data_4Y7I # _model_server_result.job_id RUoZIy8YLD6MMgfEqby_vw _model_server_result.datetime_utc '2024-11-21 13:35:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4Y7I # _exptl.entry_id 4Y7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y7I _cell.length_a 69.573 _cell.length_b 77.188 _cell.length_c 197.793 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 4Y7I _atom_sites.fract_transf_matrix[1][1] 0.014373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 601 3 PO4 PO4 . D 2 PO4 A 1 602 4 PO4 PO4 . E 2 PO4 B 1 601 1 PO4 PO4 . F 2 PO4 B 1 602 2 PO4 PO4 . G 3 HOH A 1 701 114 HOH HOH . G 3 HOH A 2 702 71 HOH HOH . G 3 HOH A 3 703 1 HOH HOH . G 3 HOH A 4 704 2 HOH HOH . G 3 HOH A 5 705 3 HOH HOH . G 3 HOH A 6 706 4 HOH HOH . G 3 HOH A 7 707 5 HOH HOH . G 3 HOH A 8 708 6 HOH HOH . G 3 HOH A 9 709 10 HOH HOH . G 3 HOH A 10 710 12 HOH HOH . G 3 HOH A 11 711 14 HOH HOH . G 3 HOH A 12 712 15 HOH HOH . G 3 HOH A 13 713 19 HOH HOH . G 3 HOH A 14 714 22 HOH HOH . G 3 HOH A 15 715 24 HOH HOH . G 3 HOH A 16 716 29 HOH HOH . G 3 HOH A 17 717 30 HOH HOH . G 3 HOH A 18 718 31 HOH HOH . G 3 HOH A 19 719 33 HOH HOH . G 3 HOH A 20 720 34 HOH HOH . G 3 HOH A 21 721 37 HOH HOH . G 3 HOH A 22 722 38 HOH HOH . G 3 HOH A 23 723 39 HOH HOH . G 3 HOH A 24 724 40 HOH HOH . G 3 HOH A 25 725 41 HOH HOH . G 3 HOH A 26 726 46 HOH HOH . G 3 HOH A 27 727 47 HOH HOH . G 3 HOH A 28 728 49 HOH HOH . G 3 HOH A 29 729 52 HOH HOH . G 3 HOH A 30 730 53 HOH HOH . G 3 HOH A 31 731 54 HOH HOH . G 3 HOH A 32 732 57 HOH HOH . G 3 HOH A 33 733 58 HOH HOH . G 3 HOH A 34 734 60 HOH HOH . G 3 HOH A 35 735 61 HOH HOH . G 3 HOH A 36 736 63 HOH HOH . G 3 HOH A 37 737 68 HOH HOH . G 3 HOH A 38 738 69 HOH HOH . G 3 HOH A 39 739 70 HOH HOH . G 3 HOH A 40 740 73 HOH HOH . G 3 HOH A 41 741 74 HOH HOH . G 3 HOH A 42 742 75 HOH HOH . G 3 HOH A 43 743 76 HOH HOH . G 3 HOH A 44 744 77 HOH HOH . G 3 HOH A 45 745 82 HOH HOH . G 3 HOH A 46 746 86 HOH HOH . G 3 HOH A 47 747 88 HOH HOH . G 3 HOH A 48 748 90 HOH HOH . G 3 HOH A 49 749 91 HOH HOH . G 3 HOH A 50 750 92 HOH HOH . G 3 HOH A 51 751 100 HOH HOH . G 3 HOH A 52 752 101 HOH HOH . G 3 HOH A 53 753 106 HOH HOH . G 3 HOH A 54 754 108 HOH HOH . G 3 HOH A 55 755 110 HOH HOH . G 3 HOH A 56 756 113 HOH HOH . G 3 HOH A 57 757 115 HOH HOH . G 3 HOH A 58 758 116 HOH HOH . G 3 HOH A 59 759 118 HOH HOH . G 3 HOH A 60 760 121 HOH HOH . G 3 HOH A 61 761 122 HOH HOH . G 3 HOH A 62 762 124 HOH HOH . G 3 HOH A 63 763 125 HOH HOH . G 3 HOH A 64 764 126 HOH HOH . G 3 HOH A 65 765 128 HOH HOH . G 3 HOH A 66 766 129 HOH HOH . G 3 HOH A 67 767 130 HOH HOH . G 3 HOH A 68 768 133 HOH HOH . G 3 HOH A 69 769 138 HOH HOH . G 3 HOH A 70 770 140 HOH HOH . G 3 HOH A 71 771 143 HOH HOH . G 3 HOH A 72 772 145 HOH HOH . G 3 HOH A 73 773 148 HOH HOH . G 3 HOH A 74 774 149 HOH HOH . G 3 HOH A 75 775 153 HOH HOH . G 3 HOH A 76 776 156 HOH HOH . G 3 HOH A 77 777 158 HOH HOH . G 3 HOH A 78 778 160 HOH HOH . H 3 HOH B 1 701 99 HOH HOH . H 3 HOH B 2 702 43 HOH HOH . H 3 HOH B 3 703 107 HOH HOH . H 3 HOH B 4 704 35 HOH HOH . H 3 HOH B 5 705 157 HOH HOH . H 3 HOH B 6 706 8 HOH HOH . H 3 HOH B 7 707 103 HOH HOH . H 3 HOH B 8 708 98 HOH HOH . H 3 HOH B 9 709 111 HOH HOH . H 3 HOH B 10 710 123 HOH HOH . H 3 HOH B 11 711 7 HOH HOH . H 3 HOH B 12 712 9 HOH HOH . H 3 HOH B 13 713 11 HOH HOH . H 3 HOH B 14 714 13 HOH HOH . H 3 HOH B 15 715 16 HOH HOH . H 3 HOH B 16 716 17 HOH HOH . H 3 HOH B 17 717 18 HOH HOH . H 3 HOH B 18 718 20 HOH HOH . H 3 HOH B 19 719 21 HOH HOH . H 3 HOH B 20 720 23 HOH HOH . H 3 HOH B 21 721 25 HOH HOH . H 3 HOH B 22 722 26 HOH HOH . H 3 HOH B 23 723 27 HOH HOH . H 3 HOH B 24 724 28 HOH HOH . H 3 HOH B 25 725 32 HOH HOH . H 3 HOH B 26 726 36 HOH HOH . H 3 HOH B 27 727 42 HOH HOH . H 3 HOH B 28 728 44 HOH HOH . H 3 HOH B 29 729 45 HOH HOH . H 3 HOH B 30 730 48 HOH HOH . H 3 HOH B 31 731 50 HOH HOH . H 3 HOH B 32 732 51 HOH HOH . H 3 HOH B 33 733 55 HOH HOH . H 3 HOH B 34 734 56 HOH HOH . H 3 HOH B 35 735 59 HOH HOH . H 3 HOH B 36 736 62 HOH HOH . H 3 HOH B 37 737 64 HOH HOH . H 3 HOH B 38 738 65 HOH HOH . H 3 HOH B 39 739 66 HOH HOH . H 3 HOH B 40 740 67 HOH HOH . H 3 HOH B 41 741 72 HOH HOH . H 3 HOH B 42 742 78 HOH HOH . H 3 HOH B 43 743 79 HOH HOH . H 3 HOH B 44 744 80 HOH HOH . H 3 HOH B 45 745 81 HOH HOH . H 3 HOH B 46 746 83 HOH HOH . H 3 HOH B 47 747 84 HOH HOH . H 3 HOH B 48 748 85 HOH HOH . H 3 HOH B 49 749 87 HOH HOH . H 3 HOH B 50 750 89 HOH HOH . H 3 HOH B 51 751 93 HOH HOH . H 3 HOH B 52 752 94 HOH HOH . H 3 HOH B 53 753 95 HOH HOH . H 3 HOH B 54 754 96 HOH HOH . H 3 HOH B 55 755 97 HOH HOH . H 3 HOH B 56 756 102 HOH HOH . H 3 HOH B 57 757 104 HOH HOH . H 3 HOH B 58 758 105 HOH HOH . H 3 HOH B 59 759 109 HOH HOH . H 3 HOH B 60 760 112 HOH HOH . H 3 HOH B 61 761 117 HOH HOH . H 3 HOH B 62 762 119 HOH HOH . H 3 HOH B 63 763 120 HOH HOH . H 3 HOH B 64 764 127 HOH HOH . H 3 HOH B 65 765 131 HOH HOH . H 3 HOH B 66 766 132 HOH HOH . H 3 HOH B 67 767 134 HOH HOH . H 3 HOH B 68 768 135 HOH HOH . H 3 HOH B 69 769 136 HOH HOH . H 3 HOH B 70 770 137 HOH HOH . H 3 HOH B 71 771 139 HOH HOH . H 3 HOH B 72 772 141 HOH HOH . H 3 HOH B 73 773 142 HOH HOH . H 3 HOH B 74 774 144 HOH HOH . H 3 HOH B 75 775 146 HOH HOH . H 3 HOH B 76 776 147 HOH HOH . H 3 HOH B 77 777 150 HOH HOH . H 3 HOH B 78 778 151 HOH HOH . H 3 HOH B 79 779 152 HOH HOH . H 3 HOH B 80 780 154 HOH HOH . H 3 HOH B 81 781 155 HOH HOH . H 3 HOH B 82 782 159 HOH HOH . H 3 HOH B 83 783 161 HOH HOH . H 3 HOH B 84 784 162 HOH HOH . H 3 HOH B 85 785 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 2 -30.808 -13.931 -1.502 1 40.64 ? P PO4 601 B 1 HETATM 2 O O1 PO4 . . . E 2 -29.803 -14.341 -2.55 1 34.11 ? O1 PO4 601 B 1 HETATM 3 O O2 PO4 . . . E 2 -31.476 -12.627 -1.861 1 31.95 ? O2 PO4 601 B 1 HETATM 4 O O3 PO4 . . . E 2 -31.808 -15.051 -1.377 1 38.02 ? O3 PO4 601 B 1 HETATM 5 O O4 PO4 . . . E 2 -30.095 -13.789 -0.165 1 43.57 ? O4 PO4 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #