data_4Y76 # _model_server_result.job_id GT5ccn7AJ70HpcxGnpffOg _model_server_result.datetime_utc '2024-11-22 12:51:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4Y76 # _exptl.entry_id 4Y76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y76 _cell.length_a 56.648 _cell.length_b 72.805 _cell.length_c 80.021 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 127 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 84 B CYS 1 1_555 B SG CYS 95 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 B SG CYS 91 B CYS 8 1_555 B SG CYS 104 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 106 B CYS 23 1_555 B SG CYS 119 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 C CA CA . A CA 301 1_555 E O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc6 C CA CA . A CA 301 1_555 E O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Y76 _atom_sites.fract_transf_matrix[1][1] 0.017653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 4 4O1 A 1 302 1 4O1 UNL . E 5 HOH A 1 401 125 HOH HOH . E 5 HOH A 2 402 31 HOH HOH . E 5 HOH A 3 403 75 HOH HOH . E 5 HOH A 4 404 120 HOH HOH . E 5 HOH A 5 405 143 HOH HOH . E 5 HOH A 6 406 145 HOH HOH . E 5 HOH A 7 407 154 HOH HOH . E 5 HOH A 8 408 110 HOH HOH . E 5 HOH A 9 409 50 HOH HOH . E 5 HOH A 10 410 108 HOH HOH . E 5 HOH A 11 411 5 HOH HOH . E 5 HOH A 12 412 67 HOH HOH . E 5 HOH A 13 413 79 HOH HOH . E 5 HOH A 14 414 84 HOH HOH . E 5 HOH A 15 415 203 HOH HOH . E 5 HOH A 16 416 156 HOH HOH . E 5 HOH A 17 417 13 HOH HOH . E 5 HOH A 18 418 86 HOH HOH . E 5 HOH A 19 419 103 HOH HOH . E 5 HOH A 20 420 149 HOH HOH . E 5 HOH A 21 421 1 HOH HOH . E 5 HOH A 22 422 215 HOH HOH . E 5 HOH A 23 423 24 HOH HOH . E 5 HOH A 24 424 33 HOH HOH . E 5 HOH A 25 425 184 HOH HOH . E 5 HOH A 26 426 3 HOH HOH . E 5 HOH A 27 427 49 HOH HOH . E 5 HOH A 28 428 123 HOH HOH . E 5 HOH A 29 429 182 HOH HOH . E 5 HOH A 30 430 58 HOH HOH . E 5 HOH A 31 431 107 HOH HOH . E 5 HOH A 32 432 138 HOH HOH . E 5 HOH A 33 433 155 HOH HOH . E 5 HOH A 34 434 196 HOH HOH . E 5 HOH A 35 435 81 HOH HOH . E 5 HOH A 36 436 73 HOH HOH . E 5 HOH A 37 437 100 HOH HOH . E 5 HOH A 38 438 80 HOH HOH . E 5 HOH A 39 439 133 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . E 5 HOH A 41 441 62 HOH HOH . E 5 HOH A 42 442 34 HOH HOH . E 5 HOH A 43 443 77 HOH HOH . E 5 HOH A 44 444 160 HOH HOH . E 5 HOH A 45 445 18 HOH HOH . E 5 HOH A 46 446 210 HOH HOH . E 5 HOH A 47 447 148 HOH HOH . E 5 HOH A 48 448 159 HOH HOH . E 5 HOH A 49 449 181 HOH HOH . E 5 HOH A 50 450 200 HOH HOH . E 5 HOH A 51 451 197 HOH HOH . E 5 HOH A 52 452 208 HOH HOH . E 5 HOH A 53 453 92 HOH HOH . E 5 HOH A 54 454 207 HOH HOH . E 5 HOH A 55 455 183 HOH HOH . E 5 HOH A 56 456 113 HOH HOH . E 5 HOH A 57 457 4 HOH HOH . E 5 HOH A 58 458 6 HOH HOH . E 5 HOH A 59 459 7 HOH HOH . E 5 HOH A 60 460 8 HOH HOH . E 5 HOH A 61 461 9 HOH HOH . E 5 HOH A 62 462 12 HOH HOH . E 5 HOH A 63 463 14 HOH HOH . E 5 HOH A 64 464 15 HOH HOH . E 5 HOH A 65 465 17 HOH HOH . E 5 HOH A 66 466 21 HOH HOH . E 5 HOH A 67 467 22 HOH HOH . E 5 HOH A 68 468 25 HOH HOH . E 5 HOH A 69 469 26 HOH HOH . E 5 HOH A 70 470 29 HOH HOH . E 5 HOH A 71 471 30 HOH HOH . E 5 HOH A 72 472 35 HOH HOH . E 5 HOH A 73 473 36 HOH HOH . E 5 HOH A 74 474 37 HOH HOH . E 5 HOH A 75 475 38 HOH HOH . E 5 HOH A 76 476 39 HOH HOH . E 5 HOH A 77 477 42 HOH HOH . E 5 HOH A 78 478 43 HOH HOH . E 5 HOH A 79 479 44 HOH HOH . E 5 HOH A 80 480 45 HOH HOH . E 5 HOH A 81 481 46 HOH HOH . E 5 HOH A 82 482 47 HOH HOH . E 5 HOH A 83 483 48 HOH HOH . E 5 HOH A 84 484 51 HOH HOH . E 5 HOH A 85 485 52 HOH HOH . E 5 HOH A 86 486 54 HOH HOH . E 5 HOH A 87 487 55 HOH HOH . E 5 HOH A 88 488 56 HOH HOH . E 5 HOH A 89 489 57 HOH HOH . E 5 HOH A 90 490 60 HOH HOH . E 5 HOH A 91 491 63 HOH HOH . E 5 HOH A 92 492 64 HOH HOH . E 5 HOH A 93 493 65 HOH HOH . E 5 HOH A 94 494 66 HOH HOH . E 5 HOH A 95 495 69 HOH HOH . E 5 HOH A 96 496 70 HOH HOH . E 5 HOH A 97 497 71 HOH HOH . E 5 HOH A 98 498 76 HOH HOH . E 5 HOH A 99 499 82 HOH HOH . E 5 HOH A 100 500 85 HOH HOH . E 5 HOH A 101 501 87 HOH HOH . E 5 HOH A 102 502 88 HOH HOH . E 5 HOH A 103 503 89 HOH HOH . E 5 HOH A 104 504 93 HOH HOH . E 5 HOH A 105 505 95 HOH HOH . E 5 HOH A 106 506 96 HOH HOH . E 5 HOH A 107 507 97 HOH HOH . E 5 HOH A 108 508 101 HOH HOH . E 5 HOH A 109 509 105 HOH HOH . E 5 HOH A 110 510 106 HOH HOH . E 5 HOH A 111 511 109 HOH HOH . E 5 HOH A 112 512 112 HOH HOH . E 5 HOH A 113 513 114 HOH HOH . E 5 HOH A 114 514 115 HOH HOH . E 5 HOH A 115 515 116 HOH HOH . E 5 HOH A 116 516 117 HOH HOH . E 5 HOH A 117 517 118 HOH HOH . E 5 HOH A 118 518 121 HOH HOH . E 5 HOH A 119 519 122 HOH HOH . E 5 HOH A 120 520 124 HOH HOH . E 5 HOH A 121 521 126 HOH HOH . E 5 HOH A 122 522 127 HOH HOH . E 5 HOH A 123 523 128 HOH HOH . E 5 HOH A 124 524 129 HOH HOH . E 5 HOH A 125 525 130 HOH HOH . E 5 HOH A 126 526 131 HOH HOH . E 5 HOH A 127 527 132 HOH HOH . E 5 HOH A 128 528 134 HOH HOH . E 5 HOH A 129 529 135 HOH HOH . E 5 HOH A 130 530 136 HOH HOH . E 5 HOH A 131 531 139 HOH HOH . E 5 HOH A 132 532 140 HOH HOH . E 5 HOH A 133 533 142 HOH HOH . E 5 HOH A 134 534 144 HOH HOH . E 5 HOH A 135 535 147 HOH HOH . E 5 HOH A 136 536 162 HOH HOH . E 5 HOH A 137 537 166 HOH HOH . E 5 HOH A 138 538 173 HOH HOH . E 5 HOH A 139 539 174 HOH HOH . E 5 HOH A 140 540 175 HOH HOH . E 5 HOH A 141 541 176 HOH HOH . E 5 HOH A 142 542 177 HOH HOH . E 5 HOH A 143 543 178 HOH HOH . E 5 HOH A 144 544 179 HOH HOH . E 5 HOH A 145 545 180 HOH HOH . E 5 HOH A 146 546 186 HOH HOH . E 5 HOH A 147 547 190 HOH HOH . E 5 HOH A 148 548 191 HOH HOH . E 5 HOH A 149 549 192 HOH HOH . E 5 HOH A 150 550 193 HOH HOH . E 5 HOH A 151 551 194 HOH HOH . E 5 HOH A 152 552 195 HOH HOH . E 5 HOH A 153 553 204 HOH HOH . E 5 HOH A 154 554 205 HOH HOH . E 5 HOH A 155 555 206 HOH HOH . E 5 HOH A 156 556 211 HOH HOH . E 5 HOH A 157 557 212 HOH HOH . E 5 HOH A 158 558 213 HOH HOH . E 5 HOH A 159 559 214 HOH HOH . F 5 HOH B 1 101 164 HOH HOH . F 5 HOH B 2 102 167 HOH HOH . F 5 HOH B 3 103 41 HOH HOH . F 5 HOH B 4 104 102 HOH HOH . F 5 HOH B 5 105 32 HOH HOH . F 5 HOH B 6 106 198 HOH HOH . F 5 HOH B 7 107 170 HOH HOH . F 5 HOH B 8 108 10 HOH HOH . F 5 HOH B 9 109 2 HOH HOH . F 5 HOH B 10 110 153 HOH HOH . F 5 HOH B 11 111 68 HOH HOH . F 5 HOH B 12 112 72 HOH HOH . F 5 HOH B 13 113 137 HOH HOH . F 5 HOH B 14 114 27 HOH HOH . F 5 HOH B 15 115 157 HOH HOH . F 5 HOH B 16 116 16 HOH HOH . F 5 HOH B 17 117 165 HOH HOH . F 5 HOH B 18 118 83 HOH HOH . F 5 HOH B 19 119 187 HOH HOH . F 5 HOH B 20 120 199 HOH HOH . F 5 HOH B 21 121 169 HOH HOH . F 5 HOH B 22 122 11 HOH HOH . F 5 HOH B 23 123 19 HOH HOH . F 5 HOH B 24 124 20 HOH HOH . F 5 HOH B 25 125 23 HOH HOH . F 5 HOH B 26 126 28 HOH HOH . F 5 HOH B 27 127 53 HOH HOH . F 5 HOH B 28 128 59 HOH HOH . F 5 HOH B 29 129 61 HOH HOH . F 5 HOH B 30 130 74 HOH HOH . F 5 HOH B 31 131 78 HOH HOH . F 5 HOH B 32 132 90 HOH HOH . F 5 HOH B 33 133 91 HOH HOH . F 5 HOH B 34 134 94 HOH HOH . F 5 HOH B 35 135 98 HOH HOH . F 5 HOH B 36 136 99 HOH HOH . F 5 HOH B 37 137 104 HOH HOH . F 5 HOH B 38 138 111 HOH HOH . F 5 HOH B 39 139 119 HOH HOH . F 5 HOH B 40 140 141 HOH HOH . F 5 HOH B 41 141 146 HOH HOH . F 5 HOH B 42 142 150 HOH HOH . F 5 HOH B 43 143 151 HOH HOH . F 5 HOH B 44 144 152 HOH HOH . F 5 HOH B 45 145 158 HOH HOH . F 5 HOH B 46 146 161 HOH HOH . F 5 HOH B 47 147 163 HOH HOH . F 5 HOH B 48 148 168 HOH HOH . F 5 HOH B 49 149 188 HOH HOH . F 5 HOH B 50 150 189 HOH HOH . F 5 HOH B 51 151 201 HOH HOH . F 5 HOH B 52 152 209 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.303 _atom_site.Cartn_y 31.775 _atom_site.Cartn_z 29.432 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #