data_4Y6N # _model_server_result.job_id rsiJo_ir1w5M2xpXCeiuFg _model_server_result.datetime_utc '2025-01-09 22:16:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4Y6N # _exptl.entry_id 4Y6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y6N _cell.length_a 98.73 _cell.length_b 98.73 _cell.length_c 127.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 140 A ASP 136 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A ND1 HIS 262 A HIS 258 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 B MN MN . A MN 401 1_555 D O1A UPG . A UPG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 B MN MN . A MN 401 1_555 D O2B UPG . A UPG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 B MN MN . A MN 401 1_555 G O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc6 B MN MN . A MN 401 1_555 G O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 3PG _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 3PG doub 1 n n C1 O2 3PG sing 2 n n C1 C2 3PG sing 3 n n O2 HO2 3PG sing 4 n n C2 O3 3PG sing 5 n n C2 C3 3PG sing 6 n n C2 H2 3PG sing 7 n n O3 HO3 3PG sing 8 n n C3 O1P 3PG sing 9 n n C3 H31 3PG sing 10 n n C3 H32 3PG sing 11 n n O1P P 3PG sing 12 n n P O2P 3PG doub 13 n n P O3P 3PG sing 14 n n P O4P 3PG sing 15 n n O3P HOP3 3PG sing 16 n n O4P HOP4 3PG sing 17 n n # _atom_sites.entry_id 4Y6N _atom_sites.fract_transf_matrix[1][1] 0.010129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 1 MN MN . C 3 3PG A 1 402 1 3PG 3PG . D 4 UPG A 1 403 2 UPG UPG . E 5 EDO A 1 404 1 EDO EDO . F 5 EDO A 1 405 1 EDO EDO . G 6 HOH A 1 501 100 HOH HOH . G 6 HOH A 2 502 2 HOH HOH . G 6 HOH A 3 503 25 HOH HOH . G 6 HOH A 4 504 4 HOH HOH . G 6 HOH A 5 505 13 HOH HOH . G 6 HOH A 6 506 5 HOH HOH . G 6 HOH A 7 507 8 HOH HOH . G 6 HOH A 8 508 12 HOH HOH . G 6 HOH A 9 509 1 HOH HOH . G 6 HOH A 10 510 67 HOH HOH . G 6 HOH A 11 511 41 HOH HOH . G 6 HOH A 12 512 9 HOH HOH . G 6 HOH A 13 513 14 HOH HOH . G 6 HOH A 14 514 90 HOH HOH . G 6 HOH A 15 515 46 HOH HOH . G 6 HOH A 16 516 45 HOH HOH . G 6 HOH A 17 517 21 HOH HOH . G 6 HOH A 18 518 10 HOH HOH . G 6 HOH A 19 519 51 HOH HOH . G 6 HOH A 20 520 20 HOH HOH . G 6 HOH A 21 521 30 HOH HOH . G 6 HOH A 22 522 27 HOH HOH . G 6 HOH A 23 523 53 HOH HOH . G 6 HOH A 24 524 11 HOH HOH . G 6 HOH A 25 525 29 HOH HOH . G 6 HOH A 26 526 17 HOH HOH . G 6 HOH A 27 527 42 HOH HOH . G 6 HOH A 28 528 7 HOH HOH . G 6 HOH A 29 529 101 HOH HOH . G 6 HOH A 30 530 75 HOH HOH . G 6 HOH A 31 531 24 HOH HOH . G 6 HOH A 32 532 63 HOH HOH . G 6 HOH A 33 533 82 HOH HOH . G 6 HOH A 34 534 59 HOH HOH . G 6 HOH A 35 535 78 HOH HOH . G 6 HOH A 36 536 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3PG . . . C 3 8.782 -1.922 -28.131 0.89 88.24 ? C1 3PG 402 A 1 HETATM 2 O O1 3PG . . . C 3 7.949 -1.003 -27.931 0.89 83.51 ? O1 3PG 402 A 1 HETATM 3 O O2 3PG . . . C 3 9.942 -1.839 -27.643 0.89 87.78 ? O2 3PG 402 A 1 HETATM 4 C C2 3PG . . . C 3 8.357 -3.102 -28.977 0.89 94.21 ? C2 3PG 402 A 1 HETATM 5 O O3 3PG . . . C 3 9.114 -4.243 -28.713 0.89 96.43 ? O3 3PG 402 A 1 HETATM 6 C C3 3PG . . . C 3 8.584 -2.79 -30.421 0.89 92.77 ? C3 3PG 402 A 1 HETATM 7 O O1P 3PG . . . C 3 7.381 -2.272 -30.881 0.89 99.61 ? O1P 3PG 402 A 1 HETATM 8 P P 3PG . . . C 3 7.362 -1.986 -32.412 0.89 97.13 ? P 3PG 402 A 1 HETATM 9 O O2P 3PG . . . C 3 7.418 -3.307 -33.141 0.89 100.13 ? O2P 3PG 402 A 1 HETATM 10 O O3P 3PG . . . C 3 6.085 -1.242 -32.718 0.89 98.95 ? O3P 3PG 402 A 1 HETATM 11 O O4P 3PG . . . C 3 8.579 -1.15 -32.726 0.89 92.53 ? O4P 3PG 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #