data_4Y3S # _model_server_result.job_id jEcBDj8webXvMSbmQMt-2w _model_server_result.datetime_utc '2024-10-12 15:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4Y3S # _exptl.entry_id 4Y3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.5 _cell.angle_gamma 90 _cell.entry_id 4Y3S _cell.length_a 45.251 _cell.length_b 73.046 _cell.length_c 52.778 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 4Y3S _atom_sites.fract_transf_matrix[1][1] 0.022099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007824 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 3 ACT A 1 402 402 ACT ACT . D 4 46L A 1 403 403 46L 46L . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 503 503 HOH HOH . E 5 HOH A 3 569 569 HOH HOH . E 5 HOH A 4 582 582 HOH HOH . E 5 HOH A 5 588 588 HOH HOH . E 5 HOH A 6 589 589 HOH HOH . E 5 HOH A 7 612 612 HOH HOH . E 5 HOH A 8 621 621 HOH HOH . E 5 HOH A 9 629 629 HOH HOH . E 5 HOH A 10 638 638 HOH HOH . E 5 HOH A 11 645 645 HOH HOH . E 5 HOH A 12 677 677 HOH HOH . E 5 HOH A 13 678 678 HOH HOH . E 5 HOH A 14 686 686 HOH HOH . E 5 HOH A 15 690 690 HOH HOH . E 5 HOH A 16 731 731 HOH HOH . E 5 HOH A 17 733 733 HOH HOH . E 5 HOH A 18 738 738 HOH HOH . E 5 HOH A 19 744 744 HOH HOH . E 5 HOH A 20 747 747 HOH HOH . E 5 HOH A 21 748 748 HOH HOH . E 5 HOH A 22 760 760 HOH HOH . E 5 HOH A 23 775 775 HOH HOH . E 5 HOH A 24 786 786 HOH HOH . E 5 HOH A 25 787 787 HOH HOH . E 5 HOH A 26 798 798 HOH HOH . E 5 HOH A 27 804 804 HOH HOH . E 5 HOH A 28 807 807 HOH HOH . E 5 HOH A 29 813 813 HOH HOH . E 5 HOH A 30 817 817 HOH HOH . E 5 HOH A 31 819 819 HOH HOH . E 5 HOH A 32 826 826 HOH HOH . E 5 HOH A 33 830 830 HOH HOH . E 5 HOH A 34 835 835 HOH HOH . E 5 HOH A 35 852 852 HOH HOH . E 5 HOH A 36 864 864 HOH HOH . E 5 HOH A 37 867 867 HOH HOH . E 5 HOH A 38 877 877 HOH HOH . E 5 HOH A 39 881 881 HOH HOH . E 5 HOH A 40 883 883 HOH HOH . E 5 HOH A 41 895 895 HOH HOH . E 5 HOH A 42 896 896 HOH HOH . E 5 HOH A 43 897 897 HOH HOH . E 5 HOH A 44 905 905 HOH HOH . E 5 HOH A 45 913 913 HOH HOH . E 5 HOH A 46 914 914 HOH HOH . E 5 HOH A 47 925 925 HOH HOH . E 5 HOH A 48 932 932 HOH HOH . E 5 HOH A 49 938 938 HOH HOH . E 5 HOH A 50 948 948 HOH HOH . E 5 HOH A 51 950 950 HOH HOH . E 5 HOH A 52 955 955 HOH HOH . E 5 HOH A 53 959 959 HOH HOH . E 5 HOH A 54 970 970 HOH HOH . E 5 HOH A 55 971 971 HOH HOH . E 5 HOH A 56 977 977 HOH HOH . E 5 HOH A 57 978 978 HOH HOH . E 5 HOH A 58 988 988 HOH HOH . E 5 HOH A 59 992 992 HOH HOH . E 5 HOH A 60 995 995 HOH HOH . E 5 HOH A 61 996 996 HOH HOH . E 5 HOH A 62 1005 1005 HOH HOH . E 5 HOH A 63 1010 1010 HOH HOH . E 5 HOH A 64 1014 1014 HOH HOH . E 5 HOH A 65 1026 1026 HOH HOH . E 5 HOH A 66 1038 1038 HOH HOH . E 5 HOH A 67 1070 1070 HOH HOH . E 5 HOH A 68 1073 1073 HOH HOH . E 5 HOH A 69 1079 1079 HOH HOH . E 5 HOH A 70 1081 1081 HOH HOH . E 5 HOH A 71 1089 1089 HOH HOH . E 5 HOH A 72 1092 1092 HOH HOH . E 5 HOH A 73 1095 1095 HOH HOH . E 5 HOH A 74 1107 1107 HOH HOH . E 5 HOH A 75 1110 1110 HOH HOH . E 5 HOH A 76 1111 1111 HOH HOH . E 5 HOH A 77 1115 1115 HOH HOH . E 5 HOH A 78 1116 1116 HOH HOH . E 5 HOH A 79 1124 1124 HOH HOH . E 5 HOH A 80 1125 1125 HOH HOH . E 5 HOH A 81 1140 1140 HOH HOH . E 5 HOH A 82 1141 1141 HOH HOH . E 5 HOH A 83 1149 1149 HOH HOH . E 5 HOH A 84 1161 1161 HOH HOH . E 5 HOH A 85 1167 1167 HOH HOH . E 5 HOH A 86 1172 1172 HOH HOH . E 5 HOH A 87 1173 1173 HOH HOH . E 5 HOH A 88 1180 1180 HOH HOH . E 5 HOH A 89 1190 1190 HOH HOH . E 5 HOH A 90 1207 1207 HOH HOH . E 5 HOH A 91 1210 1210 HOH HOH . E 5 HOH A 92 1220 1220 HOH HOH . E 5 HOH A 93 1221 1221 HOH HOH . E 5 HOH A 94 1223 1223 HOH HOH . E 5 HOH A 95 1226 1226 HOH HOH . E 5 HOH A 96 1232 1232 HOH HOH . E 5 HOH A 97 1236 1236 HOH HOH . E 5 HOH A 98 1237 1237 HOH HOH . E 5 HOH A 99 1244 1244 HOH HOH . E 5 HOH A 100 1246 1246 HOH HOH . E 5 HOH A 101 1260 1260 HOH HOH . E 5 HOH A 102 1282 1282 HOH HOH . E 5 HOH A 103 1286 1286 HOH HOH . E 5 HOH A 104 1290 1290 HOH HOH . E 5 HOH A 105 1292 1292 HOH HOH . E 5 HOH A 106 1299 1299 HOH HOH . E 5 HOH A 107 1302 1302 HOH HOH . E 5 HOH A 108 1304 1304 HOH HOH . E 5 HOH A 109 1306 1306 HOH HOH . E 5 HOH A 110 1316 1316 HOH HOH . E 5 HOH A 111 1317 1317 HOH HOH . E 5 HOH A 112 1329 1329 HOH HOH . E 5 HOH A 113 1340 1340 HOH HOH . E 5 HOH A 114 1346 1346 HOH HOH . E 5 HOH A 115 1359 1359 HOH HOH . E 5 HOH A 116 1361 1361 HOH HOH . E 5 HOH A 117 1365 1365 HOH HOH . E 5 HOH A 118 1369 1369 HOH HOH . E 5 HOH A 119 1384 1384 HOH HOH . E 5 HOH A 120 1394 1394 HOH HOH . E 5 HOH A 121 1401 1401 HOH HOH . E 5 HOH A 122 1402 1402 HOH HOH . E 5 HOH A 123 1417 1417 HOH HOH . E 5 HOH A 124 1419 1419 HOH HOH . E 5 HOH A 125 1421 1421 HOH HOH . E 5 HOH A 126 1441 1441 HOH HOH . E 5 HOH A 127 1448 1448 HOH HOH . E 5 HOH A 128 1459 1459 HOH HOH . E 5 HOH A 129 1461 1461 HOH HOH . E 5 HOH A 130 1463 1463 HOH HOH . E 5 HOH A 131 1475 1475 HOH HOH . E 5 HOH A 132 1486 1486 HOH HOH . E 5 HOH A 133 1503 1503 HOH HOH . E 5 HOH A 134 1515 1515 HOH HOH . E 5 HOH A 135 1516 1516 HOH HOH . E 5 HOH A 136 1523 1523 HOH HOH . E 5 HOH A 137 1534 1534 HOH HOH . E 5 HOH A 138 1535 1535 HOH HOH . E 5 HOH A 139 1538 1538 HOH HOH . E 5 HOH A 140 1547 1547 HOH HOH . E 5 HOH A 141 1555 1555 HOH HOH . E 5 HOH A 142 1562 1562 HOH HOH . E 5 HOH A 143 1565 1565 HOH HOH . E 5 HOH A 144 1566 1566 HOH HOH . E 5 HOH A 145 1572 1572 HOH HOH . E 5 HOH A 146 1581 1581 HOH HOH . E 5 HOH A 147 1593 1593 HOH HOH . E 5 HOH A 148 1594 1594 HOH HOH . E 5 HOH A 149 1595 1595 HOH HOH . E 5 HOH A 150 1600 1600 HOH HOH . E 5 HOH A 151 1610 1610 HOH HOH . E 5 HOH A 152 1612 1612 HOH HOH . E 5 HOH A 153 1619 1619 HOH HOH . E 5 HOH A 154 1627 1627 HOH HOH . E 5 HOH A 155 1630 1630 HOH HOH . E 5 HOH A 156 1631 1631 HOH HOH . E 5 HOH A 157 1637 1637 HOH HOH . E 5 HOH A 158 1638 1638 HOH HOH . E 5 HOH A 159 1640 1640 HOH HOH . E 5 HOH A 160 1645 1645 HOH HOH . E 5 HOH A 161 1651 1651 HOH HOH . E 5 HOH A 162 1658 1658 HOH HOH . E 5 HOH A 163 1672 1672 HOH HOH . E 5 HOH A 164 1689 1689 HOH HOH . E 5 HOH A 165 1690 1690 HOH HOH . E 5 HOH A 166 1694 1694 HOH HOH . E 5 HOH A 167 1699 1699 HOH HOH . E 5 HOH A 168 1700 1700 HOH HOH . E 5 HOH A 169 1706 1706 HOH HOH . E 5 HOH A 170 1709 1709 HOH HOH . E 5 HOH A 171 1716 1716 HOH HOH . E 5 HOH A 172 1718 1718 HOH HOH . E 5 HOH A 173 1724 1724 HOH HOH . E 5 HOH A 174 1731 1731 HOH HOH . E 5 HOH A 175 1733 1733 HOH HOH . E 5 HOH A 176 1738 1738 HOH HOH . E 5 HOH A 177 1739 1739 HOH HOH . E 5 HOH A 178 1757 1757 HOH HOH . E 5 HOH A 179 1772 1772 HOH HOH . E 5 HOH A 180 1776 1776 HOH HOH . E 5 HOH A 181 1782 1782 HOH HOH . E 5 HOH A 182 1784 1784 HOH HOH . E 5 HOH A 183 1792 1792 HOH HOH . E 5 HOH A 184 1795 1795 HOH HOH . E 5 HOH A 185 1805 1805 HOH HOH . E 5 HOH A 186 1820 1820 HOH HOH . E 5 HOH A 187 1832 1832 HOH HOH . E 5 HOH A 188 1836 1836 HOH HOH . E 5 HOH A 189 1839 1839 HOH HOH . E 5 HOH A 190 1840 1840 HOH HOH . E 5 HOH A 191 1844 1844 HOH HOH . E 5 HOH A 192 1851 1851 HOH HOH . E 5 HOH A 193 1853 1853 HOH HOH . E 5 HOH A 194 1857 1857 HOH HOH . E 5 HOH A 195 1859 1859 HOH HOH . E 5 HOH A 196 1894 1894 HOH HOH . E 5 HOH A 197 1897 1897 HOH HOH . E 5 HOH A 198 1906 1906 HOH HOH . E 5 HOH A 199 1932 1932 HOH HOH . E 5 HOH A 200 1936 1936 HOH HOH . E 5 HOH A 201 1954 1954 HOH HOH . E 5 HOH A 202 1958 1958 HOH HOH . E 5 HOH A 203 1977 1977 HOH HOH . E 5 HOH A 204 1980 1980 HOH HOH . E 5 HOH A 205 1987 1987 HOH HOH . E 5 HOH A 206 1999 1999 HOH HOH . E 5 HOH A 207 2015 2015 HOH HOH . E 5 HOH A 208 2026 2026 HOH HOH . E 5 HOH A 209 2041 2041 HOH HOH . E 5 HOH A 210 2055 2055 HOH HOH . E 5 HOH A 211 2057 2057 HOH HOH . E 5 HOH A 212 2060 2060 HOH HOH . E 5 HOH A 213 2065 2065 HOH HOH . E 5 HOH A 214 2070 2070 HOH HOH . E 5 HOH A 215 2073 2073 HOH HOH . E 5 HOH A 216 2085 2085 HOH HOH . E 5 HOH A 217 2093 2093 HOH HOH . E 5 HOH A 218 2095 2095 HOH HOH . E 5 HOH A 219 2102 2102 HOH HOH . E 5 HOH A 220 2103 2103 HOH HOH . E 5 HOH A 221 2107 2107 HOH HOH . E 5 HOH A 222 2110 2110 HOH HOH . E 5 HOH A 223 2137 2137 HOH HOH . E 5 HOH A 224 2140 2140 HOH HOH . E 5 HOH A 225 2151 2151 HOH HOH . E 5 HOH A 226 2159 2159 HOH HOH . E 5 HOH A 227 2162 2162 HOH HOH . E 5 HOH A 228 2163 2163 HOH HOH . E 5 HOH A 229 2166 2166 HOH HOH . E 5 HOH A 230 2167 2167 HOH HOH . E 5 HOH A 231 2168 2168 HOH HOH . E 5 HOH A 232 2180 2180 HOH HOH . E 5 HOH A 233 2198 2198 HOH HOH . E 5 HOH A 234 2216 2216 HOH HOH . E 5 HOH A 235 2227 2227 HOH HOH . E 5 HOH A 236 2247 2247 HOH HOH . E 5 HOH A 237 2250 2250 HOH HOH . E 5 HOH A 238 2259 2259 HOH HOH . E 5 HOH A 239 2274 2274 HOH HOH . E 5 HOH A 240 2283 2283 HOH HOH . E 5 HOH A 241 2307 2307 HOH HOH . E 5 HOH A 242 2308 2308 HOH HOH . E 5 HOH A 243 2327 2327 HOH HOH . E 5 HOH A 244 2330 2330 HOH HOH . E 5 HOH A 245 2331 2331 HOH HOH . E 5 HOH A 246 2339 2339 HOH HOH . E 5 HOH A 247 2344 2344 HOH HOH . E 5 HOH A 248 2354 2354 HOH HOH . E 5 HOH A 249 2357 2357 HOH HOH . E 5 HOH A 250 2364 2364 HOH HOH . E 5 HOH A 251 2387 2387 HOH HOH . E 5 HOH A 252 2404 2404 HOH HOH . E 5 HOH A 253 2451 2451 HOH HOH . E 5 HOH A 254 2459 2459 HOH HOH . E 5 HOH A 255 2467 2467 HOH HOH . E 5 HOH A 256 2483 2483 HOH HOH . E 5 HOH A 257 2518 2518 HOH HOH . E 5 HOH A 258 2520 2520 HOH HOH . E 5 HOH A 259 2529 2529 HOH HOH . E 5 HOH A 260 2533 2533 HOH HOH . E 5 HOH A 261 2535 2535 HOH HOH . E 5 HOH A 262 2539 2539 HOH HOH . E 5 HOH A 263 2540 2540 HOH HOH . E 5 HOH A 264 2602 2602 HOH HOH . E 5 HOH A 265 2611 2611 HOH HOH . E 5 HOH A 266 2625 2625 HOH HOH . E 5 HOH A 267 2643 2643 HOH HOH . E 5 HOH A 268 2657 2657 HOH HOH . E 5 HOH A 269 2660 2660 HOH HOH . E 5 HOH A 270 2669 2669 HOH HOH . E 5 HOH A 271 2677 2677 HOH HOH . E 5 HOH A 272 2688 2688 HOH HOH . E 5 HOH A 273 2735 2735 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 18.173 -0.174 136.342 0.79 16.98 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 17.958 -0.803 137.589 0.79 18.82 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 17.024 0.783 136.022 0.79 15.75 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 16.847 1.76 137.034 0.79 16.34 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 15.734 -0.006 135.817 0.79 14.42 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 14.722 0.866 135.355 0.79 11.67 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #