data_4Y34 # _model_server_result.job_id hf1mFRrDwJ_Pk0MB7J8Cdg _model_server_result.datetime_utc '2024-12-04 21:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 4Y34 # _exptl.entry_id 4Y34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y34 _cell.length_a 74.62 _cell.length_b 74.62 _cell.length_c 288.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N ? 4 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 171 n n C1 C2 GOL sing 172 n n C1 H11 GOL sing 173 n n C1 H12 GOL sing 174 n n O1 HO1 GOL sing 175 n n C2 O2 GOL sing 176 n n C2 C3 GOL sing 177 n n C2 H2 GOL sing 178 n n O2 HO2 GOL sing 179 n n C3 O3 GOL sing 180 n n C3 H31 GOL sing 181 n n C3 H32 GOL sing 182 n n O3 HO3 GOL sing 183 n n # _atom_sites.entry_id 4Y34 _atom_sites.fract_transf_matrix[1][1] 0.013401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 45Z A 1 501 1 45Z 143 . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 1 SO4 SO4 . E 3 SO4 A 1 504 2 SO4 SO4 . F 4 GOL A 1 505 1 GOL GOL . G 3 SO4 A 1 506 1 SO4 SO4 . H 4 GOL A 1 507 1 GOL GOL . I 4 GOL A 1 508 1 GOL GOL . J 4 GOL A 1 509 1 GOL GOL . K 3 SO4 A 1 510 1 SO4 SO4 . L 5 HOH A 1 601 59 HOH HOH . L 5 HOH A 2 602 9 HOH HOH . L 5 HOH A 3 603 1 HOH HOH . L 5 HOH A 4 604 19 HOH HOH . L 5 HOH A 5 605 2 HOH HOH . L 5 HOH A 6 606 6 HOH HOH . L 5 HOH A 7 607 8 HOH HOH . L 5 HOH A 8 608 9 HOH HOH . L 5 HOH A 9 609 4 HOH HOH . L 5 HOH A 10 610 5 HOH HOH . L 5 HOH A 11 611 7 HOH HOH . L 5 HOH A 12 612 8 HOH HOH . L 5 HOH A 13 613 10 HOH HOH . L 5 HOH A 14 614 11 HOH HOH . L 5 HOH A 15 615 12 HOH HOH . L 5 HOH A 16 616 13 HOH HOH . L 5 HOH A 17 617 14 HOH HOH . L 5 HOH A 18 618 15 HOH HOH . L 5 HOH A 19 619 20 HOH HOH . L 5 HOH A 20 620 21 HOH HOH . L 5 HOH A 21 621 24 HOH HOH . L 5 HOH A 22 622 26 HOH HOH . L 5 HOH A 23 623 27 HOH HOH . L 5 HOH A 24 624 29 HOH HOH . L 5 HOH A 25 625 32 HOH HOH . L 5 HOH A 26 626 34 HOH HOH . L 5 HOH A 27 627 35 HOH HOH . L 5 HOH A 28 628 36 HOH HOH . L 5 HOH A 29 629 38 HOH HOH . L 5 HOH A 30 630 41 HOH HOH . L 5 HOH A 31 631 45 HOH HOH . L 5 HOH A 32 632 48 HOH HOH . L 5 HOH A 33 633 53 HOH HOH . L 5 HOH A 34 634 56 HOH HOH . L 5 HOH A 35 635 60 HOH HOH . L 5 HOH A 36 636 65 HOH HOH . L 5 HOH A 37 637 67 HOH HOH . L 5 HOH A 38 638 69 HOH HOH . L 5 HOH A 39 639 70 HOH HOH . L 5 HOH A 40 640 74 HOH HOH . L 5 HOH A 41 641 75 HOH HOH . L 5 HOH A 42 642 76 HOH HOH . L 5 HOH A 43 643 91 HOH HOH . L 5 HOH A 44 644 102 HOH HOH . L 5 HOH A 45 645 106 HOH HOH . L 5 HOH A 46 646 126 HOH HOH . L 5 HOH A 47 647 149 HOH HOH . L 5 HOH A 48 648 152 HOH HOH . L 5 HOH A 49 649 157 HOH HOH . L 5 HOH A 50 650 1 HOH HOH . L 5 HOH A 51 651 2 HOH HOH . L 5 HOH A 52 652 3 HOH HOH . L 5 HOH A 53 653 1 HOH HOH . L 5 HOH A 54 654 2 HOH HOH . L 5 HOH A 55 655 3 HOH HOH . L 5 HOH A 56 656 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 73.662 54.747 48.232 1 67.61 ? C1 GOL 507 A 1 HETATM 2 O O1 GOL . . . H 4 74.945 54.461 47.719 1 68.68 ? O1 GOL 507 A 1 HETATM 3 C C2 GOL . . . H 4 73.842 55.545 49.509 1 66.2 ? C2 GOL 507 A 1 HETATM 4 O O2 GOL . . . H 4 75.21 55.656 49.758 1 65.02 ? O2 GOL 507 A 1 HETATM 5 C C3 GOL . . . H 4 73.289 56.947 49.311 1 66.75 ? C3 GOL 507 A 1 HETATM 6 O O3 GOL . . . H 4 73.671 57.779 50.388 1 67.64 ? O3 GOL 507 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #