data_4Y34
#
_model_server_result.job_id            J7QC5aEefXN9NvmgbYO50Q 
_model_server_result.datetime_utc      '2024-12-26 10:59:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y34 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    4Y34 
#
_exptl.entry_id    4Y34 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Y34 
_cell.length_a            74.62 
_cell.length_b            74.62 
_cell.length_c            288.43 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y34 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 171 n n 
C1 C2 GOL sing 172 n n 
C1 H11 GOL sing 173 n n 
C1 H12 GOL sing 174 n n 
O1 HO1 GOL sing 175 n n 
C2 O2 GOL sing 176 n n 
C2 C3 GOL sing 177 n n 
C2 H2 GOL sing 178 n n 
O2 HO2 GOL sing 179 n n 
C3 O3 GOL sing 180 n n 
C3 H31 GOL sing 181 n n 
C3 H32 GOL sing 182 n n 
O3 HO3 GOL sing 183 n n 
#
_atom_sites.entry_id                     4Y34 
_atom_sites.fract_transf_matrix[1][1]    0.013401 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003467 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 45Z A 1 501 1 45Z 143 . 
C 3 SO4 A 1 502 1 SO4 SO4 . 
D 3 SO4 A 1 503 1 SO4 SO4 . 
E 3 SO4 A 1 504 2 SO4 SO4 . 
F 4 GOL A 1 505 1 GOL GOL . 
G 3 SO4 A 1 506 1 SO4 SO4 . 
H 4 GOL A 1 507 1 GOL GOL . 
I 4 GOL A 1 508 1 GOL GOL . 
J 4 GOL A 1 509 1 GOL GOL . 
K 3 SO4 A 1 510 1 SO4 SO4 . 
L 5 HOH A 1 601 59 HOH HOH . 
L 5 HOH A 2 602 9 HOH HOH . 
L 5 HOH A 3 603 1 HOH HOH . 
L 5 HOH A 4 604 19 HOH HOH . 
L 5 HOH A 5 605 2 HOH HOH . 
L 5 HOH A 6 606 6 HOH HOH . 
L 5 HOH A 7 607 8 HOH HOH . 
L 5 HOH A 8 608 9 HOH HOH . 
L 5 HOH A 9 609 4 HOH HOH . 
L 5 HOH A 10 610 5 HOH HOH . 
L 5 HOH A 11 611 7 HOH HOH . 
L 5 HOH A 12 612 8 HOH HOH . 
L 5 HOH A 13 613 10 HOH HOH . 
L 5 HOH A 14 614 11 HOH HOH . 
L 5 HOH A 15 615 12 HOH HOH . 
L 5 HOH A 16 616 13 HOH HOH . 
L 5 HOH A 17 617 14 HOH HOH . 
L 5 HOH A 18 618 15 HOH HOH . 
L 5 HOH A 19 619 20 HOH HOH . 
L 5 HOH A 20 620 21 HOH HOH . 
L 5 HOH A 21 621 24 HOH HOH . 
L 5 HOH A 22 622 26 HOH HOH . 
L 5 HOH A 23 623 27 HOH HOH . 
L 5 HOH A 24 624 29 HOH HOH . 
L 5 HOH A 25 625 32 HOH HOH . 
L 5 HOH A 26 626 34 HOH HOH . 
L 5 HOH A 27 627 35 HOH HOH . 
L 5 HOH A 28 628 36 HOH HOH . 
L 5 HOH A 29 629 38 HOH HOH . 
L 5 HOH A 30 630 41 HOH HOH . 
L 5 HOH A 31 631 45 HOH HOH . 
L 5 HOH A 32 632 48 HOH HOH . 
L 5 HOH A 33 633 53 HOH HOH . 
L 5 HOH A 34 634 56 HOH HOH . 
L 5 HOH A 35 635 60 HOH HOH . 
L 5 HOH A 36 636 65 HOH HOH . 
L 5 HOH A 37 637 67 HOH HOH . 
L 5 HOH A 38 638 69 HOH HOH . 
L 5 HOH A 39 639 70 HOH HOH . 
L 5 HOH A 40 640 74 HOH HOH . 
L 5 HOH A 41 641 75 HOH HOH . 
L 5 HOH A 42 642 76 HOH HOH . 
L 5 HOH A 43 643 91 HOH HOH . 
L 5 HOH A 44 644 102 HOH HOH . 
L 5 HOH A 45 645 106 HOH HOH . 
L 5 HOH A 46 646 126 HOH HOH . 
L 5 HOH A 47 647 149 HOH HOH . 
L 5 HOH A 48 648 152 HOH HOH . 
L 5 HOH A 49 649 157 HOH HOH . 
L 5 HOH A 50 650 1 HOH HOH . 
L 5 HOH A 51 651 2 HOH HOH . 
L 5 HOH A 52 652 3 HOH HOH . 
L 5 HOH A 53 653 1 HOH HOH . 
L 5 HOH A 54 654 2 HOH HOH . 
L 5 HOH A 55 655 3 HOH HOH . 
L 5 HOH A 56 656 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 64.739 65.409 58.259 1 51.06 ? C1 GOL 505 A 1 
HETATM 2 O O1 GOL . . . F 4 64.471 64.022 58.167 1 51.76 ? O1 GOL 505 A 1 
HETATM 3 C C2 GOL . . . F 4 65.442 65.75 59.579 1 50.24 ? C2 GOL 505 A 1 
HETATM 4 O O2 GOL . . . F 4 66.474 66.651 59.369 1 44.53 ? O2 GOL 505 A 1 
HETATM 5 C C3 GOL . . . F 4 64.501 66.397 60.575 1 53.12 ? C3 GOL 505 A 1 
HETATM 6 O O3 GOL . . . F 4 63.858 67.438 59.875 1 58.01 ? O3 GOL 505 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#