data_4Y3C
#
_model_server_result.job_id            oBio5JB0oiJu-6lR1m6zOw 
_model_server_result.datetime_utc      '2024-12-26 22:12:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":503}' 
#
_entry.id    4Y3C 
#
_exptl.entry_id    4Y3C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          126.03 
_cell.angle_gamma         90 
_cell.entry_id            4Y3C 
_cell.length_a            232.332 
_cell.length_b            140.775 
_cell.length_c            171.838 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y3C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,R 1 1 
B,S 2 1 
C,T 3 1 
D,G,H,I,J,K,U 4 1 
E,L,M,N,V 5 1 
F,O,P,Q,W 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 184 A CYS 184 1_555 A SG CYS 295 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 184 B CYS 184 1_555 B SG CYS 295 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 C SG CYS 184 C CYS 184 1_555 C SG CYS 295 C CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 E SG CYS 184 E CYS 184 1_555 E SG CYS 295 E CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 F SG CYS 184 F CYS 184 1_555 F SG CYS 295 F CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4Y3C 
_atom_sites.fract_transf_matrix[1][1]    0.004304 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003131 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007196 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GOL D 1 501 3 GOL GOL . 
H 2 GOL D 1 502 5 GOL GOL . 
I 2 GOL D 1 503 11 GOL GOL . 
J 2 GOL D 1 504 12 GOL GOL . 
K 3 CL D 1 505 1 CL CL . 
L 2 GOL E 1 501 2 GOL GOL . 
M 2 GOL E 1 502 4 GOL GOL . 
N 2 GOL E 1 503 9 GOL GOL . 
O 2 GOL F 1 501 6 GOL GOL . 
P 2 GOL F 1 502 10 GOL GOL . 
Q 2 GOL F 1 503 14 GOL GOL . 
R 4 HOH A 1 501 145 HOH HOH . 
R 4 HOH A 2 502 52 HOH HOH . 
R 4 HOH A 3 503 90 HOH HOH . 
R 4 HOH A 4 504 56 HOH HOH . 
R 4 HOH A 5 505 9 HOH HOH . 
R 4 HOH A 6 506 10 HOH HOH . 
R 4 HOH A 7 507 20 HOH HOH . 
R 4 HOH A 8 508 25 HOH HOH . 
R 4 HOH A 9 509 26 HOH HOH . 
R 4 HOH A 10 510 33 HOH HOH . 
R 4 HOH A 11 511 38 HOH HOH . 
R 4 HOH A 12 512 50 HOH HOH . 
R 4 HOH A 13 513 58 HOH HOH . 
R 4 HOH A 14 514 87 HOH HOH . 
R 4 HOH A 15 515 89 HOH HOH . 
R 4 HOH A 16 516 93 HOH HOH . 
R 4 HOH A 17 517 94 HOH HOH . 
R 4 HOH A 18 518 97 HOH HOH . 
R 4 HOH A 19 519 108 HOH HOH . 
R 4 HOH A 20 520 114 HOH HOH . 
R 4 HOH A 21 521 147 HOH HOH . 
R 4 HOH A 22 522 153 HOH HOH . 
R 4 HOH A 23 523 160 HOH HOH . 
R 4 HOH A 24 524 161 HOH HOH . 
R 4 HOH A 25 525 163 HOH HOH . 
R 4 HOH A 26 526 171 HOH HOH . 
S 4 HOH B 1 501 1 HOH HOH . 
S 4 HOH B 2 502 67 HOH HOH . 
S 4 HOH B 3 503 76 HOH HOH . 
S 4 HOH B 4 504 111 HOH HOH . 
S 4 HOH B 5 505 134 HOH HOH . 
T 4 HOH C 1 501 17 HOH HOH . 
T 4 HOH C 2 502 39 HOH HOH . 
T 4 HOH C 3 503 117 HOH HOH . 
U 4 HOH D 1 601 22 HOH HOH . 
U 4 HOH D 2 602 40 HOH HOH . 
U 4 HOH D 3 603 41 HOH HOH . 
U 4 HOH D 4 604 91 HOH HOH . 
U 4 HOH D 5 605 109 HOH HOH . 
U 4 HOH D 6 606 138 HOH HOH . 
U 4 HOH D 7 607 166 HOH HOH . 
V 4 HOH E 1 601 5 HOH HOH . 
V 4 HOH E 2 602 21 HOH HOH . 
V 4 HOH E 3 603 24 HOH HOH . 
V 4 HOH E 4 604 27 HOH HOH . 
V 4 HOH E 5 605 28 HOH HOH . 
V 4 HOH E 6 606 35 HOH HOH . 
V 4 HOH E 7 607 36 HOH HOH . 
V 4 HOH E 8 608 37 HOH HOH . 
V 4 HOH E 9 609 74 HOH HOH . 
V 4 HOH E 10 610 102 HOH HOH . 
V 4 HOH E 11 611 106 HOH HOH . 
V 4 HOH E 12 612 118 HOH HOH . 
V 4 HOH E 13 613 119 HOH HOH . 
V 4 HOH E 14 614 120 HOH HOH . 
V 4 HOH E 15 615 136 HOH HOH . 
V 4 HOH E 16 616 142 HOH HOH . 
W 4 HOH F 1 601 48 HOH HOH . 
W 4 HOH F 2 602 165 HOH HOH . 
W 4 HOH F 3 603 49 HOH HOH . 
W 4 HOH F 4 604 29 HOH HOH . 
W 4 HOH F 5 605 164 HOH HOH . 
W 4 HOH F 6 606 19 HOH HOH . 
W 4 HOH F 7 607 31 HOH HOH . 
W 4 HOH F 8 608 53 HOH HOH . 
W 4 HOH F 9 609 55 HOH HOH . 
W 4 HOH F 10 610 57 HOH HOH . 
W 4 HOH F 11 611 64 HOH HOH . 
W 4 HOH F 12 612 110 HOH HOH . 
W 4 HOH F 13 613 137 HOH HOH . 
W 4 HOH F 14 614 168 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . Q 2 0.225 14.203 42.136 1 115.28 ? C1 GOL 503 F 1 
HETATM 2 O O1 GOL . . . Q 2 0.54 14.848 40.896 1 113.77 ? O1 GOL 503 F 1 
HETATM 3 C C2 GOL . . . Q 2 1.47 13.528 42.705 1 116.42 ? C2 GOL 503 F 1 
HETATM 4 O O2 GOL . . . Q 2 2.56 14.459 42.741 1 116.97 ? O2 GOL 503 F 1 
HETATM 5 C C3 GOL . . . Q 2 1.186 13 44.11 1 116.67 ? C3 GOL 503 F 1 
HETATM 6 O O3 GOL . . . Q 2 1.062 14.085 45.038 1 116.41 ? O3 GOL 503 F 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#