data_4Y2X # _model_server_result.job_id kTr8BilHx5T8rRu3mmr9TQ _model_server_result.datetime_utc '2024-10-18 16:31:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4Y2X # _exptl.entry_id 4Y2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[({2-[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-yl]ethyl}amino)methyl]phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y2X _cell.length_a 92.731 _cell.length_b 92.731 _cell.length_c 243.251 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.731 0 121.6255 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? # _chem_comp.formula 'C19 H27 N O' _chem_comp.formula_weight 285.424 _chem_comp.id 4A0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[({2-[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-yl]ethyl}amino)methyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C18 4A0 doub 1 n y C21 C20 4A0 sing 2 n y C18 C9 4A0 sing 3 n y C20 C17 4A0 doub 4 n y C9 O14 4A0 sing 5 n n C9 C5 4A0 doub 6 n y C17 C5 4A0 sing 7 n y C5 C16 4A0 sing 8 n n C16 N13 4A0 sing 9 n n N13 C19 4A0 sing 10 n n C19 C15 4A0 sing 11 n n C15 C1 4A0 sing 12 n n C7 C1 4A0 sing 13 n n C7 C3 4A0 sing 14 n n C1 C8 4A0 sing 15 n n C1 C6 4A0 sing 16 n n C3 C12 4A0 sing 17 n n C3 C11 4A0 sing 18 n n C8 C4 4A0 sing 19 n n C12 C4 4A0 sing 20 n n C6 C2 4A0 sing 21 n n C11 C2 4A0 sing 22 n n C4 C10 4A0 sing 23 n n C2 C10 4A0 sing 24 n n C20 H1 4A0 sing 25 n n C21 H2 4A0 sing 26 n n C17 H3 4A0 sing 27 n n C18 H4 4A0 sing 28 n n C10 H5 4A0 sing 29 n n C10 H6 4A0 sing 30 n n C11 H7 4A0 sing 31 n n C11 H8 4A0 sing 32 n n C12 H9 4A0 sing 33 n n C12 H10 4A0 sing 34 n n C6 H11 4A0 sing 35 n n C6 H12 4A0 sing 36 n n C8 H13 4A0 sing 37 n n C8 H14 4A0 sing 38 n n C7 H15 4A0 sing 39 n n C7 H16 4A0 sing 40 n n C2 H17 4A0 sing 41 n n C4 H18 4A0 sing 42 n n C3 H19 4A0 sing 43 n n C16 H20 4A0 sing 44 n n C16 H21 4A0 sing 45 n n C15 H22 4A0 sing 46 n n C15 H23 4A0 sing 47 n n C19 H24 4A0 sing 48 n n C19 H25 4A0 sing 49 n n N13 H26 4A0 sing 50 n n O14 H28 4A0 sing 51 n n # _atom_sites.entry_id 4Y2X _atom_sites.fract_transf_matrix[1][1] 0.010784 _atom_sites.fract_transf_matrix[1][2] 0.006226 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 782 MG MG . C 3 4A0 A 1 602 1 4A0 UNL . D 4 HOH A 1 701 6 HOH HOH . D 4 HOH A 2 702 7 HOH HOH . D 4 HOH A 3 703 5 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 2 HOH HOH . D 4 HOH A 6 706 1 HOH HOH . D 4 HOH A 7 707 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 4A0 . . . C 3 -18.686 -5.28 61.99 1 36.33 ? C20 4A0 602 A 1 HETATM 2 C C21 4A0 . . . C 3 -18.492 -6.147 60.938 1 38.8 ? C21 4A0 602 A 1 HETATM 3 C C17 4A0 . . . C 3 -18.195 -5.554 63.238 1 36.22 ? C17 4A0 602 A 1 HETATM 4 C C18 4A0 . . . C 3 -17.802 -7.323 61.133 1 39.14 ? C18 4A0 602 A 1 HETATM 5 C C5 4A0 . . . C 3 -17.496 -6.715 63.449 1 39.81 ? C5 4A0 602 A 1 HETATM 6 C C9 4A0 . . . C 3 -17.316 -7.588 62.391 1 42.08 ? C9 4A0 602 A 1 HETATM 7 C C10 4A0 . . . C 3 -17.833 -11.898 70.577 1 35.89 ? C10 4A0 602 A 1 HETATM 8 C C11 4A0 . . . C 3 -15.706 -11.959 69.348 1 35.34 ? C11 4A0 602 A 1 HETATM 9 C C12 4A0 . . . C 3 -17.598 -13.48 68.722 1 35.46 ? C12 4A0 602 A 1 HETATM 10 C C6 4A0 . . . C 3 -17.19 -9.994 69.036 1 36.18 ? C6 4A0 602 A 1 HETATM 11 C C8 4A0 . . . C 3 -19.008 -11.482 68.41 1 35.64 ? C8 4A0 602 A 1 HETATM 12 C C7 4A0 . . . C 3 -16.897 -11.671 67.167 1 34.02 ? C7 4A0 602 A 1 HETATM 13 C C2 4A0 . . . C 3 -16.693 -11.04 70.04 1 38.92 ? C2 4A0 602 A 1 HETATM 14 C C4 4A0 . . . C 3 -18.559 -12.545 69.411 1 35.93 ? C4 4A0 602 A 1 HETATM 15 C C3 4A0 . . . C 3 -16.409 -12.683 68.196 1 37.24 ? C3 4A0 602 A 1 HETATM 16 C C1 4A0 . . . C 3 -17.83 -10.701 67.849 1 35.44 ? C1 4A0 602 A 1 HETATM 17 C C16 4A0 . . . C 3 -16.967 -7.016 64.811 1 36.54 ? C16 4A0 602 A 1 HETATM 18 C C15 4A0 . . . C 3 -18.294 -9.736 66.786 1 38.4 ? C15 4A0 602 A 1 HETATM 19 C C19 4A0 . . . C 3 -17.454 -8.485 66.579 1 37.11 ? C19 4A0 602 A 1 HETATM 20 N N13 4A0 . . . C 3 -17.506 -8.306 65.152 1 34.45 ? N13 4A0 602 A 1 HETATM 21 O O14 4A0 . . . C 3 -16.617 -8.763 62.584 1 49.09 ? O14 4A0 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #