data_4Y49 # _model_server_result.job_id a3au5BIcmPjZrnjfgyJZFw _model_server_result.datetime_utc '2024-11-18 13:51:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":301}' # _entry.id 4Y49 # _exptl.entry_id 4Y49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 825.57 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBOXYMETHYL COENZYME *A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y49 _cell.length_a 111.723 _cell.length_b 146.486 _cell.length_c 254.107 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 ? tetrameric 4 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,N,O 1 1 E,F,G,H,P,Q,R 2 1 I,J,K,L,S,T,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 N N N ? 6 Q N N ? 6 T N N # _chem_comp.formula 'C23 H38 N7 O18 P3 S' _chem_comp.formula_weight 825.57 _chem_comp.id CMC _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBOXYMETHYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CMC sing 161 n y N1A C6A CMC doub 162 n y C2A N3A CMC doub 163 n y C2A H2A CMC sing 164 n n N3A C4A CMC sing 165 n y C4A C5A CMC doub 166 n y C4A N9A CMC sing 167 n y C5A C6A CMC sing 168 n y C5A N7A CMC sing 169 n y C6A N6A CMC sing 170 n n N6A H61A CMC sing 171 n n N6A H62A CMC sing 172 n n N7A C8A CMC doub 173 n y C8A N9A CMC sing 174 n y C8A H8A CMC sing 175 n n N9A C1B CMC sing 176 n n C1B C2B CMC sing 177 n n C1B O4B CMC sing 178 n n C1B H1B CMC sing 179 n n C2B O2B CMC sing 180 n n C2B C3B CMC sing 181 n n C2B H2B CMC sing 182 n n O2B HO2A CMC sing 183 n n C3B O3B CMC sing 184 n n C3B C4B CMC sing 185 n n C3B H3B CMC sing 186 n n O3B P3B CMC sing 187 n n P3B O7A CMC doub 188 n n P3B O8A CMC sing 189 n n P3B O9A CMC sing 190 n n O8A HOA8 CMC sing 191 n n O9A HOA9 CMC sing 192 n n C4B O4B CMC sing 193 n n C4B C5B CMC sing 194 n n C4B H4B CMC sing 195 n n C5B O5B CMC sing 196 n n C5B H51A CMC sing 197 n n C5B H52A CMC sing 198 n n O5B P1A CMC sing 199 n n P1A O1A CMC doub 200 n n P1A O2A CMC sing 201 n n P1A O3A CMC sing 202 n n O2A HOA2 CMC sing 203 n n O3A P2A CMC sing 204 n n P2A O4A CMC doub 205 n n P2A O5A CMC sing 206 n n P2A O6A CMC sing 207 n n O5A HOA5 CMC sing 208 n n O6A CCP CMC sing 209 n n CBP CCP CMC sing 210 n n CBP CDP CMC sing 211 n n CBP CEP CMC sing 212 n n CBP CAP CMC sing 213 n n CCP H121 CMC sing 214 n n CCP H122 CMC sing 215 n n CDP H131 CMC sing 216 n n CDP H132 CMC sing 217 n n CDP H133 CMC sing 218 n n CEP H141 CMC sing 219 n n CEP H142 CMC sing 220 n n CEP H143 CMC sing 221 n n CAP OAP CMC sing 222 n n CAP C9P CMC sing 223 n n CAP H10 CMC sing 224 n n OAP HO1 CMC sing 225 n n C9P O9P CMC doub 226 n n C9P N8P CMC sing 227 n n N8P C7P CMC sing 228 n n N8P HN8 CMC sing 229 n n C7P C6P CMC sing 230 n n C7P H71 CMC sing 231 n n C7P H72 CMC sing 232 n n C6P C5P CMC sing 233 n n C6P H61 CMC sing 234 n n C6P H62 CMC sing 235 n n C5P O5P CMC doub 236 n n C5P N4P CMC sing 237 n n N4P C3P CMC sing 238 n n N4P HN4 CMC sing 239 n n C3P C2P CMC sing 240 n n C3P H31 CMC sing 241 n n C3P H32 CMC sing 242 n n C2P S1P CMC sing 243 n n C2P H21 CMC sing 244 n n C2P H22 CMC sing 245 n n S1P C1 CMC sing 246 n n C1 C2 CMC sing 247 n n C1 H11 CMC sing 248 n n C1 H12 CMC sing 249 n n C2 O21 CMC doub 250 n n C2 O22 CMC sing 251 n n O22 HO22 CMC sing 252 n n # _atom_sites.entry_id 4Y49 _atom_sites.fract_transf_matrix[1][1] 0.008951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 G4P A 1 901 1 G4P G4P . N 6 CMC B 1 301 1 CMC ACO . O 7 ACO C 1 201 1 ACO BCO . P 5 G4P G 1 901 2 G4P G4P . Q 6 CMC H 1 301 1 CMC ACO . R 7 ACO I 1 201 1 ACO BCO . S 5 G4P M 1 901 3 G4P G4P . T 6 CMC N 1 301 1 CMC ACO . U 7 ACO O 1 201 1 ACO BCO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CMC . . . T 6 61.47 79.74 595.534 0 20 ? N1A CMC 301 N 1 HETATM 2 C C2A CMC . . . T 6 61.926 80.359 596.634 0 20 ? C2A CMC 301 N 1 HETATM 3 N N3A CMC . . . T 6 62.792 81.383 596.58 0 20 ? N3A CMC 301 N 1 HETATM 4 C C4A CMC . . . T 6 63.258 81.854 595.396 0 20 ? C4A CMC 301 N 1 HETATM 5 C C5A CMC . . . T 6 62.832 81.266 594.22 0 20 ? C5A CMC 301 N 1 HETATM 6 C C6A CMC . . . T 6 61.874 80.136 594.309 0 20 ? C6A CMC 301 N 1 HETATM 7 N N6A CMC . . . T 6 61.42 79.519 593.191 0 20 ? N6A CMC 301 N 1 HETATM 8 N N7A CMC . . . T 6 63.431 81.908 593.199 0 20 ? N7A CMC 301 N 1 HETATM 9 C C8A CMC . . . T 6 64.213 82.872 593.735 0 20 ? C8A CMC 301 N 1 HETATM 10 N N9A CMC . . . T 6 64.104 82.836 595.069 0 20 ? N9A CMC 301 N 1 HETATM 11 C C1B CMC . . . T 6 64.807 83.738 596.015 0 20 ? C1B CMC 301 N 1 HETATM 12 C C2B CMC . . . T 6 66.307 83.665 595.791 0 20 ? C2B CMC 301 N 1 HETATM 13 O O2B CMC . . . T 6 66.908 82.759 596.719 0 20 ? O2B CMC 301 N 1 HETATM 14 C C3B CMC . . . T 6 66.799 85.078 596.021 0 20 ? C3B CMC 301 N 1 HETATM 15 O O3B CMC . . . T 6 67.341 85.164 597.337 0 20 ? O3B CMC 301 N 1 HETATM 16 P P3B CMC . . . T 6 68.511 86.21 597.698 0 20 ? P3B CMC 301 N 1 HETATM 17 O O7A CMC . . . T 6 69.698 85.71 596.911 0 20 ? O7A CMC 301 N 1 HETATM 18 O O8A CMC . . . T 6 67.969 87.541 597.235 0 20 ? O8A CMC 301 N 1 HETATM 19 O O9A CMC . . . T 6 68.664 86.084 599.195 0 20 ? O9A CMC 301 N 1 HETATM 20 C C4B CMC . . . T 6 65.565 85.962 595.898 0 20 ? C4B CMC 301 N 1 HETATM 21 O O4B CMC . . . T 6 64.433 85.095 595.764 0 20 ? O4B CMC 301 N 1 HETATM 22 C C5B CMC . . . T 6 65.635 86.925 594.713 0 20 ? C5B CMC 301 N 1 HETATM 23 O O5B CMC . . . T 6 65.485 86.241 593.467 0 20 ? O5B CMC 301 N 1 HETATM 24 P P1A CMC . . . T 6 65.581 87.05 592.074 0 20 ? P1A CMC 301 N 1 HETATM 25 O O1A CMC . . . T 6 66.563 86.324 591.186 0 20 ? O1A CMC 301 N 1 HETATM 26 O O2A CMC . . . T 6 65.82 88.5 592.417 0 20 ? O2A CMC 301 N 1 HETATM 27 O O3A CMC . . . T 6 64.113 86.891 591.43 0 20 ? O3A CMC 301 N 1 HETATM 28 P P2A CMC . . . T 6 63.775 85.681 590.422 0 20 ? P2A CMC 301 N 1 HETATM 29 O O4A CMC . . . T 6 63.846 84.374 591.172 0 20 ? O4A CMC 301 N 1 HETATM 30 O O5A CMC . . . T 6 64.578 85.882 589.16 0 20 ? O5A CMC 301 N 1 HETATM 31 O O6A CMC . . . T 6 62.236 85.968 590.064 0 20 ? O6A CMC 301 N 1 HETATM 32 C CBP CMC . . . T 6 59.895 86.039 590.406 0 20 ? CBP CMC 301 N 1 HETATM 33 C CCP CMC . . . T 6 61.253 86.06 591.088 0 20 ? CCP CMC 301 N 1 HETATM 34 C CDP CMC . . . T 6 58.812 85.774 591.443 0 20 ? CDP CMC 301 N 1 HETATM 35 C CEP CMC . . . T 6 59.656 87.381 589.728 0 20 ? CEP CMC 301 N 1 HETATM 36 C CAP CMC . . . T 6 59.928 84.923 589.37 0 20 ? CAP CMC 301 N 1 HETATM 37 O OAP CMC . . . T 6 60.04 83.662 590.039 0 20 ? OAP CMC 301 N 1 HETATM 38 C C9P CMC . . . T 6 58.68 84.936 588.539 0 20 ? C9P CMC 301 N 1 HETATM 39 O O9P CMC . . . T 6 58.653 85.541 587.48 0 20 ? O9P CMC 301 N 1 HETATM 40 N N8P CMC . . . T 6 57.694 84.297 588.995 0 20 ? N8P CMC 301 N 1 HETATM 41 C C7P CMC . . . T 6 56.381 84.155 588.384 0 20 ? C7P CMC 301 N 1 HETATM 42 C C6P CMC . . . T 6 55.802 85.564 588.379 0 20 ? C6P CMC 301 N 1 HETATM 43 C C5P CMC . . . T 6 55.608 86.026 589.802 0 20 ? C5P CMC 301 N 1 HETATM 44 O O5P CMC . . . T 6 55.374 85.223 590.69 0 20 ? O5P CMC 301 N 1 HETATM 45 N N4P CMC . . . T 6 55.701 87.265 590.001 0 20 ? N4P CMC 301 N 1 HETATM 46 C C3P CMC . . . T 6 55.555 87.973 591.263 0 20 ? C3P CMC 301 N 1 HETATM 47 C C2P CMC . . . T 6 54.057 87.963 591.543 0 20 ? C2P CMC 301 N 1 HETATM 48 S S1P CMC . . . T 6 53.712 89.022 592.907 0 20 ? S1P CMC 301 N 1 HETATM 49 C C1 CMC . . . T 6 54.438 90.6 592.613 0 20 ? C1 CMC 301 N 1 HETATM 50 C C2 CMC . . . T 6 53.991 91.119 591.268 0 20 ? C2 CMC 301 N 1 HETATM 51 O O21 CMC . . . T 6 54.353 92.219 590.88 0 20 ? O21 CMC 301 N 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #