51 C41 TD2 sing 293 n n O51 C11 TD2 sing 294 n n O6 C6 TD2 sing 295 n n C5 C6 TD2 sing 296 n n C5 O5 TD2 sing 297 n n C5 C4 TD2 sing 298 n n C41 O41 TD2 sing 299 n n C41 C31 TD2 sing 300 n n O5 C1 TD2 sing 301 n n C4 C3 TD2 sing 302 n n C4 O4 TD2 sing 303 n n C1 C2 TD2 sing 304 n n C1 S1 TD2 sing 305 n n C3 C2 TD2 sing 306 n n C3 N71 TD2 sing 307 n n N8 N71 TD2 sing 308 n y N8 N9 TD2 doub 309 n y C11 S1 TD2 sing 310 n n C11 C21 TD2 sing 311 n n O21 C2 TD2 sing 312 n n C31 C21 TD2 sing 313 n n C31 N7 TD2 sing 314 n n N71 C71 TD2 sing 315 n y N9 C10 TD2 sing 316 n y C21 O2 TD2 sing 317 n n N11 N7 TD2 sing 318 n y N11 N10 TD2 doub 319 n y N7 C8 TD2 sing 320 n y C71 C10 TD2 doub 321 n y N10 C9 TD2 sing 322 n y C10 C22 TD2 sing 323 n n C8 C9 TD2 doub 324 n y C9 C12 TD2 sing 325 n n C23 C22 TD2 doub 326 n y C23 C24 TD2 sing 327 n y C22 C27 TD2 sing 328 n y C24 C25 TD2 doub 329 n y C12 C13 TD2 doub 330 n y C12 C17 TD2 sing 331 n y C27 C26 TD2 doub 332 n y C13 C14 TD2 sing 333 n y C17 C16 TD2 doub 334 n y C25 C26 TD2 sing 335 n y C26 F28 TD2 sing 336 n n C14 F18 TD2 sing 337 n n C14 C15 TD2 doub 338 n y C16 C15 TD2 sing 339 n y C1 H1 TD2 sing 340 n n C2 H2 TD2 sing 341 n n C3 H3 TD2 sing 342 n n C4 H4 TD2 sing 343 n n C5 H5 TD2 sing 344 n n C6 H6 TD2 sing 345 n n C6 H7 TD2 sing 346 n n C13 H8 TD2 sing 347 n n C11 H9 TD2 sing 348 n n C51 H10 TD2 sing 349 n n C61 H11 TD2 sing 350 n n C61 H12 TD2 sing 351 n n O6 H13 TD2 sing 352 n n O61 H14 TD2 sing 353 n n C41 H15 TD2 sing 354 n n O4 H16 TD2 sing 355 n n O41 H17 TD2 sing 356 n n C31 H18 TD2 sing 357 n n C21 H19 TD2 sing 358 n n O2 H20 TD2 sing 359 n n O21 H21 TD2 sing 360 n n C8 H22 TD2 sing 361 n n C71 H23 TD2 sing 362 n n C15 H24 TD2 sing 363 n n C16 H25 TD2 sing 364 n n C17 H26 TD2 sing 365 n n C23 H27 TD2 sing 366 n n C24 H28 TD2 sing 367 n n C25 H29 TD2 sing 368 n n C27 H30 TD2 sing 369 n n # _atom_sites.entry_id 4Y24 _atom_sites.fract_transf_matrix[1][1] 0.022947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TD2 A 1 201 1 TD2 TD1 . D 2 TD2 B 1 201 1 TD2 TD1 . E 3 HOH A 1 301 42 HOH HOH . E 3 HOH A 2 302 11 HOH HOH . E 3 HOH A 3 303 48 HOH HOH . E 3 HOH A 4 304 101 HOH HOH . E 3 HOH A 5 305 47 HOH HOH . E 3 HOH A 6 306 39 HOH HOH . E 3 HOH A 7 307 43 HOH HOH . E 3 HOH A 8 308 88 HOH HOH . E 3 HOH A 9 309 97 HOH HOH . E 3 HOH A 10 310 78 HOH HOH . E 3 HOH A 11 311 63 HOH HOH . E 3 HOH A 12 312 15 HOH HOH . E 3 HOH A 13 313 3 HOH HOH . E 3 HOH A 14 314 7 HOH HOH . E 3 HOH A 15 315 14 HOH HOH . E 3 HOH A 16 316 22 HOH HOH . E 3 HOH A 17 317 27 HOH HOH . E 3 HOH A 18 318 29 HOH HOH . E 3 HOH A 19 319 30 HOH HOH . E 3 HOH A 20 320 31 HOH HOH . E 3 HOH A 21 321 35 HOH HOH . E 3 HOH A 22 322 37 HOH HOH . E 3 HOH A 23 323 38 HOH HOH . E 3 HOH A 24 324 41 HOH HOH . E 3 HOH A 25 325 44 HOH HOH . E 3 HOH A 26 326 51 HOH HOH . E 3 HOH A 27 327 53 HOH HOH . E 3 HOH A 28 328 57 HOH HOH . E 3 HOH A 29 329 59 HOH HOH . E 3 HOH A 30 330 65 HOH HOH . E 3 HOH A 31 331 67 HOH HOH . E 3 HOH A 32 332 69 HOH HOH . E 3 HOH A 33 333 75 HOH HOH . E 3 HOH A 34 334 81 HOH HOH . E 3 HOH A 35 335 86 HOH HOH . E 3 HOH A 36 336 90 HOH HOH . E 3 HOH A 37 337 94 HOH HOH . E 3 HOH A 38 338 95 HOH HOH . E 3 HOH A 39 339 96 HOH HOH . E 3 HOH A 40 340 98 HOH HOH . E 3 HOH A 41 341 99 HOH HOH . E 3 HOH A 42 342 100 HOH HOH . E 3 HOH A 43 343 102 HOH HOH . F 3 HOH B 1 301 17 HOH HOH . F 3 HOH B 2 302 24 HOH HOH . F 3 HOH B 3 303 21 HOH HOH . F 3 HOH B 4 304 18 HOH HOH . F 3 HOH B 5 305 32 HOH HOH . F 3 HOH B 6 306 82 HOH HOH . F 3 HOH B 7 307 92 HOH HOH . F 3 HOH B 8 308 10 HOH HOH . F 3 HOH B 9 309 36 HOH HOH . F 3 HOH B 10 310 8 HOH HOH . F 3 HOH B 11 311 58 HOH HOH . F 3 HOH B 12 312 66 HOH HOH . F 3 HOH B 13 313 6 HOH HOH . F 3 HOH B 14 314 46 HOH HOH . F 3 HOH B 15 315 77 HOH HOH . F 3 HOH B 16 316 49 HOH HOH . F 3 HOH B 17 317 72 HOH HOH . F 3 HOH B 18 318 76 HOH HOH . F 3 HOH B 19 319 62 HOH HOH . F 3 HOH B 20 320 84 HOH HOH . F 3 HOH B 21 321 54 HOH HOH . F 3 HOH B 22 322 74 HOH HOH . F 3 HOH B 23 323 1 HOH HOH . F 3 HOH B 24 324 2 HOH HOH . F 3 HOH B 25 325 4 HOH HOH . F 3 HOH B 26 326 5 HOH HOH . F 3 HOH B 27 327 9 HOH HOH . F 3 HOH B 28 328 12 HOH HOH . F 3 HOH B 29 329 13 HOH HOH . F 3 HOH B 30 330 16 HOH HOH . F 3 HOH B 31 331 19 HOH HOH . F 3 HOH B 32 332 20 HOH HOH . F 3 HOH B 33 333 23 HOH HOH . F 3 HOH B 34 334 25 HOH HOH . F 3 HOH B 35 335 26 HOH HOH . F 3 HOH B 36 336 28 HOH HOH . F 3 HOH B 37 337 33 HOH HOH . F 3 HOH B 38 338 34 HOH HOH . F 3 HOH B 39 339 40 HOH HOH . F 3 HOH B 40 340 45 HOH HOH . F 3 HOH B 41 341 50 HOH HOH . F 3 HOH B 42 342 52 HOH HOH . F 3 HOH B 43 343 55 HOH HOH . F 3 HOH B 44 344 56 HOH HOH . F 3 HOH B 45 345 60 HOH HOH . F 3 HOH B 46 346 61 HOH HOH . F 3 HOH B 47 347 64 HOH HOH . F 3 HOH B 48 348 70 HOH HOH . F 3 HOH B 49 349 73 HOH HOH . F 3 HOH B 50 350 83 HOH HOH . F 3 HOH B 51 351 85 HOH HOH . F 3 HOH B 52 352 89 HOH HOH . F 3 HOH B 53 353 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TD2 . . . C 2 23.141 -0.734 -17.728 1 41.78 ? C1 TD2 201 A 1 HETATM 2 C C2 TD2 . . . C 2 23.448 -2.081 -17.117 1 39.52 ? C2 TD2 201 A 1 HETATM 3 C C3 TD2 . . . C 2 22.612 -3.174 -17.669 1 39.13 ? C3 TD2 201 A 1 HETATM 4 C C4 TD2 . . . C 2 21.197 -2.903 -17.747 1 34.4 ? C4 TD2 201 A 1 HETATM 5 C C5 TD2 . . . C 2 20.932 -1.57 -18.371 1 36.06 ? C5 TD2 201 A 1 HETATM 6 C C6 TD2 . . . C 2 19.511 -1.278 -18.244 1 34.45 ? C6 TD2 201 A 1 HETATM 7 N N9 TD2 . . . C 2 23.246 -6.484 -16.828 1 46.8 ? N9 TD2 201 A 1 HETATM 8 C C12 TD2 . . . C 2 22.511 7.82 -13.379 1 55.47 ? C12 TD2 201 A 1 HETATM 9 C C13 TD2 . . . C 2 21.404 8.388 -12.832 1 58.29 ? C13 TD2 201 A 1 HETATM 10 C C14 TD2 . . . C 2 21.494 9.129 -11.619 1 60.04 ? C14 TD2 201 A 1 HETATM 11 C C11 TD2 . . . C 2 23.3 2.083 -17.606 1 41.72 ? C11 TD2 201 A 1 HETATM 12 S S1 TD2 . . . C 2 23.938 0.604 -16.933 1 36.43 ? S1 TD2 201 A 1 HETATM 13 O O5 TD2 . . . C 2 21.715 -0.508 -17.761 1 42.27 ? O5 TD2 201 A 1 HETATM 14 O O51 TD2 . . . C 2 24.288 2.507 -18.602 1 45.08 ? O51 TD2 201 A 1 HETATM 15 C C51 TD2 . . . C 2 23.961 3.745 -19.253 1 47.1 ? C51 TD2 201 A 1 HETATM 16 C C61 TD2 . . . C 2 25.044 3.998 -20.228 1 47.32 ? C61 TD2 201 A 1 HETATM 17 O O6 TD2 . . . C 2 19.195 -0.005 -18.566 1 32.77 ? O6 TD2 201 A 1 HETATM 18 O O61 TD2 . . . C 2 24.688 3.388 -21.419 1 46.45 ? O61 TD2 201 A 1 HETATM 19 C C41 TD2 . . . C 2 23.79 4.879 -18.299 1 45.91 ? C41 TD2 201 A 1 HETATM 20 O O4 TD2 . . . C 2 20.731 -2.933 -16.447 1 30.59 ? O4 TD2 201 A 1 HETATM 21 O O41 TD2 . . . C 2 25.039 5.211 -17.694 1 46.85 ? O41 TD2 201 A 1 HETATM 22 C C31 TD2 . . . C 2 22.891 4.5 -17.205 1 43.5 ? C31 TD2 201 A 1 HETATM 23 C C21 TD2 . . . C 2 22.993 3.139 -16.609 1 39.23 ? C21 TD2 201 A 1 HETATM 24 O O2 TD2 . . . C 2 21.695 2.795 -16.146 1 32.81 ? O2 TD2 201 A 1 HETATM 25 O O21 TD2 . . . C 2 24.793 -2.392 -17.244 1 33.59 ? O21 TD2 201 A 1 HETATM 26 N N7 TD2 . . . C 2 22.551 5.603 -16.289 1 45.39 ? N7 TD2 201 A 1 HETATM 27 C C8 TD2 . . . C 2 23.122 5.926 -15.094 1 47.75 ? C8 TD2 201 A 1 HETATM 28 C C9 TD2 . . . C 2 22.396 7.024 -14.65 1 50.4 ? C9 TD2 201 A 1 HETATM 29 N N10 TD2 . . . C 2 21.478 7.234 -15.58 1 49.46 ? N10 TD2 201 A 1 HETATM 30 N N11 TD2 . . . C 2 21.617 6.383 -16.512 1 46.93 ? N11 TD2 201 A 1 HETATM 31 N N71 TD2 . . . C 2 22.824 -4.423 -16.963 1 41.43 ? N71 TD2 201 A 1 HETATM 32 N N8 TD2 . . . C 2 23.085 -5.514 -17.609 1 45.6 ? N8 TD2 201 A 1 HETATM 33 C C10 TD2 . . . C 2 23.125 -6.094 -15.578 1 44.63 ? C10 TD2 201 A 1 HETATM 34 C C71 TD2 . . . C 2 22.844 -4.685 -15.681 1 41.43 ? C71 TD2 201 A 1 HETATM 35 C C15 TD2 . . . C 2 22.736 9.24 -10.976 1 63.56 ? C15 TD2 201 A 1 HETATM 36 C C16 TD2 . . . C 2 23.811 8.659 -11.53 1 62.38 ? C16 TD2 201 A 1 HETATM 37 C C17 TD2 . . . C 2 23.724 7.925 -12.746 1 58.93 ? C17 TD2 201 A 1 HETATM 38 C C22 TD2 . . . C 2 23.288 -7.042 -14.392 1 46.04 ? C22 TD2 201 A 1 HETATM 39 C C23 TD2 . . . C 2 23.917 -8.272 -14.632 1 44.36 ? C23 TD2 201 A 1 HETATM 40 C C24 TD2 . . . C 2 24.109 -9.204 -13.618 1 43.86 ? C24 TD2 201 A 1 HETATM 41 C C25 TD2 . . . C 2 23.69 -8.909 -12.369 1 44.79 ? C25 TD2 201 A 1 HETATM 42 C C26 TD2 . . . C 2 23.092 -7.709 -12.124 1 47.45 ? C26 TD2 201 A 1 HETATM 43 C C27 TD2 . . . C 2 22.903 -6.758 -13.152 1 46.98 ? C27 TD2 201 A 1 HETATM 44 F F18 TD2 . . . C 2 20.471 9.7 -11.038 1 57.4 ? F18 TD2 201 A 1 HETATM 45 F F28 TD2 . . . C 2 22.66 -7.441 -10.891 1 50.24 ? F28 TD2 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #