data_4Y5U
#
_model_server_result.job_id            yjehN6HqSwgwtmWXdj7x3w 
_model_server_result.datetime_utc      '2024-11-21 18:52:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    4Y5U 
#
_exptl.entry_id    4Y5U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Y5U 
_cell.length_a            66.152 
_cell.length_b            94.322 
_cell.length_c            179.362 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 GLN 181 A GLN 290 1_555 A O LYS 252 A LYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? 
covale ? covale2 A C GLY 531 A GLY 640 1_555 A N PTR 532 A PTR 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale3 A C PTR 532 A PTR 641 1_555 A N VAL 533 A VAL 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
covale ? covale4 B C GLY 531 B GLY 640 1_555 B N PTR 532 B PTR 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale5 B C PTR 532 B PTR 641 1_555 B N VAL 533 B VAL 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
metalc ? metalc1 C NI NI . A NI 701 1_555 D O HOH . A HOH 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? 
metalc ? metalc2 C NI NI . A NI 701 1_555 D O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4Y5U 
_atom_sites.fract_transf_matrix[1][1]    0.015117 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 701 1 NI NI . 
D 3 HOH A 1 801 6 HOH HOH . 
D 3 HOH A 2 802 44 HOH HOH . 
D 3 HOH A 3 803 11 HOH HOH . 
D 3 HOH A 4 804 73 HOH HOH . 
D 3 HOH A 5 805 175 HOH HOH . 
D 3 HOH A 6 806 42 HOH HOH . 
D 3 HOH A 7 807 26 HOH HOH . 
D 3 HOH A 8 808 129 HOH HOH . 
D 3 HOH A 9 809 130 HOH HOH . 
D 3 HOH A 10 810 21 HOH HOH . 
D 3 HOH A 11 811 74 HOH HOH . 
D 3 HOH A 12 812 66 HOH HOH . 
D 3 HOH A 13 813 2 HOH HOH . 
D 3 HOH A 14 814 22 HOH HOH . 
D 3 HOH A 15 815 100 HOH HOH . 
D 3 HOH A 16 816 179 HOH HOH . 
D 3 HOH A 17 817 161 HOH HOH . 
D 3 HOH A 18 818 1 HOH HOH . 
D 3 HOH A 19 819 5 HOH HOH . 
D 3 HOH A 20 820 7 HOH HOH . 
D 3 HOH A 21 821 10 HOH HOH . 
D 3 HOH A 22 822 15 HOH HOH . 
D 3 HOH A 23 823 18 HOH HOH . 
D 3 HOH A 24 824 23 HOH HOH . 
D 3 HOH A 25 825 24 HOH HOH . 
D 3 HOH A 26 826 25 HOH HOH . 
D 3 HOH A 27 827 27 HOH HOH . 
D 3 HOH A 28 828 28 HOH HOH . 
D 3 HOH A 29 829 30 HOH HOH . 
D 3 HOH A 30 830 31 HOH HOH . 
D 3 HOH A 31 831 39 HOH HOH . 
D 3 HOH A 32 832 40 HOH HOH . 
D 3 HOH A 33 833 41 HOH HOH . 
D 3 HOH A 34 834 43 HOH HOH . 
D 3 HOH A 35 835 45 HOH HOH . 
D 3 HOH A 36 836 46 HOH HOH . 
D 3 HOH A 37 837 48 HOH HOH . 
D 3 HOH A 38 838 50 HOH HOH . 
D 3 HOH A 39 839 53 HOH HOH . 
D 3 HOH A 40 840 56 HOH HOH . 
D 3 HOH A 41 841 60 HOH HOH . 
D 3 HOH A 42 842 61 HOH HOH . 
D 3 HOH A 43 843 63 HOH HOH . 
D 3 HOH A 44 844 68 HOH HOH . 
D 3 HOH A 45 845 70 HOH HOH . 
D 3 HOH A 46 846 72 HOH HOH . 
D 3 HOH A 47 847 75 HOH HOH . 
D 3 HOH A 48 848 76 HOH HOH . 
D 3 HOH A 49 849 77 HOH HOH . 
D 3 HOH A 50 850 78 HOH HOH . 
D 3 HOH A 51 851 80 HOH HOH . 
D 3 HOH A 52 852 81 HOH HOH . 
D 3 HOH A 53 853 86 HOH HOH . 
D 3 HOH A 54 854 88 HOH HOH . 
D 3 HOH A 55 855 90 HOH HOH . 
D 3 HOH A 56 856 92 HOH HOH . 
D 3 HOH A 57 857 94 HOH HOH . 
D 3 HOH A 58 858 97 HOH HOH . 
D 3 HOH A 59 859 98 HOH HOH . 
D 3 HOH A 60 860 102 HOH HOH . 
D 3 HOH A 61 861 103 HOH HOH . 
D 3 HOH A 62 862 105 HOH HOH . 
D 3 HOH A 63 863 106 HOH HOH . 
D 3 HOH A 64 864 108 HOH HOH . 
D 3 HOH A 65 865 111 HOH HOH . 
D 3 HOH A 66 866 117 HOH HOH . 
D 3 HOH A 67 867 118 HOH HOH . 
D 3 HOH A 68 868 122 HOH HOH . 
D 3 HOH A 69 869 123 HOH HOH . 
D 3 HOH A 70 870 124 HOH HOH . 
D 3 HOH A 71 871 125 HOH HOH . 
D 3 HOH A 72 872 128 HOH HOH . 
D 3 HOH A 73 873 133 HOH HOH . 
D 3 HOH A 74 874 137 HOH HOH . 
D 3 HOH A 75 875 138 HOH HOH . 
D 3 HOH A 76 876 139 HOH HOH . 
D 3 HOH A 77 877 140 HOH HOH . 
D 3 HOH A 78 878 142 HOH HOH . 
D 3 HOH A 79 879 143 HOH HOH . 
D 3 HOH A 80 880 144 HOH HOH . 
D 3 HOH A 81 881 147 HOH HOH . 
D 3 HOH A 82 882 149 HOH HOH . 
D 3 HOH A 83 883 150 HOH HOH . 
D 3 HOH A 84 884 151 HOH HOH . 
D 3 HOH A 85 885 152 HOH HOH . 
D 3 HOH A 86 886 153 HOH HOH . 
D 3 HOH A 87 887 154 HOH HOH . 
D 3 HOH A 88 888 156 HOH HOH . 
D 3 HOH A 89 889 157 HOH HOH . 
D 3 HOH A 90 890 158 HOH HOH . 
D 3 HOH A 91 891 159 HOH HOH . 
D 3 HOH A 92 892 163 HOH HOH . 
D 3 HOH A 93 893 165 HOH HOH . 
D 3 HOH A 94 894 168 HOH HOH . 
D 3 HOH A 95 895 170 HOH HOH . 
D 3 HOH A 96 896 172 HOH HOH . 
D 3 HOH A 97 897 174 HOH HOH . 
D 3 HOH A 98 898 178 HOH HOH . 
E 3 HOH B 1 701 51 HOH HOH . 
E 3 HOH B 2 702 127 HOH HOH . 
E 3 HOH B 3 703 29 HOH HOH . 
E 3 HOH B 4 704 54 HOH HOH . 
E 3 HOH B 5 705 37 HOH HOH . 
E 3 HOH B 6 706 57 HOH HOH . 
E 3 HOH B 7 707 173 HOH HOH . 
E 3 HOH B 8 708 69 HOH HOH . 
E 3 HOH B 9 709 135 HOH HOH . 
E 3 HOH B 10 710 164 HOH HOH . 
E 3 HOH B 11 711 3 HOH HOH . 
E 3 HOH B 12 712 4 HOH HOH . 
E 3 HOH B 13 713 8 HOH HOH . 
E 3 HOH B 14 714 9 HOH HOH . 
E 3 HOH B 15 715 12 HOH HOH . 
E 3 HOH B 16 716 13 HOH HOH . 
E 3 HOH B 17 717 14 HOH HOH . 
E 3 HOH B 18 718 16 HOH HOH . 
E 3 HOH B 19 719 17 HOH HOH . 
E 3 HOH B 20 720 19 HOH HOH . 
E 3 HOH B 21 721 20 HOH HOH . 
E 3 HOH B 22 722 32 HOH HOH . 
E 3 HOH B 23 723 33 HOH HOH . 
E 3 HOH B 24 724 34 HOH HOH . 
E 3 HOH B 25 725 35 HOH HOH . 
E 3 HOH B 26 726 36 HOH HOH . 
E 3 HOH B 27 727 38 HOH HOH . 
E 3 HOH B 28 728 49 HOH HOH . 
E 3 HOH B 29 729 52 HOH HOH . 
E 3 HOH B 30 730 55 HOH HOH . 
E 3 HOH B 31 731 58 HOH HOH . 
E 3 HOH B 32 732 59 HOH HOH . 
E 3 HOH B 33 733 62 HOH HOH . 
E 3 HOH B 34 734 64 HOH HOH . 
E 3 HOH B 35 735 65 HOH HOH . 
E 3 HOH B 36 736 67 HOH HOH . 
E 3 HOH B 37 737 71 HOH HOH . 
E 3 HOH B 38 738 79 HOH HOH . 
E 3 HOH B 39 739 82 HOH HOH . 
E 3 HOH B 40 740 83 HOH HOH . 
E 3 HOH B 41 741 84 HOH HOH . 
E 3 HOH B 42 742 87 HOH HOH . 
E 3 HOH B 43 743 89 HOH HOH . 
E 3 HOH B 44 744 91 HOH HOH . 
E 3 HOH B 45 745 93 HOH HOH . 
E 3 HOH B 46 746 95 HOH HOH . 
E 3 HOH B 47 747 96 HOH HOH . 
E 3 HOH B 48 748 99 HOH HOH . 
E 3 HOH B 49 749 101 HOH HOH . 
E 3 HOH B 50 750 104 HOH HOH . 
E 3 HOH B 51 751 107 HOH HOH . 
E 3 HOH B 52 752 109 HOH HOH . 
E 3 HOH B 53 753 110 HOH HOH . 
E 3 HOH B 54 754 112 HOH HOH . 
E 3 HOH B 55 755 113 HOH HOH . 
E 3 HOH B 56 756 114 HOH HOH . 
E 3 HOH B 57 757 115 HOH HOH . 
E 3 HOH B 58 758 116 HOH HOH . 
E 3 HOH B 59 759 119 HOH HOH . 
E 3 HOH B 60 760 120 HOH HOH . 
E 3 HOH B 61 761 126 HOH HOH . 
E 3 HOH B 62 762 131 HOH HOH . 
E 3 HOH B 63 763 132 HOH HOH . 
E 3 HOH B 64 764 134 HOH HOH . 
E 3 HOH B 65 765 136 HOH HOH . 
E 3 HOH B 66 766 141 HOH HOH . 
E 3 HOH B 67 767 145 HOH HOH . 
E 3 HOH B 68 768 146 HOH HOH . 
E 3 HOH B 69 769 148 HOH HOH . 
E 3 HOH B 70 770 155 HOH HOH . 
E 3 HOH B 71 771 160 HOH HOH . 
E 3 HOH B 72 772 162 HOH HOH . 
E 3 HOH B 73 773 166 HOH HOH . 
E 3 HOH B 74 774 167 HOH HOH . 
E 3 HOH B 75 775 169 HOH HOH . 
E 3 HOH B 76 776 171 HOH HOH . 
E 3 HOH B 77 777 176 HOH HOH . 
E 3 HOH B 78 778 177 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               4.742 
_atom_site.Cartn_y               3.951 
_atom_site.Cartn_z               -1.517 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        11.74 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           701 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#