data_4Y2B # _model_server_result.job_id ccQHZ-INOt_wJelcEC1suA _model_server_result.datetime_utc '2024-11-28 00:26:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4Y2B # _exptl.entry_id 4Y2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y2B _cell.length_a 115.961 _cell.length_b 115.961 _cell.length_c 64.409 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 123 A HIS 216 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A NE2 HIS 159 A HIS 252 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 A OD2 ASP 160 A ASP 253 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc4 A OD1 ASP 160 A ASP 253 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 A OD1 ASP 269 A ASP 362 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc6 B ZN ZN . A ZN 501 1_555 E O HOH . A HOH 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc7 B ZN ZN . A ZN 501 1_555 E O HOH . A HOH 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc8 C MG MG . A MG 502 1_555 E O HOH . A HOH 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 C MG MG . A MG 502 1_555 E O HOH . A HOH 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc10 C MG MG . A MG 502 1_555 E O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 C MG MG . A MG 502 1_555 E O HOH . A HOH 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc12 C MG MG . A MG 502 1_555 E O HOH . A HOH 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Y2B _atom_sites.fract_transf_matrix[1][1] 0.008624 _atom_sites.fract_transf_matrix[1][2] 0.004979 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 MG A 1 502 502 MG MG . D 4 EPK A 1 503 900 EPK UNK . E 5 HOH A 1 601 131 HOH HOH . E 5 HOH A 2 602 119 HOH HOH . E 5 HOH A 3 603 189 HOH HOH . E 5 HOH A 4 604 88 HOH HOH . E 5 HOH A 5 605 186 HOH HOH . E 5 HOH A 6 606 47 HOH HOH . E 5 HOH A 7 607 60 HOH HOH . E 5 HOH A 8 608 130 HOH HOH . E 5 HOH A 9 609 35 HOH HOH . E 5 HOH A 10 610 163 HOH HOH . E 5 HOH A 11 611 145 HOH HOH . E 5 HOH A 12 612 37 HOH HOH . E 5 HOH A 13 613 132 HOH HOH . E 5 HOH A 14 614 40 HOH HOH . E 5 HOH A 15 615 50 HOH HOH . E 5 HOH A 16 616 134 HOH HOH . E 5 HOH A 17 617 154 HOH HOH . E 5 HOH A 18 618 82 HOH HOH . E 5 HOH A 19 619 81 HOH HOH . E 5 HOH A 20 620 66 HOH HOH . E 5 HOH A 21 621 61 HOH HOH . E 5 HOH A 22 622 20 HOH HOH . E 5 HOH A 23 623 69 HOH HOH . E 5 HOH A 24 624 73 HOH HOH . E 5 HOH A 25 625 146 HOH HOH . E 5 HOH A 26 626 174 HOH HOH . E 5 HOH A 27 627 114 HOH HOH . E 5 HOH A 28 628 8 HOH HOH . E 5 HOH A 29 629 96 HOH HOH . E 5 HOH A 30 630 10 HOH HOH . E 5 HOH A 31 631 275 HOH HOH . E 5 HOH A 32 632 46 HOH HOH . E 5 HOH A 33 633 214 HOH HOH . E 5 HOH A 34 634 213 HOH HOH . E 5 HOH A 35 635 143 HOH HOH . E 5 HOH A 36 636 17 HOH HOH . E 5 HOH A 37 637 218 HOH HOH . E 5 HOH A 38 638 48 HOH HOH . E 5 HOH A 39 639 185 HOH HOH . E 5 HOH A 40 640 193 HOH HOH . E 5 HOH A 41 641 166 HOH HOH . E 5 HOH A 42 642 207 HOH HOH . E 5 HOH A 43 643 173 HOH HOH . E 5 HOH A 44 644 7 HOH HOH . E 5 HOH A 45 645 215 HOH HOH . E 5 HOH A 46 646 76 HOH HOH . E 5 HOH A 47 647 260 HOH HOH . E 5 HOH A 48 648 89 HOH HOH . E 5 HOH A 49 649 85 HOH HOH . E 5 HOH A 50 650 68 HOH HOH . E 5 HOH A 51 651 84 HOH HOH . E 5 HOH A 52 652 65 HOH HOH . E 5 HOH A 53 653 239 HOH HOH . E 5 HOH A 54 654 39 HOH HOH . E 5 HOH A 55 655 110 HOH HOH . E 5 HOH A 56 656 42 HOH HOH . E 5 HOH A 57 657 53 HOH HOH . E 5 HOH A 58 658 202 HOH HOH . E 5 HOH A 59 659 27 HOH HOH . E 5 HOH A 60 660 150 HOH HOH . E 5 HOH A 61 661 198 HOH HOH . E 5 HOH A 62 662 106 HOH HOH . E 5 HOH A 63 663 183 HOH HOH . E 5 HOH A 64 664 168 HOH HOH . E 5 HOH A 65 665 279 HOH HOH . E 5 HOH A 66 666 138 HOH HOH . E 5 HOH A 67 667 241 HOH HOH . E 5 HOH A 68 668 91 HOH HOH . E 5 HOH A 69 669 256 HOH HOH . E 5 HOH A 70 670 224 HOH HOH . E 5 HOH A 71 671 227 HOH HOH . E 5 HOH A 72 672 179 HOH HOH . E 5 HOH A 73 673 156 HOH HOH . E 5 HOH A 74 674 122 HOH HOH . E 5 HOH A 75 675 136 HOH HOH . E 5 HOH A 76 676 220 HOH HOH . E 5 HOH A 77 677 236 HOH HOH . E 5 HOH A 78 678 133 HOH HOH . E 5 HOH A 79 679 233 HOH HOH . E 5 HOH A 80 680 116 HOH HOH . E 5 HOH A 81 681 93 HOH HOH . E 5 HOH A 82 682 259 HOH HOH . E 5 HOH A 83 683 121 HOH HOH . E 5 HOH A 84 684 212 HOH HOH . E 5 HOH A 85 685 184 HOH HOH . E 5 HOH A 86 686 1 HOH HOH . E 5 HOH A 87 687 2 HOH HOH . E 5 HOH A 88 688 3 HOH HOH . E 5 HOH A 89 689 4 HOH HOH . E 5 HOH A 90 690 5 HOH HOH . E 5 HOH A 91 691 6 HOH HOH . E 5 HOH A 92 692 9 HOH HOH . E 5 HOH A 93 693 11 HOH HOH . E 5 HOH A 94 694 12 HOH HOH . E 5 HOH A 95 695 13 HOH HOH . E 5 HOH A 96 696 14 HOH HOH . E 5 HOH A 97 697 15 HOH HOH . E 5 HOH A 98 698 16 HOH HOH . E 5 HOH A 99 699 18 HOH HOH . E 5 HOH A 100 700 19 HOH HOH . E 5 HOH A 101 701 21 HOH HOH . E 5 HOH A 102 702 22 HOH HOH . E 5 HOH A 103 703 23 HOH HOH . E 5 HOH A 104 704 24 HOH HOH . E 5 HOH A 105 705 25 HOH HOH . E 5 HOH A 106 706 26 HOH HOH . E 5 HOH A 107 707 28 HOH HOH . E 5 HOH A 108 708 29 HOH HOH . E 5 HOH A 109 709 30 HOH HOH . E 5 HOH A 110 710 31 HOH HOH . E 5 HOH A 111 711 32 HOH HOH . E 5 HOH A 112 712 33 HOH HOH . E 5 HOH A 113 713 34 HOH HOH . E 5 HOH A 114 714 36 HOH HOH . E 5 HOH A 115 715 38 HOH HOH . E 5 HOH A 116 716 41 HOH HOH . E 5 HOH A 117 717 43 HOH HOH . E 5 HOH A 118 718 44 HOH HOH . E 5 HOH A 119 719 45 HOH HOH . E 5 HOH A 120 720 49 HOH HOH . E 5 HOH A 121 721 51 HOH HOH . E 5 HOH A 122 722 52 HOH HOH . E 5 HOH A 123 723 54 HOH HOH . E 5 HOH A 124 724 55 HOH HOH . E 5 HOH A 125 725 56 HOH HOH . E 5 HOH A 126 726 57 HOH HOH . E 5 HOH A 127 727 58 HOH HOH . E 5 HOH A 128 728 59 HOH HOH . E 5 HOH A 129 729 62 HOH HOH . E 5 HOH A 130 730 63 HOH HOH . E 5 HOH A 131 731 64 HOH HOH . E 5 HOH A 132 732 67 HOH HOH . E 5 HOH A 133 733 70 HOH HOH . E 5 HOH A 134 734 71 HOH HOH . E 5 HOH A 135 735 72 HOH HOH . E 5 HOH A 136 736 74 HOH HOH . E 5 HOH A 137 737 75 HOH HOH . E 5 HOH A 138 738 77 HOH HOH . E 5 HOH A 139 739 78 HOH HOH . E 5 HOH A 140 740 79 HOH HOH . E 5 HOH A 141 741 80 HOH HOH . E 5 HOH A 142 742 83 HOH HOH . E 5 HOH A 143 743 86 HOH HOH . E 5 HOH A 144 744 87 HOH HOH . E 5 HOH A 145 745 90 HOH HOH . E 5 HOH A 146 746 92 HOH HOH . E 5 HOH A 147 747 94 HOH HOH . E 5 HOH A 148 748 95 HOH HOH . E 5 HOH A 149 749 97 HOH HOH . E 5 HOH A 150 750 98 HOH HOH . E 5 HOH A 151 751 99 HOH HOH . E 5 HOH A 152 752 100 HOH HOH . E 5 HOH A 153 753 101 HOH HOH . E 5 HOH A 154 754 102 HOH HOH . E 5 HOH A 155 755 103 HOH HOH . E 5 HOH A 156 756 104 HOH HOH . E 5 HOH A 157 757 105 HOH HOH . E 5 HOH A 158 758 107 HOH HOH . E 5 HOH A 159 759 108 HOH HOH . E 5 HOH A 160 760 109 HOH HOH . E 5 HOH A 161 761 111 HOH HOH . E 5 HOH A 162 762 112 HOH HOH . E 5 HOH A 163 763 113 HOH HOH . E 5 HOH A 164 764 115 HOH HOH . E 5 HOH A 165 765 117 HOH HOH . E 5 HOH A 166 766 118 HOH HOH . E 5 HOH A 167 767 120 HOH HOH . E 5 HOH A 168 768 123 HOH HOH . E 5 HOH A 169 769 124 HOH HOH . E 5 HOH A 170 770 125 HOH HOH . E 5 HOH A 171 771 126 HOH HOH . E 5 HOH A 172 772 127 HOH HOH . E 5 HOH A 173 773 128 HOH HOH . E 5 HOH A 174 774 129 HOH HOH . E 5 HOH A 175 775 135 HOH HOH . E 5 HOH A 176 776 137 HOH HOH . E 5 HOH A 177 777 139 HOH HOH . E 5 HOH A 178 778 140 HOH HOH . E 5 HOH A 179 779 141 HOH HOH . E 5 HOH A 180 780 142 HOH HOH . E 5 HOH A 181 781 144 HOH HOH . E 5 HOH A 182 782 147 HOH HOH . E 5 HOH A 183 783 148 HOH HOH . E 5 HOH A 184 784 149 HOH HOH . E 5 HOH A 185 785 151 HOH HOH . E 5 HOH A 186 786 152 HOH HOH . E 5 HOH A 187 787 153 HOH HOH . E 5 HOH A 188 788 155 HOH HOH . E 5 HOH A 189 789 157 HOH HOH . E 5 HOH A 190 790 158 HOH HOH . E 5 HOH A 191 791 159 HOH HOH . E 5 HOH A 192 792 160 HOH HOH . E 5 HOH A 193 793 161 HOH HOH . E 5 HOH A 194 794 162 HOH HOH . E 5 HOH A 195 795 164 HOH HOH . E 5 HOH A 196 796 165 HOH HOH . E 5 HOH A 197 797 167 HOH HOH . E 5 HOH A 198 798 169 HOH HOH . E 5 HOH A 199 799 170 HOH HOH . E 5 HOH A 200 800 171 HOH HOH . E 5 HOH A 201 801 172 HOH HOH . E 5 HOH A 202 802 175 HOH HOH . E 5 HOH A 203 803 176 HOH HOH . E 5 HOH A 204 804 177 HOH HOH . E 5 HOH A 205 805 178 HOH HOH . E 5 HOH A 206 806 180 HOH HOH . E 5 HOH A 207 807 181 HOH HOH . E 5 HOH A 208 808 182 HOH HOH . E 5 HOH A 209 809 187 HOH HOH . E 5 HOH A 210 810 188 HOH HOH . E 5 HOH A 211 811 190 HOH HOH . E 5 HOH A 212 812 191 HOH HOH . E 5 HOH A 213 813 192 HOH HOH . E 5 HOH A 214 814 194 HOH HOH . E 5 HOH A 215 815 195 HOH HOH . E 5 HOH A 216 816 196 HOH HOH . E 5 HOH A 217 817 197 HOH HOH . E 5 HOH A 218 818 199 HOH HOH . E 5 HOH A 219 819 200 HOH HOH . E 5 HOH A 220 820 201 HOH HOH . E 5 HOH A 221 821 203 HOH HOH . E 5 HOH A 222 822 204 HOH HOH . E 5 HOH A 223 823 205 HOH HOH . E 5 HOH A 224 824 206 HOH HOH . E 5 HOH A 225 825 208 HOH HOH . E 5 HOH A 226 826 209 HOH HOH . E 5 HOH A 227 827 210 HOH HOH . E 5 HOH A 228 828 211 HOH HOH . E 5 HOH A 229 829 216 HOH HOH . E 5 HOH A 230 830 217 HOH HOH . E 5 HOH A 231 831 219 HOH HOH . E 5 HOH A 232 832 221 HOH HOH . E 5 HOH A 233 833 222 HOH HOH . E 5 HOH A 234 834 223 HOH HOH . E 5 HOH A 235 835 225 HOH HOH . E 5 HOH A 236 836 226 HOH HOH . E 5 HOH A 237 837 228 HOH HOH . E 5 HOH A 238 838 229 HOH HOH . E 5 HOH A 239 839 230 HOH HOH . E 5 HOH A 240 840 231 HOH HOH . E 5 HOH A 241 841 232 HOH HOH . E 5 HOH A 242 842 234 HOH HOH . E 5 HOH A 243 843 235 HOH HOH . E 5 HOH A 244 844 237 HOH HOH . E 5 HOH A 245 845 238 HOH HOH . E 5 HOH A 246 846 240 HOH HOH . E 5 HOH A 247 847 242 HOH HOH . E 5 HOH A 248 848 243 HOH HOH . E 5 HOH A 249 849 244 HOH HOH . E 5 HOH A 250 850 245 HOH HOH . E 5 HOH A 251 851 246 HOH HOH . E 5 HOH A 252 852 247 HOH HOH . E 5 HOH A 253 853 248 HOH HOH . E 5 HOH A 254 854 249 HOH HOH . E 5 HOH A 255 855 250 HOH HOH . E 5 HOH A 256 856 251 HOH HOH . E 5 HOH A 257 857 252 HOH HOH . E 5 HOH A 258 858 253 HOH HOH . E 5 HOH A 259 859 254 HOH HOH . E 5 HOH A 260 860 255 HOH HOH . E 5 HOH A 261 861 257 HOH HOH . E 5 HOH A 262 862 258 HOH HOH . E 5 HOH A 263 863 261 HOH HOH . E 5 HOH A 264 864 262 HOH HOH . E 5 HOH A 265 865 263 HOH HOH . E 5 HOH A 266 866 264 HOH HOH . E 5 HOH A 267 867 265 HOH HOH . E 5 HOH A 268 868 266 HOH HOH . E 5 HOH A 269 869 267 HOH HOH . E 5 HOH A 270 870 268 HOH HOH . E 5 HOH A 271 871 269 HOH HOH . E 5 HOH A 272 872 270 HOH HOH . E 5 HOH A 273 873 271 HOH HOH . E 5 HOH A 274 874 272 HOH HOH . E 5 HOH A 275 875 273 HOH HOH . E 5 HOH A 276 876 274 HOH HOH . E 5 HOH A 277 877 276 HOH HOH . E 5 HOH A 278 878 277 HOH HOH . E 5 HOH A 279 879 278 HOH HOH . E 5 HOH A 280 880 280 HOH HOH . E 5 HOH A 281 881 281 HOH HOH . E 5 HOH A 282 882 282 HOH HOH . E 5 HOH A 283 883 283 HOH HOH . E 5 HOH A 284 884 284 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -37.241 _atom_site.Cartn_y 30.612 _atom_site.Cartn_z -1.66 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #