data_4Y7U # _model_server_result.job_id Qwh4NGsEMuAX6zAU9HmDJA _model_server_result.datetime_utc '2024-12-26 15:19:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4Y7U # _exptl.entry_id 4Y7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y7U _cell.length_a 72.75 _cell.length_b 72.75 _cell.length_c 163.13 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 107 A ASP 107 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc2 A OD1 ASP 205 A ASP 205 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 F MG MG . A MG 305 1_555 G O1B 2KH . A 2KH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 219 n n C1 C2 GOL sing 220 n n C1 H11 GOL sing 221 n n C1 H12 GOL sing 222 n n O1 HO1 GOL sing 223 n n C2 O2 GOL sing 224 n n C2 C3 GOL sing 225 n n C2 H2 GOL sing 226 n n O2 HO2 GOL sing 227 n n C3 O3 GOL sing 228 n n C3 H31 GOL sing 229 n n C3 H32 GOL sing 230 n n O3 HO3 GOL sing 231 n n # _atom_sites.entry_id 4Y7U _atom_sites.fract_transf_matrix[1][1] 0.013746 _atom_sites.fract_transf_matrix[1][2] 0.007936 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 2 GOL A 1 302 2 GOL GOL . D 3 SO4 A 1 303 1 SO4 SO4 . E 4 MG A 1 304 1 MG MG . F 4 MG A 1 305 3 MG MG . G 5 2KH A 1 306 1 2KH LIG . H 6 491 A 1 307 1 491 M1P . I 7 HOH A 1 401 20 HOH HOH . I 7 HOH A 2 402 34 HOH HOH . I 7 HOH A 3 403 40 HOH HOH . I 7 HOH A 4 404 15 HOH HOH . I 7 HOH A 5 405 37 HOH HOH . I 7 HOH A 6 406 30 HOH HOH . I 7 HOH A 7 407 47 HOH HOH . I 7 HOH A 8 408 45 HOH HOH . I 7 HOH A 9 409 18 HOH HOH . I 7 HOH A 10 410 13 HOH HOH . I 7 HOH A 11 411 41 HOH HOH . I 7 HOH A 12 412 52 HOH HOH . I 7 HOH A 13 413 11 HOH HOH . I 7 HOH A 14 414 24 HOH HOH . I 7 HOH A 15 415 12 HOH HOH . I 7 HOH A 16 416 36 HOH HOH . I 7 HOH A 17 417 43 HOH HOH . I 7 HOH A 18 418 1 HOH HOH . I 7 HOH A 19 419 2 HOH HOH . I 7 HOH A 20 420 3 HOH HOH . I 7 HOH A 21 421 4 HOH HOH . I 7 HOH A 22 422 5 HOH HOH . I 7 HOH A 23 423 6 HOH HOH . I 7 HOH A 24 424 7 HOH HOH . I 7 HOH A 25 425 8 HOH HOH . I 7 HOH A 26 426 9 HOH HOH . I 7 HOH A 27 427 10 HOH HOH . I 7 HOH A 28 428 14 HOH HOH . I 7 HOH A 29 429 16 HOH HOH . I 7 HOH A 30 430 17 HOH HOH . I 7 HOH A 31 431 19 HOH HOH . I 7 HOH A 32 432 21 HOH HOH . I 7 HOH A 33 433 22 HOH HOH . I 7 HOH A 34 434 23 HOH HOH . I 7 HOH A 35 435 25 HOH HOH . I 7 HOH A 36 436 26 HOH HOH . I 7 HOH A 37 437 27 HOH HOH . I 7 HOH A 38 438 28 HOH HOH . I 7 HOH A 39 439 29 HOH HOH . I 7 HOH A 40 440 31 HOH HOH . I 7 HOH A 41 441 32 HOH HOH . I 7 HOH A 42 442 33 HOH HOH . I 7 HOH A 43 443 35 HOH HOH . I 7 HOH A 44 444 38 HOH HOH . I 7 HOH A 45 445 39 HOH HOH . I 7 HOH A 46 446 42 HOH HOH . I 7 HOH A 47 447 44 HOH HOH . I 7 HOH A 48 448 46 HOH HOH . I 7 HOH A 49 449 48 HOH HOH . I 7 HOH A 50 450 49 HOH HOH . I 7 HOH A 51 451 50 HOH HOH . I 7 HOH A 52 452 51 HOH HOH . I 7 HOH A 53 453 53 HOH HOH . I 7 HOH A 54 454 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -22.273 -21.864 27.73 0.62 66.59 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 2 -23.067 -23.012 27.919 0.62 66.64 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 2 -21.994 -21.657 26.242 0.62 67.55 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 2 -22.123 -20.29 25.92 0.62 68.97 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 2 -20.596 -22.143 25.858 0.62 70.75 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 2 -20.086 -21.369 24.789 0.62 70.64 ? O3 GOL 302 A 1 HETATM 7 H H11 GOL . . . C 2 -22.79 -20.992 28.131 0.62 79.91 ? H11 GOL 302 A 1 HETATM 8 H H12 GOL . . . C 2 -21.332 -21.976 28.268 0.62 79.91 ? H12 GOL 302 A 1 HETATM 9 H HO1 GOL . . . C 2 -23.185 -23.174 28.878 0.62 79.96 ? HO1 GOL 302 A 1 HETATM 10 H H2 GOL . . . C 2 -22.724 -22.233 25.674 0.62 81.06 ? H2 GOL 302 A 1 HETATM 11 H HO2 GOL . . . C 2 -21.444 -19.775 26.404 0.62 82.76 ? HO2 GOL 302 A 1 HETATM 12 H H31 GOL . . . C 2 -19.931 -22.062 26.718 0.62 84.9 ? H31 GOL 302 A 1 HETATM 13 H H32 GOL . . . C 2 -20.641 -23.191 25.563 0.62 84.9 ? H32 GOL 302 A 1 HETATM 14 H HO3 GOL . . . C 2 -19.122 -21.239 24.911 0.62 84.77 ? HO3 GOL 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #