data_4Y29 # _model_server_result.job_id U2Z-ZX9PIuOapeXQI98bMw _model_server_result.datetime_utc '2024-10-12 15:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4Y29 # _exptl.entry_id 4Y29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.372 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.07 _cell.angle_gamma 90 _cell.entry_id 4Y29 _cell.length_a 43.624 _cell.length_b 54.514 _cell.length_c 66.402 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H18 N O4 1' _chem_comp.formula_weight 348.372 _chem_comp.id CTI _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms chelerythrine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CTI doub 70 n y C1 C22 CTI sing 71 n y C2 C3 CTI sing 72 n y C2 C5 CTI sing 73 n y C3 C4 CTI doub 74 n y C3 C8 CTI sing 75 n y C4 C23 CTI sing 76 n y C5 C6 CTI doub 77 n y C5 N9 CTI sing 78 n y C6 C7 CTI sing 79 n y C6 C10 CTI sing 80 n y C7 C8 CTI doub 81 n y N9 C12 CTI doub 82 n y N9 C13 CTI sing 83 n n C10 C11 CTI doub 84 n y C10 C16 CTI sing 85 n y C11 C12 CTI sing 86 n y C11 C17 CTI sing 87 n y C14 C15 CTI sing 88 n y C14 C17 CTI doub 89 n y C14 O20 CTI sing 90 n n C15 C16 CTI doub 91 n y C17 O18 CTI sing 92 n n O18 C19 CTI sing 93 n n O20 C21 CTI sing 94 n n C22 C23 CTI doub 95 n y C22 O24 CTI sing 96 n n C23 O26 CTI sing 97 n n O24 C25 CTI sing 98 n n C25 O26 CTI sing 99 n n C1 H1 CTI sing 100 n n C4 H4 CTI sing 101 n n C7 H7 CTI sing 102 n n C8 H8 CTI sing 103 n n C12 H12 CTI sing 104 n n C13 H13 CTI sing 105 n n C13 H13A CTI sing 106 n n C13 H13B CTI sing 107 n n C15 H15 CTI sing 108 n n C16 H16 CTI sing 109 n n C19 H19 CTI sing 110 n n C19 H19A CTI sing 111 n n C19 H19B CTI sing 112 n n C21 H21 CTI sing 113 n n C21 H21A CTI sing 114 n n C21 H21B CTI sing 115 n n C25 H25 CTI sing 116 n n C25 H25A CTI sing 117 n n # _atom_sites.entry_id 4Y29 _atom_sites.fract_transf_matrix[1][1] 0.022923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CTI A 1 501 501 CTI CTI . D 4 HOH A 1 601 605 HOH HOH . D 4 HOH A 2 602 601 HOH HOH . D 4 HOH A 3 603 611 HOH HOH . D 4 HOH A 4 604 602 HOH HOH . D 4 HOH A 5 605 607 HOH HOH . D 4 HOH A 6 606 617 HOH HOH . D 4 HOH A 7 607 604 HOH HOH . D 4 HOH A 8 608 606 HOH HOH . D 4 HOH A 9 609 612 HOH HOH . D 4 HOH A 10 610 613 HOH HOH . D 4 HOH A 11 611 618 HOH HOH . D 4 HOH A 12 612 615 HOH HOH . D 4 HOH A 13 613 614 HOH HOH . D 4 HOH A 14 614 603 HOH HOH . D 4 HOH A 15 615 609 HOH HOH . D 4 HOH A 16 616 629 HOH HOH . D 4 HOH A 17 617 610 HOH HOH . D 4 HOH A 18 618 623 HOH HOH . D 4 HOH A 19 619 621 HOH HOH . D 4 HOH A 20 620 627 HOH HOH . D 4 HOH A 21 621 616 HOH HOH . D 4 HOH A 22 622 620 HOH HOH . D 4 HOH A 23 623 619 HOH HOH . D 4 HOH A 24 624 626 HOH HOH . D 4 HOH A 25 625 622 HOH HOH . D 4 HOH A 26 626 628 HOH HOH . D 4 HOH A 27 627 608 HOH HOH . D 4 HOH A 28 628 625 HOH HOH . D 4 HOH A 29 629 637 HOH HOH . D 4 HOH A 30 630 632 HOH HOH . D 4 HOH A 31 631 644 HOH HOH . D 4 HOH A 32 632 645 HOH HOH . D 4 HOH A 33 633 652 HOH HOH . D 4 HOH A 34 634 638 HOH HOH . D 4 HOH A 35 635 648 HOH HOH . D 4 HOH A 36 636 647 HOH HOH . D 4 HOH A 37 637 624 HOH HOH . D 4 HOH A 38 638 630 HOH HOH . D 4 HOH A 39 639 653 HOH HOH . D 4 HOH A 40 640 640 HOH HOH . D 4 HOH A 41 641 650 HOH HOH . D 4 HOH A 42 642 654 HOH HOH . D 4 HOH A 43 643 633 HOH HOH . D 4 HOH A 44 644 635 HOH HOH . D 4 HOH A 45 645 662 HOH HOH . D 4 HOH A 46 646 636 HOH HOH . D 4 HOH A 47 647 659 HOH HOH . D 4 HOH A 48 648 642 HOH HOH . D 4 HOH A 49 649 657 HOH HOH . D 4 HOH A 50 650 641 HOH HOH . D 4 HOH A 51 651 651 HOH HOH . D 4 HOH A 52 652 660 HOH HOH . D 4 HOH A 53 653 634 HOH HOH . D 4 HOH A 54 654 646 HOH HOH . D 4 HOH A 55 655 655 HOH HOH . D 4 HOH A 56 656 665 HOH HOH . D 4 HOH A 57 657 643 HOH HOH . D 4 HOH A 58 658 668 HOH HOH . D 4 HOH A 59 659 656 HOH HOH . D 4 HOH A 60 660 676 HOH HOH . D 4 HOH A 61 661 667 HOH HOH . D 4 HOH A 62 662 639 HOH HOH . D 4 HOH A 63 663 675 HOH HOH . D 4 HOH A 64 664 663 HOH HOH . D 4 HOH A 65 665 683 HOH HOH . D 4 HOH A 66 666 666 HOH HOH . D 4 HOH A 67 667 685 HOH HOH . D 4 HOH A 68 668 649 HOH HOH . D 4 HOH A 69 669 677 HOH HOH . D 4 HOH A 70 670 658 HOH HOH . D 4 HOH A 71 671 664 HOH HOH . D 4 HOH A 72 672 671 HOH HOH . D 4 HOH A 73 673 672 HOH HOH . D 4 HOH A 74 674 679 HOH HOH . D 4 HOH A 75 675 661 HOH HOH . D 4 HOH A 76 676 670 HOH HOH . D 4 HOH A 77 677 687 HOH HOH . D 4 HOH A 78 678 689 HOH HOH . D 4 HOH A 79 679 678 HOH HOH . D 4 HOH A 80 680 688 HOH HOH . D 4 HOH A 81 681 701 HOH HOH . D 4 HOH A 82 682 706 HOH HOH . D 4 HOH A 83 683 680 HOH HOH . D 4 HOH A 84 684 669 HOH HOH . D 4 HOH A 85 685 697 HOH HOH . D 4 HOH A 86 686 693 HOH HOH . D 4 HOH A 87 687 681 HOH HOH . D 4 HOH A 88 688 682 HOH HOH . D 4 HOH A 89 689 699 HOH HOH . D 4 HOH A 90 690 691 HOH HOH . D 4 HOH A 91 691 700 HOH HOH . D 4 HOH A 92 692 696 HOH HOH . D 4 HOH A 93 693 686 HOH HOH . D 4 HOH A 94 694 690 HOH HOH . D 4 HOH A 95 695 728 HOH HOH . D 4 HOH A 96 696 709 HOH HOH . D 4 HOH A 97 697 711 HOH HOH . D 4 HOH A 98 698 708 HOH HOH . D 4 HOH A 99 699 727 HOH HOH . D 4 HOH A 100 700 684 HOH HOH . D 4 HOH A 101 701 703 HOH HOH . D 4 HOH A 102 702 692 HOH HOH . D 4 HOH A 103 703 717 HOH HOH . D 4 HOH A 104 704 704 HOH HOH . D 4 HOH A 105 705 694 HOH HOH . D 4 HOH A 106 706 702 HOH HOH . D 4 HOH A 107 707 723 HOH HOH . D 4 HOH A 108 708 720 HOH HOH . D 4 HOH A 109 709 710 HOH HOH . D 4 HOH A 110 710 724 HOH HOH . D 4 HOH A 111 711 698 HOH HOH . D 4 HOH A 112 712 719 HOH HOH . D 4 HOH A 113 713 714 HOH HOH . D 4 HOH A 114 714 715 HOH HOH . D 4 HOH A 115 715 713 HOH HOH . D 4 HOH A 116 716 718 HOH HOH . D 4 HOH A 117 717 707 HOH HOH . D 4 HOH A 118 718 721 HOH HOH . D 4 HOH A 119 719 695 HOH HOH . D 4 HOH A 120 720 726 HOH HOH . D 4 HOH A 121 721 732 HOH HOH . D 4 HOH A 122 722 712 HOH HOH . D 4 HOH A 123 723 730 HOH HOH . D 4 HOH A 124 724 729 HOH HOH . D 4 HOH A 125 725 733 HOH HOH . D 4 HOH A 126 726 705 HOH HOH . D 4 HOH A 127 727 735 HOH HOH . D 4 HOH A 128 728 736 HOH HOH . D 4 HOH A 129 729 734 HOH HOH . D 4 HOH A 130 730 716 HOH HOH . D 4 HOH A 131 731 737 HOH HOH . D 4 HOH A 132 732 731 HOH HOH . D 4 HOH A 133 733 738 HOH HOH . D 4 HOH A 134 734 739 HOH HOH . D 4 HOH A 135 735 722 HOH HOH . D 4 HOH A 136 736 745 HOH HOH . D 4 HOH A 137 737 748 HOH HOH . D 4 HOH A 138 738 742 HOH HOH . D 4 HOH A 139 739 746 HOH HOH . D 4 HOH A 140 740 743 HOH HOH . D 4 HOH A 141 741 750 HOH HOH . D 4 HOH A 142 742 741 HOH HOH . D 4 HOH A 143 743 753 HOH HOH . D 4 HOH A 144 744 747 HOH HOH . D 4 HOH A 145 745 749 HOH HOH . D 4 HOH A 146 746 744 HOH HOH . D 4 HOH A 147 747 752 HOH HOH . D 4 HOH A 148 748 740 HOH HOH . D 4 HOH A 149 749 755 HOH HOH . D 4 HOH A 150 750 754 HOH HOH . D 4 HOH A 151 751 756 HOH HOH . D 4 HOH A 152 752 757 HOH HOH . D 4 HOH A 153 753 759 HOH HOH . D 4 HOH A 154 754 758 HOH HOH . D 4 HOH A 155 755 766 HOH HOH . D 4 HOH A 156 756 760 HOH HOH . D 4 HOH A 157 757 765 HOH HOH . D 4 HOH A 158 758 762 HOH HOH . D 4 HOH A 159 759 761 HOH HOH . D 4 HOH A 160 760 764 HOH HOH . D 4 HOH A 161 761 767 HOH HOH . D 4 HOH A 162 762 763 HOH HOH . D 4 HOH A 163 763 768 HOH HOH . D 4 HOH A 164 764 773 HOH HOH . D 4 HOH A 165 765 770 HOH HOH . D 4 HOH A 166 766 772 HOH HOH . D 4 HOH A 167 767 769 HOH HOH . D 4 HOH A 168 768 776 HOH HOH . D 4 HOH A 169 769 778 HOH HOH . D 4 HOH A 170 770 779 HOH HOH . D 4 HOH A 171 771 775 HOH HOH . D 4 HOH A 172 772 774 HOH HOH . D 4 HOH A 173 773 777 HOH HOH . D 4 HOH A 174 774 780 HOH HOH . D 4 HOH A 175 775 781 HOH HOH . D 4 HOH A 176 776 783 HOH HOH . D 4 HOH A 177 777 786 HOH HOH . D 4 HOH A 178 778 784 HOH HOH . D 4 HOH A 179 779 785 HOH HOH . D 4 HOH A 180 780 787 HOH HOH . D 4 HOH A 181 781 782 HOH HOH . D 4 HOH A 182 782 791 HOH HOH . D 4 HOH A 183 783 788 HOH HOH . D 4 HOH A 184 784 790 HOH HOH . D 4 HOH A 185 785 793 HOH HOH . D 4 HOH A 186 786 792 HOH HOH . D 4 HOH A 187 787 794 HOH HOH . D 4 HOH A 188 788 796 HOH HOH . D 4 HOH A 189 789 795 HOH HOH . D 4 HOH A 190 790 797 HOH HOH . D 4 HOH A 191 791 798 HOH HOH . D 4 HOH A 192 792 799 HOH HOH . D 4 HOH A 193 793 800 HOH HOH . D 4 HOH A 194 794 801 HOH HOH . E 4 HOH B 1 1501 1502 HOH HOH . E 4 HOH B 2 1502 1503 HOH HOH . E 4 HOH B 3 1503 1504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CTI . . . C 3 2.913 -4.092 24.699 1 41.95 ? C1 CTI 501 A 1 HETATM 2 C C2 CTI . . . C 3 3.521 -3.216 23.777 1 40.5 ? C2 CTI 501 A 1 HETATM 3 C C3 CTI . . . C 3 2.809 -2.014 23.441 1 40.95 ? C3 CTI 501 A 1 HETATM 4 C C4 CTI . . . C 3 1.565 -1.706 23.985 1 39.83 ? C4 CTI 501 A 1 HETATM 5 C C5 CTI . . . C 3 4.79 -3.488 23.18 1 40.68 ? C5 CTI 501 A 1 HETATM 6 C C6 CTI . . . C 3 5.247 -2.504 22.291 1 39.39 ? C6 CTI 501 A 1 HETATM 7 C C7 CTI . . . C 3 4.529 -1.355 21.986 1 40.27 ? C7 CTI 501 A 1 HETATM 8 C C8 CTI . . . C 3 3.298 -1.07 22.551 1 41.28 ? C8 CTI 501 A 1 HETATM 9 N N9 CTI . . . C 3 5.574 -4.58 23.408 1 38.04 ? N9 CTI 501 A 1 HETATM 10 C C10 CTI . . . C 3 6.46 -2.615 21.64 1 38.78 ? C10 CTI 501 A 1 HETATM 11 C C11 CTI . . . C 3 7.291 -3.721 21.885 1 39.28 ? C11 CTI 501 A 1 HETATM 12 C C12 CTI . . . C 3 6.843 -4.75 22.75 1 40.09 ? C12 CTI 501 A 1 HETATM 13 C C13 CTI . . . C 3 5.172 -5.665 24.357 1 41.86 ? C13 CTI 501 A 1 HETATM 14 C C14 CTI . . . C 3 8.813 -2.692 20.363 1 38.34 ? C14 CTI 501 A 1 HETATM 15 C C15 CTI . . . C 3 7.982 -1.587 20.155 1 37.25 ? C15 CTI 501 A 1 HETATM 16 C C16 CTI . . . C 3 6.754 -1.552 20.788 1 35.68 ? C16 CTI 501 A 1 HETATM 17 C C17 CTI . . . C 3 8.529 -3.787 21.24 1 39.21 ? C17 CTI 501 A 1 HETATM 18 O O18 CTI . . . C 3 9.354 -4.994 21.432 1 37.91 ? O18 CTI 501 A 1 HETATM 19 C C19 CTI . . . C 3 10.813 -5.258 21.534 1 28.54 ? C19 CTI 501 A 1 HETATM 20 O O20 CTI . . . C 3 9.969 -2.668 19.631 1 42.91 ? O20 CTI 501 A 1 HETATM 21 C C21 CTI . . . C 3 9.9 -1.334 18.972 1 29.12 ? C21 CTI 501 A 1 HETATM 22 C C22 CTI . . . C 3 1.711 -3.747 25.196 1 38.62 ? C22 CTI 501 A 1 HETATM 23 C C23 CTI . . . C 3 1.059 -2.603 24.841 1 40.36 ? C23 CTI 501 A 1 HETATM 24 O O24 CTI . . . C 3 0.956 -4.458 26.108 1 44.85 ? O24 CTI 501 A 1 HETATM 25 C C25 CTI . . . C 3 -0.454 -3.909 25.927 1 39.62 ? C25 CTI 501 A 1 HETATM 26 O O26 CTI . . . C 3 -0.152 -2.501 25.495 1 38.63 ? O26 CTI 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #