data_4Y34 # _model_server_result.job_id 6rn491BJdsmZNOopV9CnGA _model_server_result.datetime_utc '2024-12-04 10:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4Y34 # _exptl.entry_id 4Y34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.307 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,2'-[(4-fluorobenzene-1,2-diyl)bis(oxy)]bis(5-nitrobenzonitrile)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y34 _cell.length_a 74.62 _cell.length_b 74.62 _cell.length_c 288.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H9 F N4 O6' _chem_comp.formula_weight 420.307 _chem_comp.id 45Z _chem_comp.mon_nstd_flag . _chem_comp.name "2,2'-[(4-fluorobenzene-1,2-diyl)bis(oxy)]bis(5-nitrobenzonitrile)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 N3 45Z sing 1 n n N3 O5 45Z doub 2 n n N3 C17 45Z sing 3 n n C16 C17 45Z doub 4 n y C16 C15 45Z sing 5 n y F C11 45Z sing 6 n n C17 C18 45Z sing 7 n y C15 C14 45Z doub 8 n y C11 C10 45Z doub 9 n y C11 C12 45Z sing 10 n y C10 C9 45Z sing 11 n y O1 N2 45Z sing 12 n n C12 C13 45Z doub 13 n y C18 C19 45Z doub 14 n y N2 O2 45Z doub 15 n n N2 C4 45Z sing 16 n n C14 C19 45Z sing 17 n y C14 O4 45Z sing 18 n n C9 C8 45Z doub 19 n y C4 C5 45Z doub 20 n y C4 C3 45Z sing 21 n y C5 C6 45Z sing 22 n y C13 C8 45Z sing 23 n y C13 O4 45Z sing 24 n n C19 C20 45Z sing 25 n n C3 C2 45Z doub 26 n y C8 O3 45Z sing 27 n n C6 C7 45Z doub 28 n y C2 C7 45Z sing 29 n y C2 C1 45Z sing 30 n n C7 O3 45Z sing 31 n n C1 N1 45Z trip 32 n n C20 N4 45Z trip 33 n n C3 H1 45Z sing 34 n n C5 H2 45Z sing 35 n n C9 H4 45Z sing 36 n n C10 H5 45Z sing 37 n n C12 H6 45Z sing 38 n n C18 H7 45Z sing 39 n n C15 H8 45Z sing 40 n n C16 H9 45Z sing 41 n n C6 H3 45Z sing 42 n n # _atom_sites.entry_id 4Y34 _atom_sites.fract_transf_matrix[1][1] 0.013401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 45Z A 1 501 1 45Z 143 . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 1 SO4 SO4 . E 3 SO4 A 1 504 2 SO4 SO4 . F 4 GOL A 1 505 1 GOL GOL . G 3 SO4 A 1 506 1 SO4 SO4 . H 4 GOL A 1 507 1 GOL GOL . I 4 GOL A 1 508 1 GOL GOL . J 4 GOL A 1 509 1 GOL GOL . K 3 SO4 A 1 510 1 SO4 SO4 . L 5 HOH A 1 601 59 HOH HOH . L 5 HOH A 2 602 9 HOH HOH . L 5 HOH A 3 603 1 HOH HOH . L 5 HOH A 4 604 19 HOH HOH . L 5 HOH A 5 605 2 HOH HOH . L 5 HOH A 6 606 6 HOH HOH . L 5 HOH A 7 607 8 HOH HOH . L 5 HOH A 8 608 9 HOH HOH . L 5 HOH A 9 609 4 HOH HOH . L 5 HOH A 10 610 5 HOH HOH . L 5 HOH A 11 611 7 HOH HOH . L 5 HOH A 12 612 8 HOH HOH . L 5 HOH A 13 613 10 HOH HOH . L 5 HOH A 14 614 11 HOH HOH . L 5 HOH A 15 615 12 HOH HOH . L 5 HOH A 16 616 13 HOH HOH . L 5 HOH A 17 617 14 HOH HOH . L 5 HOH A 18 618 15 HOH HOH . L 5 HOH A 19 619 20 HOH HOH . L 5 HOH A 20 620 21 HOH HOH . L 5 HOH A 21 621 24 HOH HOH . L 5 HOH A 22 622 26 HOH HOH . L 5 HOH A 23 623 27 HOH HOH . L 5 HOH A 24 624 29 HOH HOH . L 5 HOH A 25 625 32 HOH HOH . L 5 HOH A 26 626 34 HOH HOH . L 5 HOH A 27 627 35 HOH HOH . L 5 HOH A 28 628 36 HOH HOH . L 5 HOH A 29 629 38 HOH HOH . L 5 HOH A 30 630 41 HOH HOH . L 5 HOH A 31 631 45 HOH HOH . L 5 HOH A 32 632 48 HOH HOH . L 5 HOH A 33 633 53 HOH HOH . L 5 HOH A 34 634 56 HOH HOH . L 5 HOH A 35 635 60 HOH HOH . L 5 HOH A 36 636 65 HOH HOH . L 5 HOH A 37 637 67 HOH HOH . L 5 HOH A 38 638 69 HOH HOH . L 5 HOH A 39 639 70 HOH HOH . L 5 HOH A 40 640 74 HOH HOH . L 5 HOH A 41 641 75 HOH HOH . L 5 HOH A 42 642 76 HOH HOH . L 5 HOH A 43 643 91 HOH HOH . L 5 HOH A 44 644 102 HOH HOH . L 5 HOH A 45 645 106 HOH HOH . L 5 HOH A 46 646 126 HOH HOH . L 5 HOH A 47 647 149 HOH HOH . L 5 HOH A 48 648 152 HOH HOH . L 5 HOH A 49 649 157 HOH HOH . L 5 HOH A 50 650 1 HOH HOH . L 5 HOH A 51 651 2 HOH HOH . L 5 HOH A 52 652 3 HOH HOH . L 5 HOH A 53 653 1 HOH HOH . L 5 HOH A 54 654 2 HOH HOH . L 5 HOH A 55 655 3 HOH HOH . L 5 HOH A 56 656 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 45Z . . . B 2 61.135 40.533 60.6 1 133.01 ? N1 45Z 501 A 1 HETATM 2 C C1 45Z . . . B 2 61.82 41.339 60.161 1 133.21 ? C1 45Z 501 A 1 HETATM 3 C C2 45Z . . . B 2 62.547 42.296 59.806 0.7 134.4 ? C2 45Z 501 A 1 HETATM 4 C C3 45Z . . . B 2 63.808 42.016 59.373 0.7 133.89 ? C3 45Z 501 A 1 HETATM 5 C C4 45Z . . . B 2 64.575 43.086 58.982 1 134.98 ? C4 45Z 501 A 1 HETATM 6 N N2 45Z . . . B 2 65.843 42.809 58.542 1 135.38 ? N2 45Z 501 A 1 HETATM 7 O O1 45Z . . . B 2 66.026 41.726 58.021 1 135.34 ? O1 45Z 501 A 1 HETATM 8 O O2 45Z . . . B 2 66.73 43.638 58.683 1 135.85 ? O2 45Z 501 A 1 HETATM 9 C C5 45Z . . . B 2 64.12 44.403 59.005 0.7 135.87 ? C5 45Z 501 A 1 HETATM 10 C C6 45Z . . . B 2 62.833 44.666 59.447 0.7 136.28 ? C6 45Z 501 A 1 HETATM 11 C C7 45Z . . . B 2 62.047 43.589 59.846 1 136.2 ? C7 45Z 501 A 1 HETATM 12 O O3 45Z . . . B 2 60.766 43.817 60.29 1 137.38 ? O3 45Z 501 A 1 HETATM 13 C C8 45Z . . . B 2 59.726 43.649 59.424 1 137.93 ? C8 45Z 501 A 1 HETATM 14 C C9 45Z . . . B 2 59.609 42.4 58.838 1 137.43 ? C9 45Z 501 A 1 HETATM 15 C C10 45Z . . . B 2 58.597 42.148 57.943 1 138.65 ? C10 45Z 501 A 1 HETATM 16 C C11 45Z . . . B 2 57.702 43.158 57.642 1 139.6 ? C11 45Z 501 A 1 HETATM 17 F F 45Z . . . B 2 56.715 42.919 56.781 1 141.43 ? F 45Z 501 A 1 HETATM 18 C C12 45Z . . . B 2 57.795 44.41 58.221 1 139.62 ? C12 45Z 501 A 1 HETATM 19 C C13 45Z . . . B 2 58.816 44.675 59.125 1 139.05 ? C13 45Z 501 A 1 HETATM 20 O O4 45Z . . . B 2 58.881 45.953 59.658 1 138.44 ? O4 45Z 501 A 1 HETATM 21 C C14 45Z . . . B 2 59.155 47.019 58.812 1 137.18 ? C14 45Z 501 A 1 HETATM 22 C C19 45Z . . . B 2 60.109 47.993 59.16 1 136.16 ? C19 45Z 501 A 1 HETATM 23 C C20 45Z . . . B 2 60.798 47.976 60.254 1 135.32 ? C20 45Z 501 A 1 HETATM 24 N N4 45Z . . . B 2 61.41 48.012 61.247 1 134.34 ? N4 45Z 501 A 1 HETATM 25 C C18 45Z . . . B 2 60.353 49.031 58.276 1 134.56 ? C18 45Z 501 A 1 HETATM 26 C C15 45Z . . . B 2 58.472 47.115 57.572 1 136.04 ? C15 45Z 501 A 1 HETATM 27 C C16 45Z . . . B 2 58.716 48.156 56.691 1 133.49 ? C16 45Z 501 A 1 HETATM 28 C C17 45Z . . . B 2 59.658 49.091 57.08 1 133.11 ? C17 45Z 501 A 1 HETATM 29 N N3 45Z . . . B 2 59.934 50.151 56.27 1 132.55 ? N3 45Z 501 A 1 HETATM 30 O O5 45Z . . . B 2 60.02 51.279 56.783 1 132.48 ? O5 45Z 501 A 1 HETATM 31 O O6 45Z . . . B 2 60.059 49.943 55.076 1 133.1 ? O6 45Z 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #