data_4Y79 # _model_server_result.job_id Ohk92pNckI3-mxWYhc0EeQ _model_server_result.datetime_utc '2024-12-26 13:13:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4Y79 # _exptl.entry_id 4Y79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y79 _cell.length_a 56.914 _cell.length_b 72.756 _cell.length_c 79.901 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 127 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 B SG CYS 84 B CYS 1 1_555 B SG CYS 95 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf7 B SG CYS 91 B CYS 8 1_555 B SG CYS 104 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 B SG CYS 106 B CYS 23 1_555 B SG CYS 119 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc4 A OE2 GLU 63 A GLU 77 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 A O TYR 173 A TYR 185 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc7 A O ASP 174 A ASP 185 1_555 D MG MG . A MG 302 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc8 A O ARG 211 A ARG 222 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc9 A O LYS 214 A LYS 224 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc10 C CA CA . A CA 301 1_555 F O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 D MG MG . A MG 302 1_555 F O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc12 D MG MG . A MG 302 1_555 F O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Y79 _atom_sites.fract_transf_matrix[1][1] 0.01757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 4 MG A 1 302 2 MG MG . E 5 4O6 A 1 303 1 4O6 UNL . F 6 HOH A 1 401 31 HOH HOH . F 6 HOH A 2 402 213 HOH HOH . F 6 HOH A 3 403 240 HOH HOH . F 6 HOH A 4 404 87 HOH HOH . F 6 HOH A 5 405 134 HOH HOH . F 6 HOH A 6 406 13 HOH HOH . F 6 HOH A 7 407 129 HOH HOH . F 6 HOH A 8 408 101 HOH HOH . F 6 HOH A 9 409 5 HOH HOH . F 6 HOH A 10 410 88 HOH HOH . F 6 HOH A 11 411 215 HOH HOH . F 6 HOH A 12 412 224 HOH HOH . F 6 HOH A 13 413 85 HOH HOH . F 6 HOH A 14 414 115 HOH HOH . F 6 HOH A 15 415 75 HOH HOH . F 6 HOH A 16 416 155 HOH HOH . F 6 HOH A 17 417 1 HOH HOH . F 6 HOH A 18 418 50 HOH HOH . F 6 HOH A 19 419 80 HOH HOH . F 6 HOH A 20 420 66 HOH HOH . F 6 HOH A 21 421 230 HOH HOH . F 6 HOH A 22 422 113 HOH HOH . F 6 HOH A 23 423 221 HOH HOH . F 6 HOH A 24 424 24 HOH HOH . F 6 HOH A 25 425 40 HOH HOH . F 6 HOH A 26 426 33 HOH HOH . F 6 HOH A 27 427 159 HOH HOH . F 6 HOH A 28 428 199 HOH HOH . F 6 HOH A 29 429 67 HOH HOH . F 6 HOH A 30 430 157 HOH HOH . F 6 HOH A 31 431 107 HOH HOH . F 6 HOH A 32 432 160 HOH HOH . F 6 HOH A 33 433 81 HOH HOH . F 6 HOH A 34 434 144 HOH HOH . F 6 HOH A 35 435 49 HOH HOH . F 6 HOH A 36 436 3 HOH HOH . F 6 HOH A 37 437 18 HOH HOH . F 6 HOH A 38 438 111 HOH HOH . F 6 HOH A 39 439 82 HOH HOH . F 6 HOH A 40 440 73 HOH HOH . F 6 HOH A 41 441 132 HOH HOH . F 6 HOH A 42 442 258 HOH HOH . F 6 HOH A 43 443 58 HOH HOH . F 6 HOH A 44 444 152 HOH HOH . F 6 HOH A 45 445 200 HOH HOH . F 6 HOH A 46 446 116 HOH HOH . F 6 HOH A 47 447 174 HOH HOH . F 6 HOH A 48 448 104 HOH HOH . F 6 HOH A 49 449 77 HOH HOH . F 6 HOH A 50 450 34 HOH HOH . F 6 HOH A 51 451 180 HOH HOH . F 6 HOH A 52 452 148 HOH HOH . F 6 HOH A 53 453 173 HOH HOH . F 6 HOH A 54 454 253 HOH HOH . F 6 HOH A 55 455 195 HOH HOH . F 6 HOH A 56 456 190 HOH HOH . F 6 HOH A 57 457 128 HOH HOH . F 6 HOH A 58 458 239 HOH HOH . F 6 HOH A 59 459 95 HOH HOH . F 6 HOH A 60 460 78 HOH HOH . F 6 HOH A 61 461 205 HOH HOH . F 6 HOH A 62 462 121 HOH HOH . F 6 HOH A 63 463 4 HOH HOH . F 6 HOH A 64 464 6 HOH HOH . F 6 HOH A 65 465 7 HOH HOH . F 6 HOH A 66 466 8 HOH HOH . F 6 HOH A 67 467 9 HOH HOH . F 6 HOH A 68 468 12 HOH HOH . F 6 HOH A 69 469 14 HOH HOH . F 6 HOH A 70 470 15 HOH HOH . F 6 HOH A 71 471 21 HOH HOH . F 6 HOH A 72 472 22 HOH HOH . F 6 HOH A 73 473 25 HOH HOH . F 6 HOH A 74 474 26 HOH HOH . F 6 HOH A 75 475 29 HOH HOH . F 6 HOH A 76 476 30 HOH HOH . F 6 HOH A 77 477 35 HOH HOH . F 6 HOH A 78 478 36 HOH HOH . F 6 HOH A 79 479 37 HOH HOH . F 6 HOH A 80 480 38 HOH HOH . F 6 HOH A 81 481 39 HOH HOH . F 6 HOH A 82 482 42 HOH HOH . F 6 HOH A 83 483 43 HOH HOH . F 6 HOH A 84 484 44 HOH HOH . F 6 HOH A 85 485 45 HOH HOH . F 6 HOH A 86 486 46 HOH HOH . F 6 HOH A 87 487 47 HOH HOH . F 6 HOH A 88 488 48 HOH HOH . F 6 HOH A 89 489 51 HOH HOH . F 6 HOH A 90 490 52 HOH HOH . F 6 HOH A 91 491 54 HOH HOH . F 6 HOH A 92 492 55 HOH HOH . F 6 HOH A 93 493 56 HOH HOH . F 6 HOH A 94 494 57 HOH HOH . F 6 HOH A 95 495 61 HOH HOH . F 6 HOH A 96 496 62 HOH HOH . F 6 HOH A 97 497 63 HOH HOH . F 6 HOH A 98 498 64 HOH HOH . F 6 HOH A 99 499 65 HOH HOH . F 6 HOH A 100 500 68 HOH HOH . F 6 HOH A 101 501 69 HOH HOH . F 6 HOH A 102 502 70 HOH HOH . F 6 HOH A 103 503 71 HOH HOH . F 6 HOH A 104 504 76 HOH HOH . F 6 HOH A 105 505 83 HOH HOH . F 6 HOH A 106 506 86 HOH HOH . F 6 HOH A 107 507 89 HOH HOH . F 6 HOH A 108 508 90 HOH HOH . F 6 HOH A 109 509 91 HOH HOH . F 6 HOH A 110 510 92 HOH HOH . F 6 HOH A 111 511 96 HOH HOH . F 6 HOH A 112 512 98 HOH HOH . F 6 HOH A 113 513 99 HOH HOH . F 6 HOH A 114 514 100 HOH HOH . F 6 HOH A 115 515 105 HOH HOH . F 6 HOH A 116 516 109 HOH HOH . F 6 HOH A 117 517 110 HOH HOH . F 6 HOH A 118 518 114 HOH HOH . F 6 HOH A 119 519 119 HOH HOH . F 6 HOH A 120 520 120 HOH HOH . F 6 HOH A 121 521 122 HOH HOH . F 6 HOH A 122 522 123 HOH HOH . F 6 HOH A 123 523 124 HOH HOH . F 6 HOH A 124 524 125 HOH HOH . F 6 HOH A 125 525 127 HOH HOH . F 6 HOH A 126 526 130 HOH HOH . F 6 HOH A 127 527 131 HOH HOH . F 6 HOH A 128 528 133 HOH HOH . F 6 HOH A 129 529 135 HOH HOH . F 6 HOH A 130 530 136 HOH HOH . F 6 HOH A 131 531 137 HOH HOH . F 6 HOH A 132 532 138 HOH HOH . F 6 HOH A 133 533 139 HOH HOH . F 6 HOH A 134 534 140 HOH HOH . F 6 HOH A 135 535 141 HOH HOH . F 6 HOH A 136 536 142 HOH HOH . F 6 HOH A 137 537 143 HOH HOH . F 6 HOH A 138 538 145 HOH HOH . F 6 HOH A 139 539 150 HOH HOH . F 6 HOH A 140 540 151 HOH HOH . F 6 HOH A 141 541 154 HOH HOH . F 6 HOH A 142 542 156 HOH HOH . F 6 HOH A 143 543 169 HOH HOH . F 6 HOH A 144 544 172 HOH HOH . F 6 HOH A 145 545 176 HOH HOH . F 6 HOH A 146 546 178 HOH HOH . F 6 HOH A 147 547 179 HOH HOH . F 6 HOH A 148 548 181 HOH HOH . F 6 HOH A 149 549 182 HOH HOH . F 6 HOH A 150 550 183 HOH HOH . F 6 HOH A 151 551 186 HOH HOH . F 6 HOH A 152 552 187 HOH HOH . F 6 HOH A 153 553 188 HOH HOH . F 6 HOH A 154 554 189 HOH HOH . F 6 HOH A 155 555 192 HOH HOH . F 6 HOH A 156 556 193 HOH HOH . F 6 HOH A 157 557 194 HOH HOH . F 6 HOH A 158 558 196 HOH HOH . F 6 HOH A 159 559 197 HOH HOH . F 6 HOH A 160 560 198 HOH HOH . F 6 HOH A 161 561 216 HOH HOH . F 6 HOH A 162 562 217 HOH HOH . F 6 HOH A 163 563 218 HOH HOH . F 6 HOH A 164 564 220 HOH HOH . F 6 HOH A 165 565 222 HOH HOH . F 6 HOH A 166 566 225 HOH HOH . F 6 HOH A 167 567 226 HOH HOH . F 6 HOH A 168 568 231 HOH HOH . F 6 HOH A 169 569 232 HOH HOH . F 6 HOH A 170 570 233 HOH HOH . F 6 HOH A 171 571 234 HOH HOH . F 6 HOH A 172 572 235 HOH HOH . F 6 HOH A 173 573 243 HOH HOH . F 6 HOH A 174 574 247 HOH HOH . F 6 HOH A 175 575 252 HOH HOH . F 6 HOH A 176 576 255 HOH HOH . F 6 HOH A 177 577 256 HOH HOH . F 6 HOH A 178 578 257 HOH HOH . F 6 HOH A 179 579 259 HOH HOH . F 6 HOH A 180 580 262 HOH HOH . G 6 HOH B 1 101 204 HOH HOH . G 6 HOH B 2 102 106 HOH HOH . G 6 HOH B 3 103 41 HOH HOH . G 6 HOH B 4 104 32 HOH HOH . G 6 HOH B 5 105 2 HOH HOH . G 6 HOH B 6 106 10 HOH HOH . G 6 HOH B 7 107 167 HOH HOH . G 6 HOH B 8 108 72 HOH HOH . G 6 HOH B 9 109 27 HOH HOH . G 6 HOH B 10 110 184 HOH HOH . G 6 HOH B 11 111 162 HOH HOH . G 6 HOH B 12 112 117 HOH HOH . G 6 HOH B 13 113 16 HOH HOH . G 6 HOH B 14 114 202 HOH HOH . G 6 HOH B 15 115 84 HOH HOH . G 6 HOH B 16 116 254 HOH HOH . G 6 HOH B 17 117 11 HOH HOH . G 6 HOH B 18 118 17 HOH HOH . G 6 HOH B 19 119 19 HOH HOH . G 6 HOH B 20 120 20 HOH HOH . G 6 HOH B 21 121 23 HOH HOH . G 6 HOH B 22 122 28 HOH HOH . G 6 HOH B 23 123 53 HOH HOH . G 6 HOH B 24 124 59 HOH HOH . G 6 HOH B 25 125 60 HOH HOH . G 6 HOH B 26 126 74 HOH HOH . G 6 HOH B 27 127 79 HOH HOH . G 6 HOH B 28 128 93 HOH HOH . G 6 HOH B 29 129 94 HOH HOH . G 6 HOH B 30 130 97 HOH HOH . G 6 HOH B 31 131 102 HOH HOH . G 6 HOH B 32 132 103 HOH HOH . G 6 HOH B 33 133 108 HOH HOH . G 6 HOH B 34 134 112 HOH HOH . G 6 HOH B 35 135 118 HOH HOH . G 6 HOH B 36 136 126 HOH HOH . G 6 HOH B 37 137 147 HOH HOH . G 6 HOH B 38 138 149 HOH HOH . G 6 HOH B 39 139 153 HOH HOH . G 6 HOH B 40 140 158 HOH HOH . G 6 HOH B 41 141 163 HOH HOH . G 6 HOH B 42 142 164 HOH HOH . G 6 HOH B 43 143 165 HOH HOH . G 6 HOH B 44 144 168 HOH HOH . G 6 HOH B 45 145 171 HOH HOH . G 6 HOH B 46 146 175 HOH HOH . G 6 HOH B 47 147 177 HOH HOH . G 6 HOH B 48 148 185 HOH HOH . G 6 HOH B 49 149 191 HOH HOH . G 6 HOH B 50 150 201 HOH HOH . G 6 HOH B 51 151 206 HOH HOH . G 6 HOH B 52 152 207 HOH HOH . G 6 HOH B 53 153 208 HOH HOH . G 6 HOH B 54 154 209 HOH HOH . G 6 HOH B 55 155 211 HOH HOH . G 6 HOH B 56 156 260 HOH HOH . G 6 HOH B 57 157 261 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.451 _atom_site.Cartn_y 31.739 _atom_site.Cartn_z 29.131 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #