data_4Y3J # _model_server_result.job_id qSsU5G-hbSfAbCdqSoJtOg _model_server_result.datetime_utc '2024-11-07 15:56:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4Y3J # _exptl.entry_id 4Y3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.08 _cell.angle_gamma 90 _cell.entry_id 4Y3J _cell.length_a 45.216 _cell.length_b 73.272 _cell.length_c 52.787 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.041 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4Y3J _atom_sites.fract_transf_matrix[1][1] 0.022116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 2 GOL A 1 402 402 GOL GOL . D 2 GOL A 1 403 403 GOL GOL . E 2 GOL A 1 404 404 GOL GOL . F 2 GOL A 1 405 405 GOL GOL . G 3 ACT A 1 406 406 ACT ACT . H 3 ACT A 1 407 407 ACT ACT . I 3 ACT A 1 408 408 ACT ACT . J 3 ACT A 1 409 409 ACT ACT . K 3 ACT A 1 410 410 ACT ACT . L 4 DMS A 1 411 411 DMS DMS . M 4 DMS A 1 412 412 DMS DMS . N 4 DMS A 1 413 413 DMS DMS . O 4 DMS A 1 414 414 DMS DMS . P 5 HIC A 1 415 415 HIC HIC . Q 6 HOH A 1 501 501 HOH HOH . Q 6 HOH A 2 503 503 HOH HOH . Q 6 HOH A 3 569 569 HOH HOH . Q 6 HOH A 4 582 582 HOH HOH . Q 6 HOH A 5 584 584 HOH HOH . Q 6 HOH A 6 588 588 HOH HOH . Q 6 HOH A 7 589 589 HOH HOH . Q 6 HOH A 8 612 612 HOH HOH . Q 6 HOH A 9 621 621 HOH HOH . Q 6 HOH A 10 629 629 HOH HOH . Q 6 HOH A 11 638 638 HOH HOH . Q 6 HOH A 12 674 674 HOH HOH . Q 6 HOH A 13 677 677 HOH HOH . Q 6 HOH A 14 678 678 HOH HOH . Q 6 HOH A 15 686 686 HOH HOH . Q 6 HOH A 16 690 690 HOH HOH . Q 6 HOH A 17 696 696 HOH HOH . Q 6 HOH A 18 731 731 HOH HOH . Q 6 HOH A 19 733 733 HOH HOH . Q 6 HOH A 20 738 738 HOH HOH . Q 6 HOH A 21 744 744 HOH HOH . Q 6 HOH A 22 747 747 HOH HOH . Q 6 HOH A 23 748 748 HOH HOH . Q 6 HOH A 24 760 760 HOH HOH . Q 6 HOH A 25 775 775 HOH HOH . Q 6 HOH A 26 786 786 HOH HOH . Q 6 HOH A 27 798 798 HOH HOH . Q 6 HOH A 28 804 804 HOH HOH . Q 6 HOH A 29 806 806 HOH HOH . Q 6 HOH A 30 807 807 HOH HOH . Q 6 HOH A 31 813 813 HOH HOH . Q 6 HOH A 32 819 819 HOH HOH . Q 6 HOH A 33 826 826 HOH HOH . Q 6 HOH A 34 830 830 HOH HOH . Q 6 HOH A 35 835 835 HOH HOH . Q 6 HOH A 36 852 852 HOH HOH . Q 6 HOH A 37 855 855 HOH HOH . Q 6 HOH A 38 861 861 HOH HOH . Q 6 HOH A 39 864 864 HOH HOH . Q 6 HOH A 40 867 867 HOH HOH . Q 6 HOH A 41 877 877 HOH HOH . Q 6 HOH A 42 896 896 HOH HOH . Q 6 HOH A 43 897 897 HOH HOH . Q 6 HOH A 44 905 905 HOH HOH . Q 6 HOH A 45 913 913 HOH HOH . Q 6 HOH A 46 925 925 HOH HOH . Q 6 HOH A 47 938 938 HOH HOH . Q 6 HOH A 48 948 948 HOH HOH . Q 6 HOH A 49 955 955 HOH HOH . Q 6 HOH A 50 957 957 HOH HOH . Q 6 HOH A 51 959 959 HOH HOH . Q 6 HOH A 52 970 970 HOH HOH . Q 6 HOH A 53 971 971 HOH HOH . Q 6 HOH A 54 978 978 HOH HOH . Q 6 HOH A 55 988 988 HOH HOH . Q 6 HOH A 56 992 992 HOH HOH . Q 6 HOH A 57 996 996 HOH HOH . Q 6 HOH A 58 1010 1010 HOH HOH . Q 6 HOH A 59 1014 1014 HOH HOH . Q 6 HOH A 60 1026 1026 HOH HOH . Q 6 HOH A 61 1029 1029 HOH HOH . Q 6 HOH A 62 1030 1030 HOH HOH . Q 6 HOH A 63 1038 1038 HOH HOH . Q 6 HOH A 64 1070 1070 HOH HOH . Q 6 HOH A 65 1071 1071 HOH HOH . Q 6 HOH A 66 1077 1077 HOH HOH . Q 6 HOH A 67 1081 1081 HOH HOH . Q 6 HOH A 68 1089 1089 HOH HOH . Q 6 HOH A 69 1091 1091 HOH HOH . Q 6 HOH A 70 1092 1092 HOH HOH . Q 6 HOH A 71 1095 1095 HOH HOH . Q 6 HOH A 72 1102 1102 HOH HOH . Q 6 HOH A 73 1107 1107 HOH HOH . Q 6 HOH A 74 1110 1110 HOH HOH . Q 6 HOH A 75 1111 1111 HOH HOH . Q 6 HOH A 76 1115 1115 HOH HOH . Q 6 HOH A 77 1124 1124 HOH HOH . Q 6 HOH A 78 1149 1149 HOH HOH . Q 6 HOH A 79 1162 1162 HOH HOH . Q 6 HOH A 80 1173 1173 HOH HOH . Q 6 HOH A 81 1180 1180 HOH HOH . Q 6 HOH A 82 1190 1190 HOH HOH . Q 6 HOH A 83 1207 1207 HOH HOH . Q 6 HOH A 84 1223 1223 HOH HOH . Q 6 HOH A 85 1226 1226 HOH HOH . Q 6 HOH A 86 1239 1239 HOH HOH . Q 6 HOH A 87 1244 1244 HOH HOH . Q 6 HOH A 88 1269 1269 HOH HOH . Q 6 HOH A 89 1282 1282 HOH HOH . Q 6 HOH A 90 1290 1290 HOH HOH . Q 6 HOH A 91 1292 1292 HOH HOH . Q 6 HOH A 92 1302 1302 HOH HOH . Q 6 HOH A 93 1304 1304 HOH HOH . Q 6 HOH A 94 1311 1311 HOH HOH . Q 6 HOH A 95 1312 1312 HOH HOH . Q 6 HOH A 96 1316 1316 HOH HOH . Q 6 HOH A 97 1329 1329 HOH HOH . Q 6 HOH A 98 1340 1340 HOH HOH . Q 6 HOH A 99 1342 1342 HOH HOH . Q 6 HOH A 100 1359 1359 HOH HOH . Q 6 HOH A 101 1365 1365 HOH HOH . Q 6 HOH A 102 1369 1369 HOH HOH . Q 6 HOH A 103 1384 1384 HOH HOH . Q 6 HOH A 104 1387 1387 HOH HOH . Q 6 HOH A 105 1388 1388 HOH HOH . Q 6 HOH A 106 1392 1392 HOH HOH . Q 6 HOH A 107 1394 1394 HOH HOH . Q 6 HOH A 108 1401 1401 HOH HOH . Q 6 HOH A 109 1410 1410 HOH HOH . Q 6 HOH A 110 1421 1421 HOH HOH . Q 6 HOH A 111 1441 1441 HOH HOH . Q 6 HOH A 112 1448 1448 HOH HOH . Q 6 HOH A 113 1450 1450 HOH HOH . Q 6 HOH A 114 1459 1459 HOH HOH . Q 6 HOH A 115 1460 1460 HOH HOH . Q 6 HOH A 116 1461 1461 HOH HOH . Q 6 HOH A 117 1463 1463 HOH HOH . Q 6 HOH A 118 1466 1466 HOH HOH . Q 6 HOH A 119 1475 1475 HOH HOH . Q 6 HOH A 120 1495 1495 HOH HOH . Q 6 HOH A 121 1516 1516 HOH HOH . Q 6 HOH A 122 1534 1534 HOH HOH . Q 6 HOH A 123 1535 1535 HOH HOH . Q 6 HOH A 124 1538 1538 HOH HOH . Q 6 HOH A 125 1540 1540 HOH HOH . Q 6 HOH A 126 1555 1555 HOH HOH . Q 6 HOH A 127 1562 1562 HOH HOH . Q 6 HOH A 128 1566 1566 HOH HOH . Q 6 HOH A 129 1572 1572 HOH HOH . Q 6 HOH A 130 1593 1593 HOH HOH . Q 6 HOH A 131 1594 1594 HOH HOH . Q 6 HOH A 132 1610 1610 HOH HOH . Q 6 HOH A 133 1612 1612 HOH HOH . Q 6 HOH A 134 1637 1637 HOH HOH . Q 6 HOH A 135 1638 1638 HOH HOH . Q 6 HOH A 136 1640 1640 HOH HOH . Q 6 HOH A 137 1646 1646 HOH HOH . Q 6 HOH A 138 1651 1651 HOH HOH . Q 6 HOH A 139 1699 1699 HOH HOH . Q 6 HOH A 140 1706 1706 HOH HOH . Q 6 HOH A 141 1709 1709 HOH HOH . Q 6 HOH A 142 1718 1718 HOH HOH . Q 6 HOH A 143 1731 1731 HOH HOH . Q 6 HOH A 144 1737 1737 HOH HOH . Q 6 HOH A 145 1739 1739 HOH HOH . Q 6 HOH A 146 1745 1745 HOH HOH . Q 6 HOH A 147 1757 1757 HOH HOH . Q 6 HOH A 148 1772 1772 HOH HOH . Q 6 HOH A 149 1776 1776 HOH HOH . Q 6 HOH A 150 1782 1782 HOH HOH . Q 6 HOH A 151 1784 1784 HOH HOH . Q 6 HOH A 152 1791 1791 HOH HOH . Q 6 HOH A 153 1792 1792 HOH HOH . Q 6 HOH A 154 1805 1805 HOH HOH . Q 6 HOH A 155 1840 1840 HOH HOH . Q 6 HOH A 156 1846 1846 HOH HOH . Q 6 HOH A 157 1853 1853 HOH HOH . Q 6 HOH A 158 1859 1859 HOH HOH . Q 6 HOH A 159 1897 1897 HOH HOH . Q 6 HOH A 160 1906 1906 HOH HOH . Q 6 HOH A 161 1910 1910 HOH HOH . Q 6 HOH A 162 1932 1932 HOH HOH . Q 6 HOH A 163 1973 1973 HOH HOH . Q 6 HOH A 164 1977 1977 HOH HOH . Q 6 HOH A 165 1984 1984 HOH HOH . Q 6 HOH A 166 1987 1987 HOH HOH . Q 6 HOH A 167 1999 1999 HOH HOH . Q 6 HOH A 168 2055 2055 HOH HOH . Q 6 HOH A 169 2057 2057 HOH HOH . Q 6 HOH A 170 2060 2060 HOH HOH . Q 6 HOH A 171 2084 2084 HOH HOH . Q 6 HOH A 172 2085 2085 HOH HOH . Q 6 HOH A 173 2093 2093 HOH HOH . Q 6 HOH A 174 2095 2095 HOH HOH . Q 6 HOH A 175 2102 2102 HOH HOH . Q 6 HOH A 176 2107 2107 HOH HOH . Q 6 HOH A 177 2110 2110 HOH HOH . Q 6 HOH A 178 2137 2137 HOH HOH . Q 6 HOH A 179 2138 2138 HOH HOH . Q 6 HOH A 180 2156 2156 HOH HOH . Q 6 HOH A 181 2159 2159 HOH HOH . Q 6 HOH A 182 2163 2163 HOH HOH . Q 6 HOH A 183 2166 2166 HOH HOH . Q 6 HOH A 184 2167 2167 HOH HOH . Q 6 HOH A 185 2180 2180 HOH HOH . Q 6 HOH A 186 2185 2185 HOH HOH . Q 6 HOH A 187 2198 2198 HOH HOH . Q 6 HOH A 188 2227 2227 HOH HOH . Q 6 HOH A 189 2247 2247 HOH HOH . Q 6 HOH A 190 2283 2283 HOH HOH . Q 6 HOH A 191 2307 2307 HOH HOH . Q 6 HOH A 192 2308 2308 HOH HOH . Q 6 HOH A 193 2319 2319 HOH HOH . Q 6 HOH A 194 2331 2331 HOH HOH . Q 6 HOH A 195 2339 2339 HOH HOH . Q 6 HOH A 196 2344 2344 HOH HOH . Q 6 HOH A 197 2354 2354 HOH HOH . Q 6 HOH A 198 2355 2355 HOH HOH . Q 6 HOH A 199 2357 2357 HOH HOH . Q 6 HOH A 200 2364 2364 HOH HOH . Q 6 HOH A 201 2384 2384 HOH HOH . Q 6 HOH A 202 2450 2450 HOH HOH . Q 6 HOH A 203 2451 2451 HOH HOH . Q 6 HOH A 204 2459 2459 HOH HOH . Q 6 HOH A 205 2520 2520 HOH HOH . Q 6 HOH A 206 2524 2524 HOH HOH . Q 6 HOH A 207 2533 2533 HOH HOH . Q 6 HOH A 208 2535 2535 HOH HOH . Q 6 HOH A 209 2552 2552 HOH HOH . Q 6 HOH A 210 2585 2585 HOH HOH . Q 6 HOH A 211 2602 2602 HOH HOH . Q 6 HOH A 212 2611 2611 HOH HOH . Q 6 HOH A 213 2625 2625 HOH HOH . Q 6 HOH A 214 2660 2660 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 1.124 19.179 -14.837 0.84 21.36 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 2 1.459 17.831 -14.561 0.84 24.38 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 2 2.329 20.042 -14.466 0.84 21.06 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 2 3.338 19.777 -15.415 0.84 22.87 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 2 1.995 21.528 -14.471 0.84 16.85 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 2 3.175 22.246 -14.207 0.84 13.19 ? O3 GOL 404 A 1 HETATM 7 H H11 GOL . . . E 2 0.254 19.477 -14.252 0.84 25.63 ? H11 GOL 404 A 1 HETATM 8 H H12 GOL . . . E 2 0.889 19.298 -15.895 0.84 25.63 ? H12 GOL 404 A 1 HETATM 9 H HO1 GOL . . . E 2 0.679 17.26 -14.728 0.84 29.26 ? HO1 GOL 404 A 1 HETATM 10 H H2 GOL . . . E 2 2.671 19.76 -13.47 0.84 25.28 ? H2 GOL 404 A 1 HETATM 11 H HO2 GOL . . . E 2 3.028 20.047 -16.305 0.84 27.44 ? HO2 GOL 404 A 1 HETATM 12 H H31 GOL . . . E 2 1.247 21.745 -13.709 0.84 20.22 ? H31 GOL 404 A 1 HETATM 13 H H32 GOL . . . E 2 1.592 21.816 -15.442 0.84 20.22 ? H32 GOL 404 A 1 HETATM 14 H HO3 GOL . . . E 2 2.973 23.204 -14.167 0.84 15.83 ? HO3 GOL 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #