data_4Y5X
#
_model_server_result.job_id            sTga60mtRiRnaDqm_MR0mA 
_model_server_result.datetime_utc      '2024-12-11 07:22:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y5x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    4Y5X 
#
_exptl.entry_id    4Y5X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Y5X 
_cell.length_a            239.54 
_cell.length_b            239.54 
_cell.length_c            132.569 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y5X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O,P,Q,R,S,Y,Z,AA,BA,CA,DA,EA,FA,MA,NA,OA 1 1 
D,E,F,G,H,I,T,U,V,W,X,GA,HA,IA,JA,KA,LA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 22 1_555 A SG CYS 103 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 C SG CYS 26 C CYS 28 1_555 C SG CYS 36 C CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 C SG CYS 65 C CYS 67 1_555 C SG CYS 81 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 D SG CYS 29 D CYS 22 1_555 D SG CYS 103 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 E SG CYS 22 E CYS 22 1_555 E SG CYS 89 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 F SG CYS 26 F CYS 28 1_555 F SG CYS 36 F CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 F SG CYS 65 F CYS 67 1_555 F SG CYS 81 F CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 G SG CYS 29 G CYS 22 1_555 G SG CYS 103 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 H SG CYS 22 H CYS 22 1_555 H SG CYS 89 H CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 I SG CYS 26 I CYS 28 1_555 I SG CYS 36 I CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 I SG CYS 65 I CYS 67 1_555 I SG CYS 81 I CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 J SG CYS 29 J CYS 22 1_555 J SG CYS 103 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 K SG CYS 22 K CYS 22 1_555 K SG CYS 89 K CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 L SG CYS 26 L CYS 28 1_555 L SG CYS 36 L CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf16 L SG CYS 65 L CYS 67 1_555 L SG CYS 81 L CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 254 n n 
C1 C2 PEG sing 255 n n 
C1 H11 PEG sing 256 n n 
C1 H12 PEG sing 257 n n 
O1 HO1 PEG sing 258 n n 
C2 O2 PEG sing 259 n n 
C2 H21 PEG sing 260 n n 
C2 H22 PEG sing 261 n n 
O2 C3 PEG sing 262 n n 
C3 C4 PEG sing 263 n n 
C3 H31 PEG sing 264 n n 
C3 H32 PEG sing 265 n n 
C4 O4 PEG sing 266 n n 
C4 H41 PEG sing 267 n n 
C4 H42 PEG sing 268 n n 
O4 HO4 PEG sing 269 n n 
#
_atom_sites.entry_id                     4Y5X 
_atom_sites.fract_transf_matrix[1][1]    0.004175 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004175 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007543 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 PEG A 1 201 13 PEG PEG . 
N 4 PEG B 1 201 5 PEG PEG . 
O 4 PEG B 1 202 8 PEG PEG . 
P 4 PEG B 1 203 17 PEG PEG . 
Q 4 PEG C 1 301 2 PEG PEG . 
R 4 PEG C 1 302 6 PEG PEG . 
S 4 PEG C 1 303 9 PEG PEG . 
T 4 PEG E 1 201 21 PEG PEG . 
U 4 PEG F 1 301 7 PEG PEG . 
V 4 PEG G 1 201 10 PEG PEG . 
W 4 PEG G 1 202 12 PEG PEG . 
X 4 PEG H 1 201 3 PEG PEG . 
Y 4 PEG J 1 201 16 PEG PEG . 
Z 4 PEG K 1 201 11 PEG PEG . 
AA 5 FLC K 1 202 1 FLC FLC . 
BA 4 PEG L 1 301 4 PEG PEG . 
CA 4 PEG L 1 302 18 PEG PEG . 
DA 4 PEG L 1 303 20 PEG PEG . 
EA 6 HOH A 1 301 42 HOH HOH . 
FA 6 HOH C 1 401 2 HOH HOH . 
FA 6 HOH C 2 402 3 HOH HOH . 
FA 6 HOH C 3 403 44 HOH HOH . 
GA 6 HOH D 1 201 5 HOH HOH . 
GA 6 HOH D 2 202 33 HOH HOH . 
HA 6 HOH E 1 301 4 HOH HOH . 
HA 6 HOH E 2 302 20 HOH HOH . 
HA 6 HOH E 3 303 24 HOH HOH . 
HA 6 HOH E 4 304 25 HOH HOH . 
HA 6 HOH E 5 305 26 HOH HOH . 
IA 6 HOH F 1 401 40 HOH HOH . 
IA 6 HOH F 2 402 47 HOH HOH . 
JA 6 HOH G 1 301 35 HOH HOH . 
JA 6 HOH G 2 302 7 HOH HOH . 
JA 6 HOH G 3 303 41 HOH HOH . 
KA 6 HOH H 1 301 16 HOH HOH . 
LA 6 HOH I 1 301 43 HOH HOH . 
MA 6 HOH J 1 301 9 HOH HOH . 
MA 6 HOH J 2 302 10 HOH HOH . 
MA 6 HOH J 3 303 11 HOH HOH . 
MA 6 HOH J 4 304 45 HOH HOH . 
NA 6 HOH K 1 301 27 HOH HOH . 
OA 6 HOH L 1 401 17 HOH HOH . 
OA 6 HOH L 2 402 21 HOH HOH . 
OA 6 HOH L 3 403 22 HOH HOH . 
OA 6 HOH L 4 404 28 HOH HOH . 
OA 6 HOH L 5 405 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . M 4 -79.958 22.578 -4.214 1 94.52 ? C1 PEG 201 A 1 
HETATM 2 O O1 PEG . . . M 4 -80.136 22.379 -5.542 1 94.15 ? O1 PEG 201 A 1 
HETATM 3 C C2 PEG . . . M 4 -78.613 23.188 -3.965 1 92.29 ? C2 PEG 201 A 1 
HETATM 4 O O2 PEG . . . M 4 -77.636 22.17 -3.833 1 107.48 ? O2 PEG 201 A 1 
HETATM 5 C C3 PEG . . . M 4 -77.259 21.543 -5.081 1 98.45 ? C3 PEG 201 A 1 
HETATM 6 C C4 PEG . . . M 4 -77.998 20.236 -5.244 1 98.16 ? C4 PEG 201 A 1 
HETATM 7 O O4 PEG . . . M 4 -77.845 19.774 -6.564 1 85.84 ? O4 PEG 201 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#