data_4Y24
#
_model_server_result.job_id            J5oWIiXVEF670GCXnMtwgQ 
_model_server_result.datetime_utc      '2025-01-10 23:46:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y24 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    4Y24 
#
_exptl.entry_id    4Y24 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              648.635 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Y24 
_cell.length_a            43.578 
_cell.length_b            58.242 
_cell.length_c            110.976 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y24 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C28 H30 F2 N6 O8 S' 
_chem_comp.formula_weight    648.635 
_chem_comp.id                TD2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(3-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O61 C61 TD2 sing 290 n n 
C61 C51 TD2 sing 291 n n 
C51 O51 TD2 sing 292 n n 
C51 C41 TD2 sing 293 n n 
O51 C11 TD2 sing 294 n n 
O6 C6 TD2 sing 295 n n 
C5 C6 TD2 sing 296 n n 
C5 O5 TD2 sing 297 n n 
C5 C4 TD2 sing 298 n n 
C41 O41 TD2 sing 299 n n 
C41 C31 TD2 sing 300 n n 
O5 C1 TD2 sing 301 n n 
C4 C3 TD2 sing 302 n n 
C4 O4 TD2 sing 303 n n 
C1 C2 TD2 sing 304 n n 
C1 S1 TD2 sing 305 n n 
C3 C2 TD2 sing 306 n n 
C3 N71 TD2 sing 307 n n 
N8 N71 TD2 sing 308 n y 
N8 N9 TD2 doub 309 n y 
C11 S1 TD2 sing 310 n n 
C11 C21 TD2 sing 311 n n 
O21 C2 TD2 sing 312 n n 
C31 C21 TD2 sing 313 n n 
C31 N7 TD2 sing 314 n n 
N71 C71 TD2 sing 315 n y 
N9 C10 TD2 sing 316 n y 
C21 O2 TD2 sing 317 n n 
N11 N7 TD2 sing 318 n y 
N11 N10 TD2 doub 319 n y 
N7 C8 TD2 sing 320 n y 
C71 C10 TD2 doub 321 n y 
N10 C9 TD2 sing 322 n y 
C10 C22 TD2 sing 323 n n 
C8 C9 TD2 doub 324 n y 
C9 C12 TD2 sing 325 n n 
C23 C22 TD2 doub 326 n y 
C23 C24 TD2 sing 327 n y 
C22 C27 TD2 sing 328 n y 
C24 C25 TD2 doub 329 n y 
C12 C13 TD2 doub 330 n y 
C12 C17 TD2 sing 331 n y 
C27 C26 TD2 doub 332 n y 
C13 C14 TD2 sing 333 n y 
C17 C16 TD2 doub 334 n y 
C25 C26 TD2 sing 335 n y 
C26 F28 TD2 sing 336 n n 
C14 F18 TD2 sing 337 n n 
C14 C15 TD2 doub 338 n y 
C16 C15 TD2 sing 339 n y 
C1 H1 TD2 sing 340 n n 
C2 H2 TD2 sing 341 n n 
C3 H3 TD2 sing 342 n n 
C4 H4 TD2 sing 343 n n 
C5 H5 TD2 sing 344 n n 
C6 H6 TD2 sing 345 n n 
C6 H7 TD2 sing 346 n n 
C13 H8 TD2 sing 347 n n 
C11 H9 TD2 sing 348 n n 
C51 H10 TD2 sing 349 n n 
C61 H11 TD2 sing 350 n n 
C61 H12 TD2 sing 351 n n 
O6 H13 TD2 sing 352 n n 
O61 H14 TD2 sing 353 n n 
C41 H15 TD2 sing 354 n n 
O4 H16 TD2 sing 355 n n 
O41 H17 TD2 sing 356 n n 
C31 H18 TD2 sing 357 n n 
C21 H19 TD2 sing 358 n n 
O2 H20 TD2 sing 359 n n 
O21 H21 TD2 sing 360 n n 
C8 H22 TD2 sing 361 n n 
C71 H23 TD2 sing 362 n n 
C15 H24 TD2 sing 363 n n 
C16 H25 TD2 sing 364 n n 
C17 H26 TD2 sing 365 n n 
C23 H27 TD2 sing 366 n n 
C24 H28 TD2 sing 367 n n 
C25 H29 TD2 sing 368 n n 
C27 H30 TD2 sing 369 n n 
#
_atom_sites.entry_id                     4Y24 
_atom_sites.fract_transf_matrix[1][1]    0.022947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01717 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TD2 A 1 201 1 TD2 TD1 . 
D 2 TD2 B 1 201 1 TD2 TD1 . 
E 3 HOH A 1 301 42 HOH HOH . 
E 3 HOH A 2 302 11 HOH HOH . 
E 3 HOH A 3 303 48 HOH HOH . 
E 3 HOH A 4 304 101 HOH HOH . 
E 3 HOH A 5 305 47 HOH HOH . 
E 3 HOH A 6 306 39 HOH HOH . 
E 3 HOH A 7 307 43 HOH HOH . 
E 3 HOH A 8 308 88 HOH HOH . 
E 3 HOH A 9 309 97 HOH HOH . 
E 3 HOH A 10 310 78 HOH HOH . 
E 3 HOH A 11 311 63 HOH HOH . 
E 3 HOH A 12 312 15 HOH HOH . 
E 3 HOH A 13 313 3 HOH HOH . 
E 3 HOH A 14 314 7 HOH HOH . 
E 3 HOH A 15 315 14 HOH HOH . 
E 3 HOH A 16 316 22 HOH HOH . 
E 3 HOH A 17 317 27 HOH HOH . 
E 3 HOH A 18 318 29 HOH HOH . 
E 3 HOH A 19 319 30 HOH HOH . 
E 3 HOH A 20 320 31 HOH HOH . 
E 3 HOH A 21 321 35 HOH HOH . 
E 3 HOH A 22 322 37 HOH HOH . 
E 3 HOH A 23 323 38 HOH HOH . 
E 3 HOH A 24 324 41 HOH HOH . 
E 3 HOH A 25 325 44 HOH HOH . 
E 3 HOH A 26 326 51 HOH HOH . 
E 3 HOH A 27 327 53 HOH HOH . 
E 3 HOH A 28 328 57 HOH HOH . 
E 3 HOH A 29 329 59 HOH HOH . 
E 3 HOH A 30 330 65 HOH HOH . 
E 3 HOH A 31 331 67 HOH HOH . 
E 3 HOH A 32 332 69 HOH HOH . 
E 3 HOH A 33 333 75 HOH HOH . 
E 3 HOH A 34 334 81 HOH HOH . 
E 3 HOH A 35 335 86 HOH HOH . 
E 3 HOH A 36 336 90 HOH HOH . 
E 3 HOH A 37 337 94 HOH HOH . 
E 3 HOH A 38 338 95 HOH HOH . 
E 3 HOH A 39 339 96 HOH HOH . 
E 3 HOH A 40 340 98 HOH HOH . 
E 3 HOH A 41 341 99 HOH HOH . 
E 3 HOH A 42 342 100 HOH HOH . 
E 3 HOH A 43 343 102 HOH HOH . 
F 3 HOH B 1 301 17 HOH HOH . 
F 3 HOH B 2 302 24 HOH HOH . 
F 3 HOH B 3 303 21 HOH HOH . 
F 3 HOH B 4 304 18 HOH HOH . 
F 3 HOH B 5 305 32 HOH HOH . 
F 3 HOH B 6 306 82 HOH HOH . 
F 3 HOH B 7 307 92 HOH HOH . 
F 3 HOH B 8 308 10 HOH HOH . 
F 3 HOH B 9 309 36 HOH HOH . 
F 3 HOH B 10 310 8 HOH HOH . 
F 3 HOH B 11 311 58 HOH HOH . 
F 3 HOH B 12 312 66 HOH HOH . 
F 3 HOH B 13 313 6 HOH HOH . 
F 3 HOH B 14 314 46 HOH HOH . 
F 3 HOH B 15 315 77 HOH HOH . 
F 3 HOH B 16 316 49 HOH HOH . 
F 3 HOH B 17 317 72 HOH HOH . 
F 3 HOH B 18 318 76 HOH HOH . 
F 3 HOH B 19 319 62 HOH HOH . 
F 3 HOH B 20 320 84 HOH HOH . 
F 3 HOH B 21 321 54 HOH HOH . 
F 3 HOH B 22 322 74 HOH HOH . 
F 3 HOH B 23 323 1 HOH HOH . 
F 3 HOH B 24 324 2 HOH HOH . 
F 3 HOH B 25 325 4 HOH HOH . 
F 3 HOH B 26 326 5 HOH HOH . 
F 3 HOH B 27 327 9 HOH HOH . 
F 3 HOH B 28 328 12 HOH HOH . 
F 3 HOH B 29 329 13 HOH HOH . 
F 3 HOH B 30 330 16 HOH HOH . 
F 3 HOH B 31 331 19 HOH HOH . 
F 3 HOH B 32 332 20 HOH HOH . 
F 3 HOH B 33 333 23 HOH HOH . 
F 3 HOH B 34 334 25 HOH HOH . 
F 3 HOH B 35 335 26 HOH HOH . 
F 3 HOH B 36 336 28 HOH HOH . 
F 3 HOH B 37 337 33 HOH HOH . 
F 3 HOH B 38 338 34 HOH HOH . 
F 3 HOH B 39 339 40 HOH HOH . 
F 3 HOH B 40 340 45 HOH HOH . 
F 3 HOH B 41 341 50 HOH HOH . 
F 3 HOH B 42 342 52 HOH HOH . 
F 3 HOH B 43 343 55 HOH HOH . 
F 3 HOH B 44 344 56 HOH HOH . 
F 3 HOH B 45 345 60 HOH HOH . 
F 3 HOH B 46 346 61 HOH HOH . 
F 3 HOH B 47 347 64 HOH HOH . 
F 3 HOH B 48 348 70 HOH HOH . 
F 3 HOH B 49 349 73 HOH HOH . 
F 3 HOH B 50 350 83 HOH HOH . 
F 3 HOH B 51 351 85 HOH HOH . 
F 3 HOH B 52 352 89 HOH HOH . 
F 3 HOH B 53 353 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TD2 . . . D 2 9.924 -44.24 -23.395 1 56.19 ? C1 TD2 201 B 1 
HETATM 2 C C2 TD2 . . . D 2 9.315 -42.873 -23.309 1 54.79 ? C2 TD2 201 B 1 
HETATM 3 C C3 TD2 . . . D 2 10.216 -41.874 -22.722 1 49.81 ? C3 TD2 201 B 1 
HETATM 4 C C4 TD2 . . . D 2 10.585 -42.265 -21.402 1 41.85 ? C4 TD2 201 B 1 
HETATM 5 C C5 TD2 . . . D 2 11.322 -43.582 -21.464 1 45.18 ? C5 TD2 201 B 1 
HETATM 6 C C6 TD2 . . . D 2 11.559 -44.173 -20.17 1 39 ? C6 TD2 201 B 1 
HETATM 7 N N9 TD2 . . . D 2 9.476 -38.508 -23.311 1 56.99 ? N9 TD2 201 B 1 
HETATM 8 C C12 TD2 . . . D 2 6.736 -52.529 -19.965 1 58.51 ? C12 TD2 201 B 1 
HETATM 9 C C13 TD2 . . . D 2 7.436 -53.086 -18.945 1 54.4 ? C13 TD2 201 B 1 
HETATM 10 C C14 TD2 . . . D 2 6.813 -53.873 -17.958 1 54.91 ? C14 TD2 201 B 1 
HETATM 11 C C11 TD2 . . . D 2 9.289 -46.953 -23.702 1 63.81 ? C11 TD2 201 B 1 
HETATM 12 S S1 TD2 . . . D 2 8.608 -45.341 -23.501 1 57.9 ? S1 TD2 201 B 1 
HETATM 13 O O5 TD2 . . . D 2 10.749 -44.639 -22.274 1 54.3 ? O5 TD2 201 B 1 
HETATM 14 O O51 TD2 . . . D 2 9.99 -47.182 -24.952 1 64.25 ? O51 TD2 201 B 1 
HETATM 15 C C51 TD2 . . . D 2 10.635 -48.504 -24.969 1 69.15 ? C51 TD2 201 B 1 
HETATM 16 C C61 TD2 . . . D 2 11.233 -48.753 -26.305 1 69.36 ? C61 TD2 201 B 1 
HETATM 17 O O6 TD2 . . . D 2 12.577 -45.021 -20.391 1 35.17 ? O6 TD2 201 B 1 
HETATM 18 O O61 TD2 . . . D 2 12.488 -49.29 -26.083 1 67.96 ? O61 TD2 201 B 1 
HETATM 19 C C41 TD2 . . . D 2 9.788 -49.678 -24.541 1 70.35 ? C41 TD2 201 B 1 
HETATM 20 O O4 TD2 . . . D 2 9.405 -42.358 -20.714 1 34.38 ? O4 TD2 201 B 1 
HETATM 21 O O41 TD2 . . . D 2 8.708 -49.765 -25.492 1 72.45 ? O41 TD2 201 B 1 
HETATM 22 C C31 TD2 . . . D 2 9.277 -49.342 -23.193 1 66.43 ? C31 TD2 201 B 1 
HETATM 23 C C21 TD2 . . . D 2 8.46 -48.118 -23.323 1 66.13 ? C21 TD2 201 B 1 
HETATM 24 O O2 TD2 . . . D 2 7.925 -47.962 -22.008 1 70.41 ? O2 TD2 201 B 1 
HETATM 25 O O21 TD2 . . . D 2 8.95 -42.46 -24.594 1 58.49 ? O21 TD2 201 B 1 
HETATM 26 N N7 TD2 . . . D 2 8.364 -50.233 -22.426 1 60.07 ? N7 TD2 201 B 1 
HETATM 27 C C8 TD2 . . . D 2 8.578 -51.089 -21.365 1 57.83 ? C8 TD2 201 B 1 
HETATM 28 C C9 TD2 . . . D 2 7.301 -51.598 -21.036 1 57.37 ? C9 TD2 201 B 1 
HETATM 29 N N10 TD2 . . . D 2 6.463 -50.951 -21.863 1 57.48 ? N10 TD2 201 B 1 
HETATM 30 N N11 TD2 . . . D 2 7.127 -50.173 -22.633 1 57.8 ? N11 TD2 201 B 1 
HETATM 31 N N71 TD2 . . . D 2 9.601 -40.559 -22.806 1 52.8 ? N71 TD2 201 B 1 
HETATM 32 N N8 TD2 . . . D 2 10.227 -39.514 -23.306 1 55.29 ? N8 TD2 201 B 1 
HETATM 33 C C10 TD2 . . . D 2 8.29 -38.852 -22.799 1 56.61 ? C10 TD2 201 B 1 
HETATM 34 C C71 TD2 . . . D 2 8.389 -40.24 -22.461 1 53.15 ? C71 TD2 201 B 1 
HETATM 35 C C15 TD2 . . . D 2 5.424 -54.091 -17.991 1 61.22 ? C15 TD2 201 B 1 
HETATM 36 C C16 TD2 . . . D 2 4.713 -53.534 -18.98 1 64.72 ? C16 TD2 201 B 1 
HETATM 37 C C17 TD2 . . . D 2 5.355 -52.717 -19.962 1 63.66 ? C17 TD2 201 B 1 
HETATM 38 C C22 TD2 . . . D 2 7.14 -37.895 -22.597 1 58.35 ? C22 TD2 201 B 1 
HETATM 39 C C23 TD2 . . . D 2 7.131 -36.732 -23.342 1 58.77 ? C23 TD2 201 B 1 
HETATM 40 C C24 TD2 . . . D 2 6.125 -35.784 -23.196 1 60.63 ? C24 TD2 201 B 1 
HETATM 41 C C25 TD2 . . . D 2 5.14 -36.009 -22.292 1 63.22 ? C25 TD2 201 B 1 
HETATM 42 C C26 TD2 . . . D 2 5.156 -37.159 -21.541 1 63.71 ? C26 TD2 201 B 1 
HETATM 43 C C27 TD2 . . . D 2 6.177 -38.117 -21.706 1 60.61 ? C27 TD2 201 B 1 
HETATM 44 F F18 TD2 . . . D 2 7.52 -54.434 -17.007 1 50.36 ? F18 TD2 201 B 1 
HETATM 45 F F28 TD2 . . . D 2 4.196 -37.368 -20.647 1 66.17 ? F28 TD2 201 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           45 
#