data_4Y2T # _model_server_result.job_id d8xq-tzdmhHNa25fmtCyrw _model_server_result.datetime_utc '2024-10-18 14:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4Y2T # _exptl.entry_id 4Y2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 242.313 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[4-(benzyloxy)phenyl]propan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y2T _cell.length_a 92.373 _cell.length_b 92.373 _cell.length_c 244.194 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.373 0 122.097 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C16 H18 O2' _chem_comp.formula_weight 242.313 _chem_comp.id 49Q _chem_comp.mon_nstd_flag . _chem_comp.name 3-[4-(benzyloxy)phenyl]propan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C14 49Q doub 1 n y C17 C15 49Q sing 2 n y C14 C11 49Q sing 3 n y C15 C12 49Q doub 4 n y C11 C9 49Q doub 5 n y C12 C9 49Q sing 6 n y C9 C7 49Q sing 7 n n O4 C7 49Q sing 8 n n O4 C1 49Q sing 9 n n C2 C1 49Q doub 10 n y C2 C5 49Q sing 11 n y C1 C3 49Q sing 12 n y C5 C8 49Q doub 13 n y C3 C6 49Q doub 14 n y C8 C6 49Q sing 15 n y C8 C10 49Q sing 16 n n C10 C13 49Q sing 17 n n C16 C13 49Q sing 18 n n C16 O18 49Q sing 19 n n C17 H1 49Q sing 20 n n C14 H2 49Q sing 21 n n C15 H3 49Q sing 22 n n C11 H4 49Q sing 23 n n C12 H5 49Q sing 24 n n C5 H6 49Q sing 25 n n C6 H7 49Q sing 26 n n C2 H8 49Q sing 27 n n C3 H9 49Q sing 28 n n C10 H10 49Q sing 29 n n C10 H11 49Q sing 30 n n C7 H12 49Q sing 31 n n C7 H13 49Q sing 32 n n C13 H14 49Q sing 33 n n C13 H15 49Q sing 34 n n C16 H16 49Q sing 35 n n C16 H17 49Q sing 36 n n O18 H18 49Q sing 37 n n # _atom_sites.entry_id 4Y2T _atom_sites.fract_transf_matrix[1][1] 0.010826 _atom_sites.fract_transf_matrix[1][2] 0.00625 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 782 MG MG . C 3 49Q A 1 602 1 49Q UNL . D 4 HOH A 1 701 30 HOH HOH . D 4 HOH A 2 702 7 HOH HOH . D 4 HOH A 3 703 21 HOH HOH . D 4 HOH A 4 704 15 HOH HOH . D 4 HOH A 5 705 2 HOH HOH . D 4 HOH A 6 706 33 HOH HOH . D 4 HOH A 7 707 41 HOH HOH . D 4 HOH A 8 708 17 HOH HOH . D 4 HOH A 9 709 29 HOH HOH . D 4 HOH A 10 710 39 HOH HOH . D 4 HOH A 11 711 40 HOH HOH . D 4 HOH A 12 712 1 HOH HOH . D 4 HOH A 13 713 3 HOH HOH . D 4 HOH A 14 714 4 HOH HOH . D 4 HOH A 15 715 5 HOH HOH . D 4 HOH A 16 716 6 HOH HOH . D 4 HOH A 17 717 8 HOH HOH . D 4 HOH A 18 718 9 HOH HOH . D 4 HOH A 19 719 10 HOH HOH . D 4 HOH A 20 720 11 HOH HOH . D 4 HOH A 21 721 12 HOH HOH . D 4 HOH A 22 722 13 HOH HOH . D 4 HOH A 23 723 14 HOH HOH . D 4 HOH A 24 724 16 HOH HOH . D 4 HOH A 25 725 18 HOH HOH . D 4 HOH A 26 726 19 HOH HOH . D 4 HOH A 27 727 20 HOH HOH . D 4 HOH A 28 728 22 HOH HOH . D 4 HOH A 29 729 23 HOH HOH . D 4 HOH A 30 730 24 HOH HOH . D 4 HOH A 31 731 25 HOH HOH . D 4 HOH A 32 732 26 HOH HOH . D 4 HOH A 33 733 27 HOH HOH . D 4 HOH A 34 734 28 HOH HOH . D 4 HOH A 35 735 31 HOH HOH . D 4 HOH A 36 736 32 HOH HOH . D 4 HOH A 37 737 34 HOH HOH . D 4 HOH A 38 738 35 HOH HOH . D 4 HOH A 39 739 36 HOH HOH . D 4 HOH A 40 740 37 HOH HOH . D 4 HOH A 41 741 38 HOH HOH . D 4 HOH A 42 742 42 HOH HOH . D 4 HOH A 43 743 43 HOH HOH . D 4 HOH A 44 744 44 HOH HOH . D 4 HOH A 45 745 45 HOH HOH . D 4 HOH A 46 746 46 HOH HOH . D 4 HOH A 47 747 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 49Q . . . C 3 -11.072 -5.016 55.669 1 48.63 ? C17 49Q 602 A 1 HETATM 2 C C14 49Q . . . C 3 -12.073 -5.97 55.669 1 50.73 ? C14 49Q 602 A 1 HETATM 3 C C15 49Q . . . C 3 -10.695 -4.406 56.848 1 46.82 ? C15 49Q 602 A 1 HETATM 4 C C11 49Q . . . C 3 -12.682 -6.3 56.859 1 46.85 ? C11 49Q 602 A 1 HETATM 5 C C12 49Q . . . C 3 -11.294 -4.746 58.041 1 48.62 ? C12 49Q 602 A 1 HETATM 6 C C5 49Q . . . C 3 -17.442 -6.531 60.577 1 33.47 ? C5 49Q 602 A 1 HETATM 7 C C6 49Q . . . C 3 -16.171 -4.947 61.884 1 31.63 ? C6 49Q 602 A 1 HETATM 8 C C2 49Q . . . C 3 -16.396 -6.531 59.678 1 39.33 ? C2 49Q 602 A 1 HETATM 9 C C3 49Q . . . C 3 -15.12 -4.937 60.987 1 32 ? C3 49Q 602 A 1 HETATM 10 C C8 49Q . . . C 3 -17.309 -5.725 61.681 1 31.58 ? C8 49Q 602 A 1 HETATM 11 C C9 49Q . . . C 3 -12.287 -5.701 58.042 1 49.77 ? C9 49Q 602 A 1 HETATM 12 C C1 49Q . . . C 3 -15.27 -5.758 59.89 1 37.82 ? C1 49Q 602 A 1 HETATM 13 C C10 49Q . . . C 3 -18.422 -5.728 62.64 1 28.77 ? C10 49Q 602 A 1 HETATM 14 C C7 49Q . . . C 3 -12.983 -6.07 59.309 1 49.79 ? C7 49Q 602 A 1 HETATM 15 C C13 49Q . . . C 3 -17.976 -6.622 63.773 1 31.72 ? C13 49Q 602 A 1 HETATM 16 C C16 49Q . . . C 3 -18.175 -8.09 63.523 1 29 ? C16 49Q 602 A 1 HETATM 17 O O18 49Q . . . C 3 -17.815 -8.696 64.766 1 28.86 ? O18 49Q 602 A 1 HETATM 18 O O4 49Q . . . C 3 -14.339 -5.862 58.892 1 44.28 ? O4 49Q 602 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #