data_4Y2H # _model_server_result.job_id 7Qn8iOY6kjZN_j9CvHvbkA _model_server_result.datetime_utc '2024-10-17 07:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 4Y2H # _exptl.entry_id 4Y2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y2H _cell.length_a 99.97 _cell.length_b 99.97 _cell.length_c 89.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 165 n n C1 C2 GOL sing 166 n n C1 H11 GOL sing 167 n n C1 H12 GOL sing 168 n n O1 HO1 GOL sing 169 n n C2 O2 GOL sing 170 n n C2 C3 GOL sing 171 n n C2 H2 GOL sing 172 n n O2 HO2 GOL sing 173 n n C3 O3 GOL sing 174 n n C3 H31 GOL sing 175 n n C3 H32 GOL sing 176 n n O3 HO3 GOL sing 177 n n # _atom_sites.entry_id 4Y2H _atom_sites.fract_transf_matrix[1][1] 0.010003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 1 SAH SAH . D 3 49K A 1 402 1 49K EPZ . E 2 SAH B 1 401 2 SAH SAH . F 3 49K B 1 402 2 49K EPZ . G 4 GOL B 1 403 1 GOL GOL . H 5 HOH A 1 501 179 HOH HOH . H 5 HOH A 2 502 32 HOH HOH . H 5 HOH A 3 503 249 HOH HOH . H 5 HOH A 4 504 46 HOH HOH . H 5 HOH A 5 505 206 HOH HOH . H 5 HOH A 6 506 160 HOH HOH . H 5 HOH A 7 507 156 HOH HOH . H 5 HOH A 8 508 127 HOH HOH . H 5 HOH A 9 509 72 HOH HOH . H 5 HOH A 10 510 43 HOH HOH . H 5 HOH A 11 511 82 HOH HOH . H 5 HOH A 12 512 112 HOH HOH . H 5 HOH A 13 513 126 HOH HOH . H 5 HOH A 14 514 258 HOH HOH . H 5 HOH A 15 515 239 HOH HOH . H 5 HOH A 16 516 250 HOH HOH . H 5 HOH A 17 517 154 HOH HOH . H 5 HOH A 18 518 195 HOH HOH . H 5 HOH A 19 519 153 HOH HOH . H 5 HOH A 20 520 175 HOH HOH . H 5 HOH A 21 521 95 HOH HOH . H 5 HOH A 22 522 70 HOH HOH . H 5 HOH A 23 523 34 HOH HOH . H 5 HOH A 24 524 36 HOH HOH . H 5 HOH A 25 525 177 HOH HOH . H 5 HOH A 26 526 234 HOH HOH . H 5 HOH A 27 527 259 HOH HOH . H 5 HOH A 28 528 131 HOH HOH . H 5 HOH A 29 529 20 HOH HOH . H 5 HOH A 30 530 240 HOH HOH . H 5 HOH A 31 531 232 HOH HOH . H 5 HOH A 32 532 221 HOH HOH . H 5 HOH A 33 533 101 HOH HOH . H 5 HOH A 34 534 235 HOH HOH . H 5 HOH A 35 535 81 HOH HOH . H 5 HOH A 36 536 252 HOH HOH . H 5 HOH A 37 537 79 HOH HOH . H 5 HOH A 38 538 186 HOH HOH . H 5 HOH A 39 539 28 HOH HOH . H 5 HOH A 40 540 133 HOH HOH . H 5 HOH A 41 541 125 HOH HOH . H 5 HOH A 42 542 50 HOH HOH . H 5 HOH A 43 543 233 HOH HOH . H 5 HOH A 44 544 144 HOH HOH . H 5 HOH A 45 545 123 HOH HOH . H 5 HOH A 46 546 246 HOH HOH . H 5 HOH A 47 547 132 HOH HOH . H 5 HOH A 48 548 113 HOH HOH . H 5 HOH A 49 549 118 HOH HOH . H 5 HOH A 50 550 137 HOH HOH . H 5 HOH A 51 551 198 HOH HOH . H 5 HOH A 52 552 254 HOH HOH . H 5 HOH A 53 553 129 HOH HOH . H 5 HOH A 54 554 1 HOH HOH . H 5 HOH A 55 555 3 HOH HOH . H 5 HOH A 56 556 5 HOH HOH . H 5 HOH A 57 557 6 HOH HOH . H 5 HOH A 58 558 8 HOH HOH . H 5 HOH A 59 559 9 HOH HOH . H 5 HOH A 60 560 12 HOH HOH . H 5 HOH A 61 561 16 HOH HOH . H 5 HOH A 62 562 18 HOH HOH . H 5 HOH A 63 563 21 HOH HOH . H 5 HOH A 64 564 23 HOH HOH . H 5 HOH A 65 565 24 HOH HOH . H 5 HOH A 66 566 25 HOH HOH . H 5 HOH A 67 567 27 HOH HOH . H 5 HOH A 68 568 29 HOH HOH . H 5 HOH A 69 569 30 HOH HOH . H 5 HOH A 70 570 33 HOH HOH . H 5 HOH A 71 571 37 HOH HOH . H 5 HOH A 72 572 38 HOH HOH . H 5 HOH A 73 573 44 HOH HOH . H 5 HOH A 74 574 45 HOH HOH . H 5 HOH A 75 575 47 HOH HOH . H 5 HOH A 76 576 53 HOH HOH . H 5 HOH A 77 577 55 HOH HOH . H 5 HOH A 78 578 57 HOH HOH . H 5 HOH A 79 579 58 HOH HOH . H 5 HOH A 80 580 59 HOH HOH . H 5 HOH A 81 581 62 HOH HOH . H 5 HOH A 82 582 63 HOH HOH . H 5 HOH A 83 583 65 HOH HOH . H 5 HOH A 84 584 66 HOH HOH . H 5 HOH A 85 585 68 HOH HOH . H 5 HOH A 86 586 71 HOH HOH . H 5 HOH A 87 587 73 HOH HOH . H 5 HOH A 88 588 74 HOH HOH . H 5 HOH A 89 589 83 HOH HOH . H 5 HOH A 90 590 90 HOH HOH . H 5 HOH A 91 591 98 HOH HOH . H 5 HOH A 92 592 109 HOH HOH . H 5 HOH A 93 593 111 HOH HOH . H 5 HOH A 94 594 114 HOH HOH . H 5 HOH A 95 595 115 HOH HOH . H 5 HOH A 96 596 116 HOH HOH . H 5 HOH A 97 597 117 HOH HOH . H 5 HOH A 98 598 119 HOH HOH . H 5 HOH A 99 599 120 HOH HOH . H 5 HOH A 100 600 130 HOH HOH . H 5 HOH A 101 601 143 HOH HOH . H 5 HOH A 102 602 147 HOH HOH . H 5 HOH A 103 603 151 HOH HOH . H 5 HOH A 104 604 152 HOH HOH . H 5 HOH A 105 605 157 HOH HOH . H 5 HOH A 106 606 161 HOH HOH . H 5 HOH A 107 607 162 HOH HOH . H 5 HOH A 108 608 166 HOH HOH . H 5 HOH A 109 609 168 HOH HOH . H 5 HOH A 110 610 172 HOH HOH . H 5 HOH A 111 611 173 HOH HOH . H 5 HOH A 112 612 174 HOH HOH . H 5 HOH A 113 613 182 HOH HOH . H 5 HOH A 114 614 183 HOH HOH . H 5 HOH A 115 615 187 HOH HOH . H 5 HOH A 116 616 193 HOH HOH . H 5 HOH A 117 617 196 HOH HOH . H 5 HOH A 118 618 197 HOH HOH . H 5 HOH A 119 619 203 HOH HOH . H 5 HOH A 120 620 207 HOH HOH . H 5 HOH A 121 621 208 HOH HOH . H 5 HOH A 122 622 209 HOH HOH . H 5 HOH A 123 623 211 HOH HOH . H 5 HOH A 124 624 215 HOH HOH . H 5 HOH A 125 625 216 HOH HOH . H 5 HOH A 126 626 218 HOH HOH . H 5 HOH A 127 627 223 HOH HOH . H 5 HOH A 128 628 224 HOH HOH . H 5 HOH A 129 629 227 HOH HOH . H 5 HOH A 130 630 228 HOH HOH . H 5 HOH A 131 631 236 HOH HOH . H 5 HOH A 132 632 244 HOH HOH . H 5 HOH A 133 633 245 HOH HOH . H 5 HOH A 134 634 248 HOH HOH . H 5 HOH A 135 635 251 HOH HOH . H 5 HOH A 136 636 253 HOH HOH . H 5 HOH A 137 637 255 HOH HOH . H 5 HOH A 138 638 256 HOH HOH . H 5 HOH A 139 639 257 HOH HOH . I 5 HOH B 1 501 238 HOH HOH . I 5 HOH B 2 502 261 HOH HOH . I 5 HOH B 3 503 167 HOH HOH . I 5 HOH B 4 504 205 HOH HOH . I 5 HOH B 5 505 217 HOH HOH . I 5 HOH B 6 506 99 HOH HOH . I 5 HOH B 7 507 124 HOH HOH . I 5 HOH B 8 508 48 HOH HOH . I 5 HOH B 9 509 230 HOH HOH . I 5 HOH B 10 510 106 HOH HOH . I 5 HOH B 11 511 222 HOH HOH . I 5 HOH B 12 512 242 HOH HOH . I 5 HOH B 13 513 78 HOH HOH . I 5 HOH B 14 514 213 HOH HOH . I 5 HOH B 15 515 148 HOH HOH . I 5 HOH B 16 516 139 HOH HOH . I 5 HOH B 17 517 85 HOH HOH . I 5 HOH B 18 518 262 HOH HOH . I 5 HOH B 19 519 188 HOH HOH . I 5 HOH B 20 520 86 HOH HOH . I 5 HOH B 21 521 135 HOH HOH . I 5 HOH B 22 522 52 HOH HOH . I 5 HOH B 23 523 138 HOH HOH . I 5 HOH B 24 524 2 HOH HOH . I 5 HOH B 25 525 4 HOH HOH . I 5 HOH B 26 526 7 HOH HOH . I 5 HOH B 27 527 10 HOH HOH . I 5 HOH B 28 528 11 HOH HOH . I 5 HOH B 29 529 13 HOH HOH . I 5 HOH B 30 530 14 HOH HOH . I 5 HOH B 31 531 15 HOH HOH . I 5 HOH B 32 532 17 HOH HOH . I 5 HOH B 33 533 19 HOH HOH . I 5 HOH B 34 534 22 HOH HOH . I 5 HOH B 35 535 26 HOH HOH . I 5 HOH B 36 536 31 HOH HOH . I 5 HOH B 37 537 35 HOH HOH . I 5 HOH B 38 538 39 HOH HOH . I 5 HOH B 39 539 40 HOH HOH . I 5 HOH B 40 540 41 HOH HOH . I 5 HOH B 41 541 42 HOH HOH . I 5 HOH B 42 542 49 HOH HOH . I 5 HOH B 43 543 51 HOH HOH . I 5 HOH B 44 544 54 HOH HOH . I 5 HOH B 45 545 56 HOH HOH . I 5 HOH B 46 546 60 HOH HOH . I 5 HOH B 47 547 61 HOH HOH . I 5 HOH B 48 548 64 HOH HOH . I 5 HOH B 49 549 67 HOH HOH . I 5 HOH B 50 550 69 HOH HOH . I 5 HOH B 51 551 75 HOH HOH . I 5 HOH B 52 552 76 HOH HOH . I 5 HOH B 53 553 77 HOH HOH . I 5 HOH B 54 554 80 HOH HOH . I 5 HOH B 55 555 84 HOH HOH . I 5 HOH B 56 556 87 HOH HOH . I 5 HOH B 57 557 88 HOH HOH . I 5 HOH B 58 558 89 HOH HOH . I 5 HOH B 59 559 91 HOH HOH . I 5 HOH B 60 560 92 HOH HOH . I 5 HOH B 61 561 93 HOH HOH . I 5 HOH B 62 562 94 HOH HOH . I 5 HOH B 63 563 96 HOH HOH . I 5 HOH B 64 564 97 HOH HOH . I 5 HOH B 65 565 100 HOH HOH . I 5 HOH B 66 566 102 HOH HOH . I 5 HOH B 67 567 103 HOH HOH . I 5 HOH B 68 568 104 HOH HOH . I 5 HOH B 69 569 105 HOH HOH . I 5 HOH B 70 570 107 HOH HOH . I 5 HOH B 71 571 108 HOH HOH . I 5 HOH B 72 572 110 HOH HOH . I 5 HOH B 73 573 121 HOH HOH . I 5 HOH B 74 574 122 HOH HOH . I 5 HOH B 75 575 128 HOH HOH . I 5 HOH B 76 576 134 HOH HOH . I 5 HOH B 77 577 136 HOH HOH . I 5 HOH B 78 578 140 HOH HOH . I 5 HOH B 79 579 141 HOH HOH . I 5 HOH B 80 580 142 HOH HOH . I 5 HOH B 81 581 145 HOH HOH . I 5 HOH B 82 582 146 HOH HOH . I 5 HOH B 83 583 149 HOH HOH . I 5 HOH B 84 584 150 HOH HOH . I 5 HOH B 85 585 155 HOH HOH . I 5 HOH B 86 586 158 HOH HOH . I 5 HOH B 87 587 159 HOH HOH . I 5 HOH B 88 588 163 HOH HOH . I 5 HOH B 89 589 164 HOH HOH . I 5 HOH B 90 590 165 HOH HOH . I 5 HOH B 91 591 169 HOH HOH . I 5 HOH B 92 592 170 HOH HOH . I 5 HOH B 93 593 171 HOH HOH . I 5 HOH B 94 594 176 HOH HOH . I 5 HOH B 95 595 178 HOH HOH . I 5 HOH B 96 596 180 HOH HOH . I 5 HOH B 97 597 181 HOH HOH . I 5 HOH B 98 598 184 HOH HOH . I 5 HOH B 99 599 185 HOH HOH . I 5 HOH B 100 600 189 HOH HOH . I 5 HOH B 101 601 190 HOH HOH . I 5 HOH B 102 602 191 HOH HOH . I 5 HOH B 103 603 192 HOH HOH . I 5 HOH B 104 604 194 HOH HOH . I 5 HOH B 105 605 199 HOH HOH . I 5 HOH B 106 606 200 HOH HOH . I 5 HOH B 107 607 201 HOH HOH . I 5 HOH B 108 608 202 HOH HOH . I 5 HOH B 109 609 204 HOH HOH . I 5 HOH B 110 610 210 HOH HOH . I 5 HOH B 111 611 212 HOH HOH . I 5 HOH B 112 612 214 HOH HOH . I 5 HOH B 113 613 219 HOH HOH . I 5 HOH B 114 614 220 HOH HOH . I 5 HOH B 115 615 225 HOH HOH . I 5 HOH B 116 616 226 HOH HOH . I 5 HOH B 117 617 229 HOH HOH . I 5 HOH B 118 618 231 HOH HOH . I 5 HOH B 119 619 237 HOH HOH . I 5 HOH B 120 620 241 HOH HOH . I 5 HOH B 121 621 243 HOH HOH . I 5 HOH B 122 622 247 HOH HOH . I 5 HOH B 123 623 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 28.903 -3.305 32.141 1 24.28 ? C1 GOL 403 B 1 HETATM 2 O O1 GOL . . . G 4 27.985 -3.015 33.201 1 22.69 ? O1 GOL 403 B 1 HETATM 3 C C2 GOL . . . G 4 28.442 -4.549 31.407 1 25.32 ? C2 GOL 403 B 1 HETATM 4 O O2 GOL . . . G 4 27.24 -4.283 30.668 1 26.05 ? O2 GOL 403 B 1 HETATM 5 C C3 GOL . . . G 4 29.515 -4.99 30.444 1 26.48 ? C3 GOL 403 B 1 HETATM 6 O O3 GOL . . . G 4 28.892 -5.926 29.553 1 30.8 ? O3 GOL 403 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #