data_4Y7S # _model_server_result.job_id tuv8L0NlsjKT0soZKoAiKw _model_server_result.datetime_utc '2024-11-05 04:39:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 4Y7S # _exptl.entry_id 4Y7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y7S _cell.length_a 61.341 _cell.length_b 61.208 _cell.length_c 97.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 62 1_555 A SG CYS 69 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 A SG CYS 33 A CYS 66 1_555 A SG CYS 64 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf3 A SG CYS 43 A CYS 76 1_555 A SG CYS 50 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 52 A CYS 85 1_555 A SG CYS 85 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 29 B CYS 62 1_555 B SG CYS 69 B CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? disulf ? disulf6 B SG CYS 33 B CYS 66 1_555 B SG CYS 64 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 B SG CYS 43 B CYS 76 1_555 B SG CYS 50 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 B SG CYS 52 B CYS 85 1_555 B SG CYS 85 B CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 C SG CYS 29 C CYS 62 1_555 C SG CYS 69 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf10 C SG CYS 33 C CYS 66 1_555 C SG CYS 64 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf11 C SG CYS 43 C CYS 76 1_555 C SG CYS 50 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 C SG CYS 52 C CYS 85 1_555 C SG CYS 85 C CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc1 A OD2 ASP 47 A ASP 80 1_555 D FE HEB . A HEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 B OD2 ASP 47 B ASP 80 1_555 F FE HEB . B HEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 C OD2 ASP 47 C ASP 80 1_555 H FE HEB . C HEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 4Y7S _atom_sites.fract_transf_matrix[1][1] 0.016302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEB A 1 201 185 HEB HEM . E 3 CL A 1 202 1 CL CL . F 2 HEB B 1 201 185 HEB HEM . G 4 EDO B 1 202 1 EDO EDO . H 2 HEB C 1 201 185 HEB HEM . I 5 HOH A 1 301 80 HOH HOH . I 5 HOH A 2 302 42 HOH HOH . I 5 HOH A 3 303 12 HOH HOH . I 5 HOH A 4 304 62 HOH HOH . I 5 HOH A 5 305 123 HOH HOH . I 5 HOH A 6 306 65 HOH HOH . I 5 HOH A 7 307 24 HOH HOH . I 5 HOH A 8 308 211 HOH HOH . I 5 HOH A 9 309 47 HOH HOH . I 5 HOH A 10 310 125 HOH HOH . I 5 HOH A 11 311 154 HOH HOH . I 5 HOH A 12 312 88 HOH HOH . I 5 HOH A 13 313 177 HOH HOH . I 5 HOH A 14 314 89 HOH HOH . I 5 HOH A 15 315 196 HOH HOH . I 5 HOH A 16 316 61 HOH HOH . I 5 HOH A 17 317 68 HOH HOH . I 5 HOH A 18 318 136 HOH HOH . I 5 HOH A 19 319 165 HOH HOH . I 5 HOH A 20 320 87 HOH HOH . I 5 HOH A 21 321 201 HOH HOH . I 5 HOH A 22 322 96 HOH HOH . I 5 HOH A 23 323 41 HOH HOH . I 5 HOH A 24 324 207 HOH HOH . I 5 HOH A 25 325 213 HOH HOH . I 5 HOH A 26 326 156 HOH HOH . I 5 HOH A 27 327 70 HOH HOH . I 5 HOH A 28 328 162 HOH HOH . I 5 HOH A 29 329 5 HOH HOH . I 5 HOH A 30 330 7 HOH HOH . I 5 HOH A 31 331 10 HOH HOH . I 5 HOH A 32 332 14 HOH HOH . I 5 HOH A 33 333 19 HOH HOH . I 5 HOH A 34 334 20 HOH HOH . I 5 HOH A 35 335 22 HOH HOH . I 5 HOH A 36 336 25 HOH HOH . I 5 HOH A 37 337 26 HOH HOH . I 5 HOH A 38 338 27 HOH HOH . I 5 HOH A 39 339 37 HOH HOH . I 5 HOH A 40 340 40 HOH HOH . I 5 HOH A 41 341 43 HOH HOH . I 5 HOH A 42 342 44 HOH HOH . I 5 HOH A 43 343 46 HOH HOH . I 5 HOH A 44 344 50 HOH HOH . I 5 HOH A 45 345 51 HOH HOH . I 5 HOH A 46 346 52 HOH HOH . I 5 HOH A 47 347 58 HOH HOH . I 5 HOH A 48 348 67 HOH HOH . I 5 HOH A 49 349 71 HOH HOH . I 5 HOH A 50 350 74 HOH HOH . I 5 HOH A 51 351 76 HOH HOH . I 5 HOH A 52 352 77 HOH HOH . I 5 HOH A 53 353 78 HOH HOH . I 5 HOH A 54 354 85 HOH HOH . I 5 HOH A 55 355 91 HOH HOH . I 5 HOH A 56 356 92 HOH HOH . I 5 HOH A 57 357 93 HOH HOH . I 5 HOH A 58 358 99 HOH HOH . I 5 HOH A 59 359 101 HOH HOH . I 5 HOH A 60 360 104 HOH HOH . I 5 HOH A 61 361 105 HOH HOH . I 5 HOH A 62 362 106 HOH HOH . I 5 HOH A 63 363 109 HOH HOH . I 5 HOH A 64 364 110 HOH HOH . I 5 HOH A 65 365 111 HOH HOH . I 5 HOH A 66 366 122 HOH HOH . I 5 HOH A 67 367 124 HOH HOH . I 5 HOH A 68 368 133 HOH HOH . I 5 HOH A 69 369 135 HOH HOH . I 5 HOH A 70 370 148 HOH HOH . I 5 HOH A 71 371 152 HOH HOH . I 5 HOH A 72 372 157 HOH HOH . I 5 HOH A 73 373 158 HOH HOH . I 5 HOH A 74 374 159 HOH HOH . I 5 HOH A 75 375 160 HOH HOH . I 5 HOH A 76 376 166 HOH HOH . I 5 HOH A 77 377 168 HOH HOH . I 5 HOH A 78 378 173 HOH HOH . I 5 HOH A 79 379 179 HOH HOH . I 5 HOH A 80 380 180 HOH HOH . I 5 HOH A 81 381 184 HOH HOH . I 5 HOH A 82 382 188 HOH HOH . I 5 HOH A 83 383 192 HOH HOH . I 5 HOH A 84 384 195 HOH HOH . I 5 HOH A 85 385 199 HOH HOH . I 5 HOH A 86 386 202 HOH HOH . I 5 HOH A 87 387 205 HOH HOH . I 5 HOH A 88 388 209 HOH HOH . I 5 HOH A 89 389 216 HOH HOH . I 5 HOH A 90 390 225 HOH HOH . I 5 HOH A 91 391 227 HOH HOH . I 5 HOH A 92 392 232 HOH HOH . I 5 HOH A 93 393 233 HOH HOH . I 5 HOH A 94 394 234 HOH HOH . J 5 HOH B 1 301 131 HOH HOH . J 5 HOH B 2 302 167 HOH HOH . J 5 HOH B 3 303 94 HOH HOH . J 5 HOH B 4 304 33 HOH HOH . J 5 HOH B 5 305 204 HOH HOH . J 5 HOH B 6 306 237 HOH HOH . J 5 HOH B 7 307 86 HOH HOH . J 5 HOH B 8 308 175 HOH HOH . J 5 HOH B 9 309 75 HOH HOH . J 5 HOH B 10 310 84 HOH HOH . J 5 HOH B 11 311 29 HOH HOH . J 5 HOH B 12 312 144 HOH HOH . J 5 HOH B 13 313 217 HOH HOH . J 5 HOH B 14 314 95 HOH HOH . J 5 HOH B 15 315 140 HOH HOH . J 5 HOH B 16 316 3 HOH HOH . J 5 HOH B 17 317 4 HOH HOH . J 5 HOH B 18 318 11 HOH HOH . J 5 HOH B 19 319 16 HOH HOH . J 5 HOH B 20 320 17 HOH HOH . J 5 HOH B 21 321 18 HOH HOH . J 5 HOH B 22 322 28 HOH HOH . J 5 HOH B 23 323 30 HOH HOH . J 5 HOH B 24 324 31 HOH HOH . J 5 HOH B 25 325 34 HOH HOH . J 5 HOH B 26 326 35 HOH HOH . J 5 HOH B 27 327 38 HOH HOH . J 5 HOH B 28 328 39 HOH HOH . J 5 HOH B 29 329 53 HOH HOH . J 5 HOH B 30 330 56 HOH HOH . J 5 HOH B 31 331 60 HOH HOH . J 5 HOH B 32 332 63 HOH HOH . J 5 HOH B 33 333 66 HOH HOH . J 5 HOH B 34 334 69 HOH HOH . J 5 HOH B 35 335 72 HOH HOH . J 5 HOH B 36 336 73 HOH HOH . J 5 HOH B 37 337 79 HOH HOH . J 5 HOH B 38 338 83 HOH HOH . J 5 HOH B 39 339 97 HOH HOH . J 5 HOH B 40 340 98 HOH HOH . J 5 HOH B 41 341 100 HOH HOH . J 5 HOH B 42 342 103 HOH HOH . J 5 HOH B 43 343 107 HOH HOH . J 5 HOH B 44 344 112 HOH HOH . J 5 HOH B 45 345 114 HOH HOH . J 5 HOH B 46 346 115 HOH HOH . J 5 HOH B 47 347 117 HOH HOH . J 5 HOH B 48 348 120 HOH HOH . J 5 HOH B 49 349 121 HOH HOH . J 5 HOH B 50 350 126 HOH HOH . J 5 HOH B 51 351 127 HOH HOH . J 5 HOH B 52 352 130 HOH HOH . J 5 HOH B 53 353 132 HOH HOH . J 5 HOH B 54 354 134 HOH HOH . J 5 HOH B 55 355 137 HOH HOH . J 5 HOH B 56 356 138 HOH HOH . J 5 HOH B 57 357 139 HOH HOH . J 5 HOH B 58 358 150 HOH HOH . J 5 HOH B 59 359 155 HOH HOH . J 5 HOH B 60 360 163 HOH HOH . J 5 HOH B 61 361 181 HOH HOH . J 5 HOH B 62 362 191 HOH HOH . J 5 HOH B 63 363 193 HOH HOH . J 5 HOH B 64 364 194 HOH HOH . J 5 HOH B 65 365 198 HOH HOH . J 5 HOH B 66 366 200 HOH HOH . J 5 HOH B 67 367 206 HOH HOH . J 5 HOH B 68 368 210 HOH HOH . J 5 HOH B 69 369 215 HOH HOH . J 5 HOH B 70 370 219 HOH HOH . J 5 HOH B 71 371 220 HOH HOH . J 5 HOH B 72 372 224 HOH HOH . J 5 HOH B 73 373 226 HOH HOH . J 5 HOH B 74 374 228 HOH HOH . J 5 HOH B 75 375 229 HOH HOH . J 5 HOH B 76 376 230 HOH HOH . J 5 HOH B 77 377 231 HOH HOH . J 5 HOH B 78 378 235 HOH HOH . J 5 HOH B 79 379 236 HOH HOH . J 5 HOH B 80 380 240 HOH HOH . K 5 HOH C 1 301 243 HOH HOH . K 5 HOH C 2 302 242 HOH HOH . K 5 HOH C 3 303 36 HOH HOH . K 5 HOH C 4 304 15 HOH HOH . K 5 HOH C 5 305 90 HOH HOH . K 5 HOH C 6 306 23 HOH HOH . K 5 HOH C 7 307 45 HOH HOH . K 5 HOH C 8 308 241 HOH HOH . K 5 HOH C 9 309 169 HOH HOH . K 5 HOH C 10 310 221 HOH HOH . K 5 HOH C 11 311 145 HOH HOH . K 5 HOH C 12 312 143 HOH HOH . K 5 HOH C 13 313 186 HOH HOH . K 5 HOH C 14 314 142 HOH HOH . K 5 HOH C 15 315 141 HOH HOH . K 5 HOH C 16 316 119 HOH HOH . K 5 HOH C 17 317 1 HOH HOH . K 5 HOH C 18 318 2 HOH HOH . K 5 HOH C 19 319 6 HOH HOH . K 5 HOH C 20 320 8 HOH HOH . K 5 HOH C 21 321 9 HOH HOH . K 5 HOH C 22 322 13 HOH HOH . K 5 HOH C 23 323 21 HOH HOH . K 5 HOH C 24 324 32 HOH HOH . K 5 HOH C 25 325 48 HOH HOH . K 5 HOH C 26 326 49 HOH HOH . K 5 HOH C 27 327 54 HOH HOH . K 5 HOH C 28 328 55 HOH HOH . K 5 HOH C 29 329 57 HOH HOH . K 5 HOH C 30 330 59 HOH HOH . K 5 HOH C 31 331 64 HOH HOH . K 5 HOH C 32 332 81 HOH HOH . K 5 HOH C 33 333 82 HOH HOH . K 5 HOH C 34 334 102 HOH HOH . K 5 HOH C 35 335 108 HOH HOH . K 5 HOH C 36 336 113 HOH HOH . K 5 HOH C 37 337 116 HOH HOH . K 5 HOH C 38 338 118 HOH HOH . K 5 HOH C 39 339 128 HOH HOH . K 5 HOH C 40 340 129 HOH HOH . K 5 HOH C 41 341 147 HOH HOH . K 5 HOH C 42 342 149 HOH HOH . K 5 HOH C 43 343 151 HOH HOH . K 5 HOH C 44 344 153 HOH HOH . K 5 HOH C 45 345 161 HOH HOH . K 5 HOH C 46 346 164 HOH HOH . K 5 HOH C 47 347 170 HOH HOH . K 5 HOH C 48 348 171 HOH HOH . K 5 HOH C 49 349 172 HOH HOH . K 5 HOH C 50 350 174 HOH HOH . K 5 HOH C 51 351 176 HOH HOH . K 5 HOH C 52 352 178 HOH HOH . K 5 HOH C 53 353 182 HOH HOH . K 5 HOH C 54 354 183 HOH HOH . K 5 HOH C 55 355 185 HOH HOH . K 5 HOH C 56 356 187 HOH HOH . K 5 HOH C 57 357 189 HOH HOH . K 5 HOH C 58 358 190 HOH HOH . K 5 HOH C 59 359 197 HOH HOH . K 5 HOH C 60 360 203 HOH HOH . K 5 HOH C 61 361 208 HOH HOH . K 5 HOH C 62 362 212 HOH HOH . K 5 HOH C 63 363 214 HOH HOH . K 5 HOH C 64 364 218 HOH HOH . K 5 HOH C 65 365 222 HOH HOH . K 5 HOH C 66 366 238 HOH HOH . K 5 HOH C 67 367 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 22.841 2.669 11.924 1 60.41 ? C1 EDO 202 B 1 HETATM 2 O O1 EDO . . . G 4 24.073 1.963 12.13 1 59.4 ? O1 EDO 202 B 1 HETATM 3 C C2 EDO . . . G 4 22.526 3.52 13.149 1 57.31 ? C2 EDO 202 B 1 HETATM 4 O O2 EDO . . . G 4 23.213 3.008 14.301 1 54.82 ? O2 EDO 202 B 1 HETATM 5 H H11 EDO . . . G 4 22.925 3.308 11.042 1 72.49 ? H11 EDO 202 B 1 HETATM 6 H H12 EDO . . . G 4 22.032 1.956 11.751 1 72.49 ? H12 EDO 202 B 1 HETATM 7 H HO1 EDO . . . G 4 24.27 1.425 11.351 1 71.27 ? HO1 EDO 202 B 1 HETATM 8 H H21 EDO . . . G 4 22.833 4.552 12.968 1 68.78 ? H21 EDO 202 B 1 HETATM 9 H H22 EDO . . . G 4 21.449 3.515 13.333 1 68.78 ? H22 EDO 202 B 1 HETATM 10 H HO2 EDO . . . G 4 23.006 3.555 15.07 1 65.79 ? HO2 EDO 202 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 10 #