data_4Y2Y # _model_server_result.job_id T5IJFo0p3V3WPGXVo_kdKQ _model_server_result.datetime_utc '2024-11-22 10:51:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4Y2Y # _exptl.entry_id 4Y2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 249.347 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-fluorophenyl)-N-[(5-methylthiophen-2-yl)methyl]ethanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y2Y _cell.length_a 92.673 _cell.length_b 92.673 _cell.length_c 243.751 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.673 0 121.8755 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc2 A O ASP 11 A ASP 11 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc3 A OD1 ASP 185 A ASP 185 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'C14 H16 F N S' _chem_comp.formula_weight 249.347 _chem_comp.id 49Z _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-fluorophenyl)-N-[(5-methylthiophen-2-yl)methyl]ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C3 49Z sing 1 n n C3 C4 49Z doub 2 n y C3 S1 49Z sing 3 n y C4 C5 49Z sing 4 n y C5 C2 49Z doub 5 n y S1 C2 49Z sing 6 n y C2 C10 49Z sing 7 n n C10 N9 49Z sing 8 n n N9 C15 49Z sing 9 n n C15 C12 49Z sing 10 n n C12 C7 49Z sing 11 n n C14 C7 49Z doub 12 n y C14 C16 49Z sing 13 n y C7 C6 49Z sing 14 n y C16 C17 49Z doub 15 n y C6 F8 49Z sing 16 n n C6 C13 49Z doub 17 n y C17 C13 49Z sing 18 n y C16 H1 49Z sing 19 n n C17 H2 49Z sing 20 n n C14 H3 49Z sing 21 n n C13 H4 49Z sing 22 n n C4 H5 49Z sing 23 n n C5 H6 49Z sing 24 n n C11 H7 49Z sing 25 n n C11 H8 49Z sing 26 n n C11 H9 49Z sing 27 n n C12 H10 49Z sing 28 n n C12 H11 49Z sing 29 n n C10 H12 49Z sing 30 n n C10 H13 49Z sing 31 n n C15 H14 49Z sing 32 n n C15 H15 49Z sing 33 n n N9 H16 49Z sing 34 n n # _atom_sites.entry_id 4Y2Y _atom_sites.fract_transf_matrix[1][1] 0.010791 _atom_sites.fract_transf_matrix[1][2] 0.00623 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 782 MG MG . C 3 49Z A 1 602 1 49Z UNL . D 4 HOH A 1 701 32 HOH HOH . D 4 HOH A 2 702 15 HOH HOH . D 4 HOH A 3 703 13 HOH HOH . D 4 HOH A 4 704 1 HOH HOH . D 4 HOH A 5 705 25 HOH HOH . D 4 HOH A 6 706 2 HOH HOH . D 4 HOH A 7 707 3 HOH HOH . D 4 HOH A 8 708 4 HOH HOH . D 4 HOH A 9 709 5 HOH HOH . D 4 HOH A 10 710 6 HOH HOH . D 4 HOH A 11 711 7 HOH HOH . D 4 HOH A 12 712 8 HOH HOH . D 4 HOH A 13 713 9 HOH HOH . D 4 HOH A 14 714 10 HOH HOH . D 4 HOH A 15 715 11 HOH HOH . D 4 HOH A 16 716 12 HOH HOH . D 4 HOH A 17 717 14 HOH HOH . D 4 HOH A 18 718 16 HOH HOH . D 4 HOH A 19 719 17 HOH HOH . D 4 HOH A 20 720 18 HOH HOH . D 4 HOH A 21 721 19 HOH HOH . D 4 HOH A 22 722 20 HOH HOH . D 4 HOH A 23 723 21 HOH HOH . D 4 HOH A 24 724 22 HOH HOH . D 4 HOH A 25 725 23 HOH HOH . D 4 HOH A 26 726 24 HOH HOH . D 4 HOH A 27 727 26 HOH HOH . D 4 HOH A 28 728 27 HOH HOH . D 4 HOH A 29 729 28 HOH HOH . D 4 HOH A 30 730 29 HOH HOH . D 4 HOH A 31 731 30 HOH HOH . D 4 HOH A 32 732 31 HOH HOH . D 4 HOH A 33 733 33 HOH HOH . D 4 HOH A 34 734 34 HOH HOH . D 4 HOH A 35 735 35 HOH HOH . D 4 HOH A 36 736 36 HOH HOH . D 4 HOH A 37 737 37 HOH HOH . D 4 HOH A 38 738 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 49Z . . . C 3 -17.203 -13.444 68.586 1 31.44 ? C16 49Z 602 A 1 HETATM 2 C C17 49Z . . . C 3 -17.135 -13.041 69.904 1 29.76 ? C17 49Z 602 A 1 HETATM 3 C C14 49Z . . . C 3 -17.726 -12.63 67.608 1 32.44 ? C14 49Z 602 A 1 HETATM 4 C C13 49Z . . . C 3 -17.598 -11.802 70.279 1 33.35 ? C13 49Z 602 A 1 HETATM 5 C C4 49Z . . . C 3 -16.514 -6.928 61.435 1 30.83 ? C4 49Z 602 A 1 HETATM 6 C C5 49Z . . . C 3 -16.242 -7.459 62.705 1 29.58 ? C5 49Z 602 A 1 HETATM 7 C C7 49Z . . . C 3 -18.198 -11.383 67.959 1 34.47 ? C7 49Z 602 A 1 HETATM 8 C C6 49Z . . . C 3 -18.13 -10.995 69.289 1 37.89 ? C6 49Z 602 A 1 HETATM 9 C C3 49Z . . . C 3 -17.685 -6.22 61.424 1 32.2 ? C3 49Z 602 A 1 HETATM 10 C C2 49Z . . . C 3 -17.195 -7.181 63.663 1 30.51 ? C2 49Z 602 A 1 HETATM 11 C C11 49Z . . . C 3 -18.302 -5.533 60.295 1 30.1 ? C11 49Z 602 A 1 HETATM 12 C C12 49Z . . . C 3 -18.772 -10.472 66.923 1 33.9 ? C12 49Z 602 A 1 HETATM 13 C C10 49Z . . . C 3 -17.221 -7.579 65.086 1 28.1 ? C10 49Z 602 A 1 HETATM 14 C C15 49Z . . . C 3 -17.816 -9.324 66.639 1 31.13 ? C15 49Z 602 A 1 HETATM 15 N N9 49Z . . . C 3 -17.923 -8.842 65.265 1 29.2 ? N9 49Z 602 A 1 HETATM 16 F F8 49Z . . . C 3 -18.585 -9.782 69.647 1 42.54 ? F8 49Z 602 A 1 HETATM 17 S S1 49Z . . . C 3 -18.431 -6.206 62.973 1 34.59 ? S1 49Z 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 17 #