data_4Y2C
#
_model_server_result.job_id            80xPy5b4nKTqUH7JLf72kQ 
_model_server_result.datetime_utc      '2024-12-26 19:37:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y2c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    4Y2C 
#
_exptl.entry_id    4Y2C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Y2C 
_cell.length_a            122.632 
_cell.length_b            122.632 
_cell.length_c            198.459 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y2C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4Y2C 
_atom_sites.fract_transf_matrix[1][1]    0.008154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008154 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 507 GOL GOL . 
C 2 GOL A 1 502 508 GOL GOL . 
D 2 GOL A 1 503 509 GOL GOL . 
E 2 GOL A 1 504 510 GOL GOL . 
F 3 HOH A 1 601 208 HOH HOH . 
F 3 HOH A 2 602 12 HOH HOH . 
F 3 HOH A 3 603 73 HOH HOH . 
F 3 HOH A 4 604 75 HOH HOH . 
F 3 HOH A 5 605 165 HOH HOH . 
F 3 HOH A 6 606 8 HOH HOH . 
F 3 HOH A 7 607 112 HOH HOH . 
F 3 HOH A 8 608 11 HOH HOH . 
F 3 HOH A 9 609 10 HOH HOH . 
F 3 HOH A 10 610 4 HOH HOH . 
F 3 HOH A 11 611 24 HOH HOH . 
F 3 HOH A 12 612 206 HOH HOH . 
F 3 HOH A 13 613 243 HOH HOH . 
F 3 HOH A 14 614 229 HOH HOH . 
F 3 HOH A 15 615 18 HOH HOH . 
F 3 HOH A 16 616 2 HOH HOH . 
F 3 HOH A 17 617 86 HOH HOH . 
F 3 HOH A 18 618 121 HOH HOH . 
F 3 HOH A 19 619 235 HOH HOH . 
F 3 HOH A 20 620 6 HOH HOH . 
F 3 HOH A 21 621 209 HOH HOH . 
F 3 HOH A 22 622 61 HOH HOH . 
F 3 HOH A 23 623 142 HOH HOH . 
F 3 HOH A 24 624 230 HOH HOH . 
F 3 HOH A 25 625 168 HOH HOH . 
F 3 HOH A 26 626 97 HOH HOH . 
F 3 HOH A 27 627 196 HOH HOH . 
F 3 HOH A 28 628 180 HOH HOH . 
F 3 HOH A 29 629 232 HOH HOH . 
F 3 HOH A 30 630 213 HOH HOH . 
F 3 HOH A 31 631 160 HOH HOH . 
F 3 HOH A 32 632 199 HOH HOH . 
F 3 HOH A 33 633 214 HOH HOH . 
F 3 HOH A 34 634 231 HOH HOH . 
F 3 HOH A 35 635 200 HOH HOH . 
F 3 HOH A 36 636 40 HOH HOH . 
F 3 HOH A 37 637 205 HOH HOH . 
F 3 HOH A 38 638 222 HOH HOH . 
F 3 HOH A 39 639 237 HOH HOH . 
F 3 HOH A 40 640 3 HOH HOH . 
F 3 HOH A 41 641 5 HOH HOH . 
F 3 HOH A 42 642 7 HOH HOH . 
F 3 HOH A 43 643 9 HOH HOH . 
F 3 HOH A 44 644 13 HOH HOH . 
F 3 HOH A 45 645 14 HOH HOH . 
F 3 HOH A 46 646 15 HOH HOH . 
F 3 HOH A 47 647 16 HOH HOH . 
F 3 HOH A 48 648 17 HOH HOH . 
F 3 HOH A 49 649 19 HOH HOH . 
F 3 HOH A 50 650 25 HOH HOH . 
F 3 HOH A 51 651 26 HOH HOH . 
F 3 HOH A 52 652 27 HOH HOH . 
F 3 HOH A 53 653 28 HOH HOH . 
F 3 HOH A 54 654 29 HOH HOH . 
F 3 HOH A 55 655 31 HOH HOH . 
F 3 HOH A 56 656 32 HOH HOH . 
F 3 HOH A 57 657 33 HOH HOH . 
F 3 HOH A 58 658 34 HOH HOH . 
F 3 HOH A 59 659 35 HOH HOH . 
F 3 HOH A 60 660 36 HOH HOH . 
F 3 HOH A 61 661 37 HOH HOH . 
F 3 HOH A 62 662 38 HOH HOH . 
F 3 HOH A 63 663 41 HOH HOH . 
F 3 HOH A 64 664 42 HOH HOH . 
F 3 HOH A 65 665 43 HOH HOH . 
F 3 HOH A 66 666 44 HOH HOH . 
F 3 HOH A 67 667 46 HOH HOH . 
F 3 HOH A 68 668 51 HOH HOH . 
F 3 HOH A 69 669 53 HOH HOH . 
F 3 HOH A 70 670 54 HOH HOH . 
F 3 HOH A 71 671 55 HOH HOH . 
F 3 HOH A 72 672 56 HOH HOH . 
F 3 HOH A 73 673 57 HOH HOH . 
F 3 HOH A 74 674 58 HOH HOH . 
F 3 HOH A 75 675 60 HOH HOH . 
F 3 HOH A 76 676 62 HOH HOH . 
F 3 HOH A 77 677 65 HOH HOH . 
F 3 HOH A 78 678 66 HOH HOH . 
F 3 HOH A 79 679 69 HOH HOH . 
F 3 HOH A 80 680 70 HOH HOH . 
F 3 HOH A 81 681 72 HOH HOH . 
F 3 HOH A 82 682 74 HOH HOH . 
F 3 HOH A 83 683 76 HOH HOH . 
F 3 HOH A 84 684 77 HOH HOH . 
F 3 HOH A 85 685 78 HOH HOH . 
F 3 HOH A 86 686 80 HOH HOH . 
F 3 HOH A 87 687 82 HOH HOH . 
F 3 HOH A 88 688 83 HOH HOH . 
F 3 HOH A 89 689 84 HOH HOH . 
F 3 HOH A 90 690 87 HOH HOH . 
F 3 HOH A 91 691 88 HOH HOH . 
F 3 HOH A 92 692 89 HOH HOH . 
F 3 HOH A 93 693 90 HOH HOH . 
F 3 HOH A 94 694 92 HOH HOH . 
F 3 HOH A 95 695 94 HOH HOH . 
F 3 HOH A 96 696 95 HOH HOH . 
F 3 HOH A 97 697 101 HOH HOH . 
F 3 HOH A 98 698 103 HOH HOH . 
F 3 HOH A 99 699 104 HOH HOH . 
F 3 HOH A 100 700 105 HOH HOH . 
F 3 HOH A 101 701 107 HOH HOH . 
F 3 HOH A 102 702 108 HOH HOH . 
F 3 HOH A 103 703 110 HOH HOH . 
F 3 HOH A 104 704 111 HOH HOH . 
F 3 HOH A 105 705 113 HOH HOH . 
F 3 HOH A 106 706 114 HOH HOH . 
F 3 HOH A 107 707 115 HOH HOH . 
F 3 HOH A 108 708 116 HOH HOH . 
F 3 HOH A 109 709 117 HOH HOH . 
F 3 HOH A 110 710 119 HOH HOH . 
F 3 HOH A 111 711 122 HOH HOH . 
F 3 HOH A 112 712 123 HOH HOH . 
F 3 HOH A 113 713 124 HOH HOH . 
F 3 HOH A 114 714 126 HOH HOH . 
F 3 HOH A 115 715 127 HOH HOH . 
F 3 HOH A 116 716 129 HOH HOH . 
F 3 HOH A 117 717 131 HOH HOH . 
F 3 HOH A 118 718 133 HOH HOH . 
F 3 HOH A 119 719 134 HOH HOH . 
F 3 HOH A 120 720 135 HOH HOH . 
F 3 HOH A 121 721 136 HOH HOH . 
F 3 HOH A 122 722 137 HOH HOH . 
F 3 HOH A 123 723 140 HOH HOH . 
F 3 HOH A 124 724 141 HOH HOH . 
F 3 HOH A 125 725 143 HOH HOH . 
F 3 HOH A 126 726 144 HOH HOH . 
F 3 HOH A 127 727 148 HOH HOH . 
F 3 HOH A 128 728 151 HOH HOH . 
F 3 HOH A 129 729 152 HOH HOH . 
F 3 HOH A 130 730 153 HOH HOH . 
F 3 HOH A 131 731 154 HOH HOH . 
F 3 HOH A 132 732 156 HOH HOH . 
F 3 HOH A 133 733 157 HOH HOH . 
F 3 HOH A 134 734 159 HOH HOH . 
F 3 HOH A 135 735 162 HOH HOH . 
F 3 HOH A 136 736 164 HOH HOH . 
F 3 HOH A 137 737 166 HOH HOH . 
F 3 HOH A 138 738 167 HOH HOH . 
F 3 HOH A 139 739 170 HOH HOH . 
F 3 HOH A 140 740 171 HOH HOH . 
F 3 HOH A 141 741 174 HOH HOH . 
F 3 HOH A 142 742 178 HOH HOH . 
F 3 HOH A 143 743 179 HOH HOH . 
F 3 HOH A 144 744 182 HOH HOH . 
F 3 HOH A 145 745 183 HOH HOH . 
F 3 HOH A 146 746 185 HOH HOH . 
F 3 HOH A 147 747 188 HOH HOH . 
F 3 HOH A 148 748 189 HOH HOH . 
F 3 HOH A 149 749 193 HOH HOH . 
F 3 HOH A 150 750 194 HOH HOH . 
F 3 HOH A 151 751 195 HOH HOH . 
F 3 HOH A 152 752 197 HOH HOH . 
F 3 HOH A 153 753 198 HOH HOH . 
F 3 HOH A 154 754 201 HOH HOH . 
F 3 HOH A 155 755 202 HOH HOH . 
F 3 HOH A 156 756 203 HOH HOH . 
F 3 HOH A 157 757 204 HOH HOH . 
F 3 HOH A 158 758 207 HOH HOH . 
F 3 HOH A 159 759 212 HOH HOH . 
F 3 HOH A 160 760 215 HOH HOH . 
F 3 HOH A 161 761 219 HOH HOH . 
F 3 HOH A 162 762 220 HOH HOH . 
F 3 HOH A 163 763 221 HOH HOH . 
F 3 HOH A 164 764 223 HOH HOH . 
F 3 HOH A 165 765 224 HOH HOH . 
F 3 HOH A 166 766 225 HOH HOH . 
F 3 HOH A 167 767 226 HOH HOH . 
F 3 HOH A 168 768 227 HOH HOH . 
F 3 HOH A 169 769 228 HOH HOH . 
F 3 HOH A 170 770 233 HOH HOH . 
F 3 HOH A 171 771 234 HOH HOH . 
F 3 HOH A 172 772 236 HOH HOH . 
F 3 HOH A 173 773 239 HOH HOH . 
F 3 HOH A 174 774 240 HOH HOH . 
F 3 HOH A 175 775 241 HOH HOH . 
F 3 HOH A 176 776 244 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 -11.411 -16.385 -27.513 1 65.55 ? C1 GOL 504 A 1 
HETATM 2 O O1 GOL . . . E 2 -11.824 -17.443 -28.386 1 64.06 ? O1 GOL 504 A 1 
HETATM 3 C C2 GOL . . . E 2 -10.941 -16.951 -26.174 1 65.34 ? C2 GOL 504 A 1 
HETATM 4 O O2 GOL . . . E 2 -9.898 -17.905 -26.399 1 64.87 ? O2 GOL 504 A 1 
HETATM 5 C C3 GOL . . . E 2 -10.47 -15.824 -25.251 1 67.08 ? C3 GOL 504 A 1 
HETATM 6 O O3 GOL . . . E 2 -9.043 -15.814 -25.111 1 67.7 ? O3 GOL 504 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#