data_4Y49
#
_model_server_result.job_id            Uq_S5aaHgQaOvPYvD7RyIA 
_model_server_result.datetime_utc      '2024-11-18 13:45:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y49 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":301}' 
#
_entry.id    4Y49 
#
_exptl.entry_id    4Y49 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              825.57 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CARBOXYMETHYL COENZYME *A' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Y49 
_cell.length_a            111.723 
_cell.length_b            146.486 
_cell.length_c            254.107 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y49 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
? tetrameric 4 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,M,N,O 1 1 
E,F,G,H,P,Q,R 2 1 
I,J,K,L,S,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 N N N 
? 6 Q N N 
? 6 T N N 
#
_chem_comp.formula           'C23 H38 N7 O18 P3 S' 
_chem_comp.formula_weight    825.57 
_chem_comp.id                CMC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CARBOXYMETHYL COENZYME *A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A CMC sing 161 n y 
N1A C6A CMC doub 162 n y 
C2A N3A CMC doub 163 n y 
C2A H2A CMC sing 164 n n 
N3A C4A CMC sing 165 n y 
C4A C5A CMC doub 166 n y 
C4A N9A CMC sing 167 n y 
C5A C6A CMC sing 168 n y 
C5A N7A CMC sing 169 n y 
C6A N6A CMC sing 170 n n 
N6A H61A CMC sing 171 n n 
N6A H62A CMC sing 172 n n 
N7A C8A CMC doub 173 n y 
C8A N9A CMC sing 174 n y 
C8A H8A CMC sing 175 n n 
N9A C1B CMC sing 176 n n 
C1B C2B CMC sing 177 n n 
C1B O4B CMC sing 178 n n 
C1B H1B CMC sing 179 n n 
C2B O2B CMC sing 180 n n 
C2B C3B CMC sing 181 n n 
C2B H2B CMC sing 182 n n 
O2B HO2A CMC sing 183 n n 
C3B O3B CMC sing 184 n n 
C3B C4B CMC sing 185 n n 
C3B H3B CMC sing 186 n n 
O3B P3B CMC sing 187 n n 
P3B O7A CMC doub 188 n n 
P3B O8A CMC sing 189 n n 
P3B O9A CMC sing 190 n n 
O8A HOA8 CMC sing 191 n n 
O9A HOA9 CMC sing 192 n n 
C4B O4B CMC sing 193 n n 
C4B C5B CMC sing 194 n n 
C4B H4B CMC sing 195 n n 
C5B O5B CMC sing 196 n n 
C5B H51A CMC sing 197 n n 
C5B H52A CMC sing 198 n n 
O5B P1A CMC sing 199 n n 
P1A O1A CMC doub 200 n n 
P1A O2A CMC sing 201 n n 
P1A O3A CMC sing 202 n n 
O2A HOA2 CMC sing 203 n n 
O3A P2A CMC sing 204 n n 
P2A O4A CMC doub 205 n n 
P2A O5A CMC sing 206 n n 
P2A O6A CMC sing 207 n n 
O5A HOA5 CMC sing 208 n n 
O6A CCP CMC sing 209 n n 
CBP CCP CMC sing 210 n n 
CBP CDP CMC sing 211 n n 
CBP CEP CMC sing 212 n n 
CBP CAP CMC sing 213 n n 
CCP H121 CMC sing 214 n n 
CCP H122 CMC sing 215 n n 
CDP H131 CMC sing 216 n n 
CDP H132 CMC sing 217 n n 
CDP H133 CMC sing 218 n n 
CEP H141 CMC sing 219 n n 
CEP H142 CMC sing 220 n n 
CEP H143 CMC sing 221 n n 
CAP OAP CMC sing 222 n n 
CAP C9P CMC sing 223 n n 
CAP H10 CMC sing 224 n n 
OAP HO1 CMC sing 225 n n 
C9P O9P CMC doub 226 n n 
C9P N8P CMC sing 227 n n 
N8P C7P CMC sing 228 n n 
N8P HN8 CMC sing 229 n n 
C7P C6P CMC sing 230 n n 
C7P H71 CMC sing 231 n n 
C7P H72 CMC sing 232 n n 
C6P C5P CMC sing 233 n n 
C6P H61 CMC sing 234 n n 
C6P H62 CMC sing 235 n n 
C5P O5P CMC doub 236 n n 
C5P N4P CMC sing 237 n n 
N4P C3P CMC sing 238 n n 
N4P HN4 CMC sing 239 n n 
C3P C2P CMC sing 240 n n 
C3P H31 CMC sing 241 n n 
C3P H32 CMC sing 242 n n 
C2P S1P CMC sing 243 n n 
C2P H21 CMC sing 244 n n 
C2P H22 CMC sing 245 n n 
S1P C1 CMC sing 246 n n 
C1 C2 CMC sing 247 n n 
C1 H11 CMC sing 248 n n 
C1 H12 CMC sing 249 n n 
C2 O21 CMC doub 250 n n 
C2 O22 CMC sing 251 n n 
O22 HO22 CMC sing 252 n n 
#
_atom_sites.entry_id                     4Y49 
_atom_sites.fract_transf_matrix[1][1]    0.008951 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006827 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 G4P A 1 901 1 G4P G4P . 
N 6 CMC B 1 301 1 CMC ACO . 
O 7 ACO C 1 201 1 ACO BCO . 
P 5 G4P G 1 901 2 G4P G4P . 
Q 6 CMC H 1 301 1 CMC ACO . 
R 7 ACO I 1 201 1 ACO BCO . 
S 5 G4P M 1 901 3 G4P G4P . 
T 6 CMC N 1 301 1 CMC ACO . 
U 7 ACO O 1 201 1 ACO BCO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A CMC . . . Q 6 5.707 -6.532 505.382 0 20 ? N1A CMC 301 H 1 
HETATM 2 C C2A CMC . . . Q 6 6.15 -7.232 504.326 0 20 ? C2A CMC 301 H 1 
HETATM 3 N N3A CMC . . . Q 6 6.977 -8.283 504.452 0 20 ? N3A CMC 301 H 1 
HETATM 4 C C4A CMC . . . Q 6 7.414 -8.696 505.668 0 20 ? C4A CMC 301 H 1 
HETATM 5 C C5A CMC . . . Q 6 7.001 -8.025 506.802 0 20 ? C5A CMC 301 H 1 
HETATM 6 C C6A CMC . . . Q 6 6.087 -6.867 506.633 0 20 ? C6A CMC 301 H 1 
HETATM 7 N N6A CMC . . . Q 6 5.645 -6.166 507.704 0 20 ? N6A CMC 301 H 1 
HETATM 8 N N7A CMC . . . Q 6 7.57 -8.627 507.865 0 20 ? N7A CMC 301 H 1 
HETATM 9 C C8A CMC . . . Q 6 8.32 -9.651 507.395 0 20 ? C8A CMC 301 H 1 
HETATM 10 N N9A CMC . . . Q 6 8.221 -9.687 506.058 0 20 ? N9A CMC 301 H 1 
HETATM 11 C C1B CMC . . . Q 6 8.887 -10.658 505.154 0 20 ? C1B CMC 301 H 1 
HETATM 12 C C2B CMC . . . Q 6 10.379 -10.729 505.428 0 20 ? C2B CMC 301 H 1 
HETATM 13 O O2B CMC . . . Q 6 11.087 -9.818 504.583 0 20 ? O2B CMC 301 H 1 
HETATM 14 C C3B CMC . . . Q 6 10.743 -12.162 505.102 0 20 ? C3B CMC 301 H 1 
HETATM 15 O O3B CMC . . . Q 6 11.254 -12.224 503.774 0 20 ? O3B CMC 301 H 1 
HETATM 16 P P3B CMC . . . Q 6 12.594 -13.049 503.436 0 20 ? P3B CMC 301 H 1 
HETATM 17 O O7A CMC . . . Q 6 13.667 -12.345 504.234 0 20 ? O7A CMC 301 H 1 
HETATM 18 O O8A CMC . . . Q 6 12.288 -14.452 503.902 0 20 ? O8A CMC 301 H 1 
HETATM 19 O O9A CMC . . . Q 6 12.738 -12.905 501.94 0 20 ? O9A CMC 301 H 1 
HETATM 20 C C4B CMC . . . Q 6 9.436 -12.936 505.19 0 20 ? C4B CMC 301 H 1 
HETATM 21 O O4B CMC . . . Q 6 8.392 -11.977 505.385 0 20 ? O4B CMC 301 H 1 
HETATM 22 C C5B CMC . . . Q 6 9.437 -13.918 506.354 0 20 ? C5B CMC 301 H 1 
HETATM 23 O O5B CMC . . . Q 6 10.107 -13.329 507.465 0 20 ? O5B CMC 301 H 1 
HETATM 24 P P1A CMC . . . Q 6 9.551 -13.497 508.966 0 20 ? P1A CMC 301 H 1 
HETATM 25 O O1A CMC . . . Q 6 10.624 -12.978 509.895 0 20 ? O1A CMC 301 H 1 
HETATM 26 O O2A CMC . . . Q 6 9.016 -14.903 509.132 0 20 ? O2A CMC 301 H 1 
HETATM 27 O O3A CMC . . . Q 6 8.301 -12.481 508.992 0 20 ? O3A CMC 301 H 1 
HETATM 28 P P2A CMC . . . Q 6 7.612 -12.024 510.375 0 20 ? P2A CMC 301 H 1 
HETATM 29 O O4A CMC . . . Q 6 7.174 -10.588 510.216 0 20 ? O4A CMC 301 H 1 
HETATM 30 O O5A CMC . . . Q 6 8.513 -12.414 511.521 0 20 ? O5A CMC 301 H 1 
HETATM 31 O O6A CMC . . . Q 6 6.288 -12.934 510.475 0 20 ? O6A CMC 301 H 1 
HETATM 32 C CBP CMC . . . Q 6 3.902 -12.684 510.516 0 20 ? CBP CMC 301 H 1 
HETATM 33 C CCP CMC . . . Q 6 5.155 -12.68 509.648 0 20 ? CCP CMC 301 H 1 
HETATM 34 C CDP CMC . . . Q 6 2.684 -12.483 509.624 0 20 ? CDP CMC 301 H 1 
HETATM 35 C CEP CMC . . . Q 6 3.801 -14.022 511.236 0 20 ? CEP CMC 301 H 1 
HETATM 36 C CAP CMC . . . Q 6 4.013 -11.556 511.534 0 20 ? CAP CMC 301 H 1 
HETATM 37 O OAP CMC . . . Q 6 4.123 -10.305 510.847 0 20 ? OAP CMC 301 H 1 
HETATM 38 C C9P CMC . . . Q 6 2.805 -11.527 512.426 0 20 ? C9P CMC 301 H 1 
HETATM 39 O O9P CMC . . . Q 6 2.825 -12.091 513.508 0 20 ? O9P CMC 301 H 1 
HETATM 40 N N8P CMC . . . Q 6 1.8 -10.897 511.996 0 20 ? N8P CMC 301 H 1 
HETATM 41 C C7P CMC . . . Q 6 0.516 -10.72 512.66 0 20 ? C7P CMC 301 H 1 
HETATM 42 C C6P CMC . . . Q 6 -0.068 -12.123 512.759 0 20 ? C6P CMC 301 H 1 
HETATM 43 C C5P CMC . . . Q 6 -0.216 -12.7 511.372 0 20 ? C5P CMC 301 H 1 
HETATM 44 O O5P CMC . . . Q 6 -0.464 -11.977 510.422 0 20 ? O5P CMC 301 H 1 
HETATM 45 N N4P CMC . . . Q 6 -0.071 -13.946 511.27 0 20 ? N4P CMC 301 H 1 
HETATM 46 C C3P CMC . . . Q 6 -0.164 -14.748 510.06 0 20 ? C3P CMC 301 H 1 
HETATM 47 C C2P CMC . . . Q 6 -1.643 -14.732 509.698 0 20 ? C2P CMC 301 H 1 
HETATM 48 S S1P CMC . . . Q 6 -1.909 -15.762 508.295 0 20 ? S1P CMC 301 H 1 
HETATM 49 C C1 CMC . . . Q 6 -1.287 -17.377 508.627 0 20 ? C1 CMC 301 H 1 
HETATM 50 C C2 CMC . . . Q 6 -1.925 -17.913 509.887 0 20 ? C2 CMC 301 H 1 
HETATM 51 O O21 CMC . . . Q 6 -1.675 -19.042 510.276 0 20 ? O21 CMC 301 H 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           51 
#