data_4Y5S # _model_server_result.job_id 7KqHIM2RSoOhEk14voclFA _model_server_result.datetime_utc '2024-10-19 16:45:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4Y5S # _exptl.entry_id 4Y5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.98 _cell.angle_gamma 90 _cell.entry_id 4Y5S _cell.length_a 60.532 _cell.length_b 45.659 _cell.length_c 105.201 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 132 A HIS 133 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A OD1 ASP 134 A ASP 135 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 A OD2 ASP 134 A ASP 135 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc4 A NE2 HIS 208 A HIS 209 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc5 C O2 AKG . A AKG 401 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 C O5 AKG . A AKG 401 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 D FE FE2 . A FE2 402 1_555 H O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc8 B NE2 HIS 132 B HIS 133 1_555 F FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc9 B OD1 ASP 134 B ASP 135 1_555 F FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc10 B OD2 ASP 134 B ASP 135 1_555 F FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc11 B OE1 GLU 185 B GLU 186 1_555 G CO CO . B CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc12 B OE2 GLU 185 B GLU 186 1_555 G CO CO . B CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc13 B OD1 ASP 187 B ASP 188 1_555 G CO CO . B CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc14 B OD2 ASP 187 B ASP 188 1_555 G CO CO . B CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc15 B NE2 HIS 208 B HIS 209 1_555 F FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc16 E O1 AKG . B AKG 401 1_555 F FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc17 E O5 AKG . B AKG 401 1_555 F FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc18 F FE FE2 . B FE2 402 1_555 I O HOH . B HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Y5S _atom_sites.fract_transf_matrix[1][1] 0.01652 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002907 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009652 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AKG A 1 401 401 AKG AKG . D 3 FE2 A 1 402 501 FE2 FE2 . E 2 AKG B 1 401 401 AKG AKG . F 3 FE2 B 1 402 501 FE2 FE2 . G 4 CO B 1 403 2 CO Co . H 5 HOH A 1 501 133 HOH HOH . H 5 HOH A 2 502 69 HOH HOH . H 5 HOH A 3 503 52 HOH HOH . H 5 HOH A 4 504 126 HOH HOH . H 5 HOH A 5 505 4 HOH HOH . H 5 HOH A 6 506 141 HOH HOH . H 5 HOH A 7 507 57 HOH HOH . H 5 HOH A 8 508 33 HOH HOH . H 5 HOH A 9 509 48 HOH HOH . H 5 HOH A 10 510 104 HOH HOH . H 5 HOH A 11 511 15 HOH HOH . H 5 HOH A 12 512 131 HOH HOH . H 5 HOH A 13 513 49 HOH HOH . H 5 HOH A 14 514 119 HOH HOH . H 5 HOH A 15 515 16 HOH HOH . H 5 HOH A 16 516 132 HOH HOH . H 5 HOH A 17 517 31 HOH HOH . H 5 HOH A 18 518 70 HOH HOH . H 5 HOH A 19 519 63 HOH HOH . H 5 HOH A 20 520 11 HOH HOH . H 5 HOH A 21 521 7 HOH HOH . H 5 HOH A 22 522 6 HOH HOH . H 5 HOH A 23 523 129 HOH HOH . H 5 HOH A 24 524 32 HOH HOH . H 5 HOH A 25 525 40 HOH HOH . H 5 HOH A 26 526 67 HOH HOH . H 5 HOH A 27 527 51 HOH HOH . H 5 HOH A 28 528 85 HOH HOH . H 5 HOH A 29 529 29 HOH HOH . H 5 HOH A 30 530 20 HOH HOH . H 5 HOH A 31 531 10 HOH HOH . H 5 HOH A 32 532 21 HOH HOH . H 5 HOH A 33 533 24 HOH HOH . H 5 HOH A 34 534 9 HOH HOH . H 5 HOH A 35 535 37 HOH HOH . H 5 HOH A 36 536 42 HOH HOH . H 5 HOH A 37 537 76 HOH HOH . H 5 HOH A 38 538 71 HOH HOH . H 5 HOH A 39 539 81 HOH HOH . H 5 HOH A 40 540 53 HOH HOH . H 5 HOH A 41 541 84 HOH HOH . H 5 HOH A 42 542 34 HOH HOH . H 5 HOH A 43 543 25 HOH HOH . H 5 HOH A 44 544 102 HOH HOH . H 5 HOH A 45 545 55 HOH HOH . H 5 HOH A 46 546 106 HOH HOH . H 5 HOH A 47 547 115 HOH HOH . H 5 HOH A 48 548 28 HOH HOH . H 5 HOH A 49 549 61 HOH HOH . H 5 HOH A 50 550 111 HOH HOH . H 5 HOH A 51 551 39 HOH HOH . H 5 HOH A 52 552 120 HOH HOH . H 5 HOH A 53 553 122 HOH HOH . H 5 HOH A 54 554 41 HOH HOH . H 5 HOH A 55 555 125 HOH HOH . H 5 HOH A 56 556 91 HOH HOH . H 5 HOH A 57 557 80 HOH HOH . H 5 HOH A 58 558 92 HOH HOH . H 5 HOH A 59 559 2 HOH HOH . H 5 HOH A 60 560 144 HOH HOH . H 5 HOH A 61 561 73 HOH HOH . H 5 HOH A 62 562 93 HOH HOH . H 5 HOH A 63 563 22 HOH HOH . H 5 HOH A 64 564 103 HOH HOH . H 5 HOH A 65 565 107 HOH HOH . H 5 HOH A 66 566 145 HOH HOH . H 5 HOH A 67 567 46 HOH HOH . H 5 HOH A 68 568 138 HOH HOH . H 5 HOH A 69 569 95 HOH HOH . H 5 HOH A 70 570 124 HOH HOH . I 5 HOH B 1 501 116 HOH HOH . I 5 HOH B 2 502 83 HOH HOH . I 5 HOH B 3 503 142 HOH HOH . I 5 HOH B 4 504 139 HOH HOH . I 5 HOH B 5 505 65 HOH HOH . I 5 HOH B 6 506 100 HOH HOH . I 5 HOH B 7 507 47 HOH HOH . I 5 HOH B 8 508 79 HOH HOH . I 5 HOH B 9 509 5 HOH HOH . I 5 HOH B 10 510 1 HOH HOH . I 5 HOH B 11 511 60 HOH HOH . I 5 HOH B 12 512 118 HOH HOH . I 5 HOH B 13 513 3 HOH HOH . I 5 HOH B 14 514 8 HOH HOH . I 5 HOH B 15 515 58 HOH HOH . I 5 HOH B 16 516 14 HOH HOH . I 5 HOH B 17 517 18 HOH HOH . I 5 HOH B 18 518 36 HOH HOH . I 5 HOH B 19 519 112 HOH HOH . I 5 HOH B 20 520 110 HOH HOH . I 5 HOH B 21 521 17 HOH HOH . I 5 HOH B 22 522 82 HOH HOH . I 5 HOH B 23 523 74 HOH HOH . I 5 HOH B 24 524 146 HOH HOH . I 5 HOH B 25 525 19 HOH HOH . I 5 HOH B 26 526 66 HOH HOH . I 5 HOH B 27 527 13 HOH HOH . I 5 HOH B 28 528 44 HOH HOH . I 5 HOH B 29 529 64 HOH HOH . I 5 HOH B 30 530 114 HOH HOH . I 5 HOH B 31 531 121 HOH HOH . I 5 HOH B 32 532 62 HOH HOH . I 5 HOH B 33 533 68 HOH HOH . I 5 HOH B 34 534 89 HOH HOH . I 5 HOH B 35 535 54 HOH HOH . I 5 HOH B 36 536 35 HOH HOH . I 5 HOH B 37 537 77 HOH HOH . I 5 HOH B 38 538 127 HOH HOH . I 5 HOH B 39 539 94 HOH HOH . I 5 HOH B 40 540 38 HOH HOH . I 5 HOH B 41 541 43 HOH HOH . I 5 HOH B 42 542 59 HOH HOH . I 5 HOH B 43 543 72 HOH HOH . I 5 HOH B 44 544 136 HOH HOH . I 5 HOH B 45 545 86 HOH HOH . I 5 HOH B 46 546 30 HOH HOH . I 5 HOH B 47 547 45 HOH HOH . I 5 HOH B 48 548 23 HOH HOH . I 5 HOH B 49 549 56 HOH HOH . I 5 HOH B 50 550 128 HOH HOH . I 5 HOH B 51 551 88 HOH HOH . I 5 HOH B 52 552 101 HOH HOH . I 5 HOH B 53 553 50 HOH HOH . I 5 HOH B 54 554 135 HOH HOH . I 5 HOH B 55 555 143 HOH HOH . I 5 HOH B 56 556 87 HOH HOH . I 5 HOH B 57 557 27 HOH HOH . I 5 HOH B 58 558 97 HOH HOH . I 5 HOH B 59 559 78 HOH HOH . I 5 HOH B 60 560 12 HOH HOH . I 5 HOH B 61 561 96 HOH HOH . I 5 HOH B 62 562 75 HOH HOH . I 5 HOH B 63 563 90 HOH HOH . I 5 HOH B 64 564 134 HOH HOH . I 5 HOH B 65 565 140 HOH HOH . I 5 HOH B 66 566 99 HOH HOH . I 5 HOH B 67 567 108 HOH HOH . I 5 HOH B 68 568 117 HOH HOH . I 5 HOH B 69 569 137 HOH HOH . I 5 HOH B 70 570 98 HOH HOH . I 5 HOH B 71 571 26 HOH HOH . I 5 HOH B 72 572 113 HOH HOH . I 5 HOH B 73 573 130 HOH HOH . I 5 HOH B 74 574 105 HOH HOH . I 5 HOH B 75 575 109 HOH HOH . I 5 HOH B 76 576 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 115.25 _atom_site.Cartn_y -15.83 _atom_site.Cartn_z 149.563 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #