data_4Y2N # _model_server_result.job_id kTngwbXyuDNpv-KJwJAH3A _model_server_result.datetime_utc '2024-11-14 09:04:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y2n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 4Y2N # _exptl.entry_id 4Y2N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y2N _cell.length_a 114.723 _cell.length_b 114.723 _cell.length_c 67.081 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y2N _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I 1 1,2,4 C,J 2 1,3,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 57.3615 -99.353032 0 3 'crystal symmetry operation' 2_645 -y+1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 172.0845 -99.353032 0 4 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 114.723 0 0 5 'crystal symmetry operation' 3_765 -x+y+2,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 172.0845 99.353032 0 6 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 172.0845 -99.353032 0 7 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 172.0845 99.353032 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 4Y2N _atom_sites.fract_transf_matrix[1][1] 0.008717 _atom_sites.fract_transf_matrix[1][2] 0.005033 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG B 1 201 1 MG MG . E 3 EDO B 1 202 1 EDO PGE . F 2 MG B 1 203 1 MG MG . G 2 MG B 1 204 1 MG MG . H 4 HOH B 1 301 43 HOH HOH . H 4 HOH B 2 302 3 HOH HOH . H 4 HOH B 3 303 11 HOH HOH . H 4 HOH B 4 304 33 HOH HOH . H 4 HOH B 5 305 8 HOH HOH . H 4 HOH B 6 306 111 HOH HOH . H 4 HOH B 7 307 13 HOH HOH . H 4 HOH B 8 308 113 HOH HOH . H 4 HOH B 9 309 88 HOH HOH . H 4 HOH B 10 310 32 HOH HOH . H 4 HOH B 11 311 22 HOH HOH . H 4 HOH B 12 312 14 HOH HOH . H 4 HOH B 13 313 96 HOH HOH . H 4 HOH B 14 314 105 HOH HOH . H 4 HOH B 15 315 49 HOH HOH . H 4 HOH B 16 316 163 HOH HOH . H 4 HOH B 17 317 28 HOH HOH . H 4 HOH B 18 318 173 HOH HOH . H 4 HOH B 19 319 135 HOH HOH . H 4 HOH B 20 320 95 HOH HOH . H 4 HOH B 21 321 100 HOH HOH . H 4 HOH B 22 322 136 HOH HOH . H 4 HOH B 23 323 89 HOH HOH . H 4 HOH B 24 324 64 HOH HOH . H 4 HOH B 25 325 5 HOH HOH . H 4 HOH B 26 326 6 HOH HOH . H 4 HOH B 27 327 12 HOH HOH . H 4 HOH B 28 328 17 HOH HOH . H 4 HOH B 29 329 18 HOH HOH . H 4 HOH B 30 330 24 HOH HOH . H 4 HOH B 31 331 25 HOH HOH . H 4 HOH B 32 332 30 HOH HOH . H 4 HOH B 33 333 36 HOH HOH . H 4 HOH B 34 334 44 HOH HOH . H 4 HOH B 35 335 46 HOH HOH . H 4 HOH B 36 336 47 HOH HOH . H 4 HOH B 37 337 50 HOH HOH . H 4 HOH B 38 338 51 HOH HOH . H 4 HOH B 39 339 60 HOH HOH . H 4 HOH B 40 340 61 HOH HOH . H 4 HOH B 41 341 62 HOH HOH . H 4 HOH B 42 342 63 HOH HOH . H 4 HOH B 43 343 65 HOH HOH . H 4 HOH B 44 344 66 HOH HOH . H 4 HOH B 45 345 69 HOH HOH . H 4 HOH B 46 346 71 HOH HOH . H 4 HOH B 47 347 81 HOH HOH . H 4 HOH B 48 348 85 HOH HOH . H 4 HOH B 49 349 92 HOH HOH . H 4 HOH B 50 350 93 HOH HOH . H 4 HOH B 51 351 97 HOH HOH . H 4 HOH B 52 352 98 HOH HOH . H 4 HOH B 53 353 99 HOH HOH . H 4 HOH B 54 354 108 HOH HOH . H 4 HOH B 55 355 109 HOH HOH . H 4 HOH B 56 356 110 HOH HOH . H 4 HOH B 57 357 115 HOH HOH . H 4 HOH B 58 358 116 HOH HOH . H 4 HOH B 59 359 117 HOH HOH . H 4 HOH B 60 360 138 HOH HOH . H 4 HOH B 61 361 142 HOH HOH . H 4 HOH B 62 362 145 HOH HOH . H 4 HOH B 63 363 146 HOH HOH . H 4 HOH B 64 364 153 HOH HOH . H 4 HOH B 65 365 158 HOH HOH . H 4 HOH B 66 366 165 HOH HOH . H 4 HOH B 67 367 169 HOH HOH . H 4 HOH B 68 368 171 HOH HOH . H 4 HOH B 69 369 172 HOH HOH . I 4 HOH A 1 201 52 HOH HOH . I 4 HOH A 2 202 103 HOH HOH . I 4 HOH A 3 203 104 HOH HOH . I 4 HOH A 4 204 4 HOH HOH . I 4 HOH A 5 205 125 HOH HOH . I 4 HOH A 6 206 140 HOH HOH . I 4 HOH A 7 207 86 HOH HOH . I 4 HOH A 8 208 42 HOH HOH . I 4 HOH A 9 209 87 HOH HOH . I 4 HOH A 10 210 118 HOH HOH . I 4 HOH A 11 211 131 HOH HOH . I 4 HOH A 12 212 127 HOH HOH . I 4 HOH A 13 213 9 HOH HOH . I 4 HOH A 14 214 16 HOH HOH . I 4 HOH A 15 215 27 HOH HOH . I 4 HOH A 16 216 29 HOH HOH . I 4 HOH A 17 217 31 HOH HOH . I 4 HOH A 18 218 37 HOH HOH . I 4 HOH A 19 219 38 HOH HOH . I 4 HOH A 20 220 48 HOH HOH . I 4 HOH A 21 221 53 HOH HOH . I 4 HOH A 22 222 54 HOH HOH . I 4 HOH A 23 223 55 HOH HOH . I 4 HOH A 24 224 56 HOH HOH . I 4 HOH A 25 225 57 HOH HOH . I 4 HOH A 26 226 67 HOH HOH . I 4 HOH A 27 227 72 HOH HOH . I 4 HOH A 28 228 73 HOH HOH . I 4 HOH A 29 229 74 HOH HOH . I 4 HOH A 30 230 75 HOH HOH . I 4 HOH A 31 231 76 HOH HOH . I 4 HOH A 32 232 77 HOH HOH . I 4 HOH A 33 233 82 HOH HOH . I 4 HOH A 34 234 102 HOH HOH . I 4 HOH A 35 235 112 HOH HOH . I 4 HOH A 36 236 114 HOH HOH . I 4 HOH A 37 237 120 HOH HOH . I 4 HOH A 38 238 121 HOH HOH . I 4 HOH A 39 239 123 HOH HOH . I 4 HOH A 40 240 128 HOH HOH . I 4 HOH A 41 241 132 HOH HOH . I 4 HOH A 42 242 133 HOH HOH . I 4 HOH A 43 243 134 HOH HOH . I 4 HOH A 44 244 141 HOH HOH . I 4 HOH A 45 245 147 HOH HOH . I 4 HOH A 46 246 148 HOH HOH . I 4 HOH A 47 247 155 HOH HOH . I 4 HOH A 48 248 157 HOH HOH . I 4 HOH A 49 249 159 HOH HOH . I 4 HOH A 50 250 160 HOH HOH . I 4 HOH A 51 251 161 HOH HOH . I 4 HOH A 52 252 162 HOH HOH . I 4 HOH A 53 253 166 HOH HOH . I 4 HOH A 54 254 170 HOH HOH . J 4 HOH C 1 201 119 HOH HOH . J 4 HOH C 2 202 15 HOH HOH . J 4 HOH C 3 203 59 HOH HOH . J 4 HOH C 4 204 129 HOH HOH . J 4 HOH C 5 205 139 HOH HOH . J 4 HOH C 6 206 149 HOH HOH . J 4 HOH C 7 207 39 HOH HOH . J 4 HOH C 8 208 94 HOH HOH . J 4 HOH C 9 209 91 HOH HOH . J 4 HOH C 10 210 156 HOH HOH . J 4 HOH C 11 211 68 HOH HOH . J 4 HOH C 12 212 70 HOH HOH . J 4 HOH C 13 213 83 HOH HOH . J 4 HOH C 14 214 10 HOH HOH . J 4 HOH C 15 215 40 HOH HOH . J 4 HOH C 16 216 78 HOH HOH . J 4 HOH C 17 217 79 HOH HOH . J 4 HOH C 18 218 80 HOH HOH . J 4 HOH C 19 219 84 HOH HOH . J 4 HOH C 20 220 90 HOH HOH . J 4 HOH C 21 221 101 HOH HOH . J 4 HOH C 22 222 106 HOH HOH . J 4 HOH C 23 223 107 HOH HOH . J 4 HOH C 24 224 122 HOH HOH . J 4 HOH C 25 225 124 HOH HOH . J 4 HOH C 26 226 126 HOH HOH . J 4 HOH C 27 227 130 HOH HOH . J 4 HOH C 28 228 137 HOH HOH . J 4 HOH C 29 229 143 HOH HOH . J 4 HOH C 30 230 144 HOH HOH . J 4 HOH C 31 231 150 HOH HOH . J 4 HOH C 32 232 151 HOH HOH . J 4 HOH C 33 233 152 HOH HOH . J 4 HOH C 34 234 154 HOH HOH . J 4 HOH C 35 235 164 HOH HOH . J 4 HOH C 36 236 167 HOH HOH . J 4 HOH C 37 237 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 46.073 -26.15 10.076 1 47.65 ? C1 EDO 202 B 1 HETATM 2 O O1 EDO . . . E 3 46.596 -27.296 9.425 1 51.43 ? O1 EDO 202 B 1 HETATM 3 C C2 EDO . . . E 3 44.612 -26.507 10.354 1 56.38 ? C2 EDO 202 B 1 HETATM 4 O O2 EDO . . . E 3 43.732 -25.44 10.022 1 56.49 ? O2 EDO 202 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #