data_4Y5X # _model_server_result.job_id HdR64rHNbVKJ9MLCOz9wOg _model_server_result.datetime_utc '2024-12-03 19:53:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":202}' # _entry.id 4Y5X # _exptl.entry_id 4Y5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y5X _cell.length_a 239.54 _cell.length_b 239.54 _cell.length_c 132.569 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q,R,S,Y,Z,AA,BA,CA,DA,EA,FA,MA,NA,OA 1 1 D,E,F,G,H,I,T,U,V,W,X,GA,HA,IA,JA,KA,LA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id AA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 22 1_555 A SG CYS 103 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 26 C CYS 28 1_555 C SG CYS 36 C CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 65 C CYS 67 1_555 C SG CYS 81 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 29 D CYS 22 1_555 D SG CYS 103 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 E SG CYS 22 E CYS 22 1_555 E SG CYS 89 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 F SG CYS 26 F CYS 28 1_555 F SG CYS 36 F CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 F SG CYS 65 F CYS 67 1_555 F SG CYS 81 F CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 G SG CYS 29 G CYS 22 1_555 G SG CYS 103 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 H SG CYS 22 H CYS 22 1_555 H SG CYS 89 H CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 I SG CYS 26 I CYS 28 1_555 I SG CYS 36 I CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 I SG CYS 65 I CYS 67 1_555 I SG CYS 81 I CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 J SG CYS 29 J CYS 22 1_555 J SG CYS 103 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 K SG CYS 22 K CYS 22 1_555 K SG CYS 89 K CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 L SG CYS 26 L CYS 28 1_555 L SG CYS 36 L CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 L SG CYS 65 L CYS 67 1_555 L SG CYS 81 L CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 83 n n CAC OA1 FLC doub 84 n n CAC OA2 FLC sing 85 n n CA CB FLC sing 86 n n CA HA1 FLC sing 87 n n CA HA2 FLC sing 88 n n CB CBC FLC sing 89 n n CB CG FLC sing 90 n n CB OHB FLC sing 91 n n CBC OB1 FLC doub 92 n n CBC OB2 FLC sing 93 n n CG CGC FLC sing 94 n n CG HG1 FLC sing 95 n n CG HG2 FLC sing 96 n n CGC OG1 FLC doub 97 n n CGC OG2 FLC sing 98 n n OHB HOB FLC sing 99 n n # _atom_sites.entry_id 4Y5X _atom_sites.fract_transf_matrix[1][1] 0.004175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 PEG A 1 201 13 PEG PEG . N 4 PEG B 1 201 5 PEG PEG . O 4 PEG B 1 202 8 PEG PEG . P 4 PEG B 1 203 17 PEG PEG . Q 4 PEG C 1 301 2 PEG PEG . R 4 PEG C 1 302 6 PEG PEG . S 4 PEG C 1 303 9 PEG PEG . T 4 PEG E 1 201 21 PEG PEG . U 4 PEG F 1 301 7 PEG PEG . V 4 PEG G 1 201 10 PEG PEG . W 4 PEG G 1 202 12 PEG PEG . X 4 PEG H 1 201 3 PEG PEG . Y 4 PEG J 1 201 16 PEG PEG . Z 4 PEG K 1 201 11 PEG PEG . AA 5 FLC K 1 202 1 FLC FLC . BA 4 PEG L 1 301 4 PEG PEG . CA 4 PEG L 1 302 18 PEG PEG . DA 4 PEG L 1 303 20 PEG PEG . EA 6 HOH A 1 301 42 HOH HOH . FA 6 HOH C 1 401 2 HOH HOH . FA 6 HOH C 2 402 3 HOH HOH . FA 6 HOH C 3 403 44 HOH HOH . GA 6 HOH D 1 201 5 HOH HOH . GA 6 HOH D 2 202 33 HOH HOH . HA 6 HOH E 1 301 4 HOH HOH . HA 6 HOH E 2 302 20 HOH HOH . HA 6 HOH E 3 303 24 HOH HOH . HA 6 HOH E 4 304 25 HOH HOH . HA 6 HOH E 5 305 26 HOH HOH . IA 6 HOH F 1 401 40 HOH HOH . IA 6 HOH F 2 402 47 HOH HOH . JA 6 HOH G 1 301 35 HOH HOH . JA 6 HOH G 2 302 7 HOH HOH . JA 6 HOH G 3 303 41 HOH HOH . KA 6 HOH H 1 301 16 HOH HOH . LA 6 HOH I 1 301 43 HOH HOH . MA 6 HOH J 1 301 9 HOH HOH . MA 6 HOH J 2 302 10 HOH HOH . MA 6 HOH J 3 303 11 HOH HOH . MA 6 HOH J 4 304 45 HOH HOH . NA 6 HOH K 1 301 27 HOH HOH . OA 6 HOH L 1 401 17 HOH HOH . OA 6 HOH L 2 402 21 HOH HOH . OA 6 HOH L 3 403 22 HOH HOH . OA 6 HOH L 4 404 28 HOH HOH . OA 6 HOH L 5 405 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . AA 5 -37.669 45.263 -79.906 1 96.97 ? CAC FLC 202 K 1 HETATM 2 C CA FLC . . . AA 5 -38.95 44.574 -80.316 1 96.85 ? CA FLC 202 K 1 HETATM 3 C CB FLC . . . AA 5 -38.892 43.097 -79.989 1 111.99 ? CB FLC 202 K 1 HETATM 4 C CBC FLC . . . AA 5 -38.966 42.933 -78.482 1 95.21 ? CBC FLC 202 K 1 HETATM 5 C CG FLC . . . AA 5 -40.078 42.426 -80.657 1 99.16 ? CG FLC 202 K 1 HETATM 6 C CGC FLC . . . AA 5 -40.006 40.913 -80.602 1 114.06 ? CGC FLC 202 K 1 HETATM 7 O OA1 FLC . . . AA 5 -36.867 45.659 -80.794 1 105.19 ? OA1 FLC 202 K 1 HETATM 8 O OA2 FLC . . . AA 5 -37.412 45.444 -78.686 1 73.33 ? OA2 FLC 202 K 1 HETATM 9 O OB1 FLC . . . AA 5 -39.977 43.345 -77.861 1 91.68 ? OB1 FLC 202 K 1 HETATM 10 O OB2 FLC . . . AA 5 -38.025 42.392 -77.844 1 76.14 ? OB2 FLC 202 K 1 HETATM 11 O OG1 FLC . . . AA 5 -40.335 40.244 -81.617 1 109.36 ? OG1 FLC 202 K 1 HETATM 12 O OG2 FLC . . . AA 5 -39.634 40.314 -79.557 1 108.05 ? OG2 FLC 202 K 1 HETATM 13 O OHB FLC . . . AA 5 -37.69 42.558 -80.486 1 122.24 ? OHB FLC 202 K 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 13 #