data_4Y83 # _model_server_result.job_id 9opc37jNlFYRZfwWiOIqHQ _model_server_result.datetime_utc '2025-02-26 08:55:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4Y83 # _exptl.entry_id 4Y83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.356 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2-amino-5-(quinolin-3-yl)pyridin-3-yl]-1,3,4-oxadiazole-2(3H)-thione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4Y83 _cell.length_a 101.952 _cell.length_b 101.952 _cell.length_c 108.315 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C16 H11 N5 O S' _chem_comp.formula_weight 321.356 _chem_comp.id 49B _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2-amino-5-(quinolin-3-yl)pyridin-3-yl]-1,3,4-oxadiazole-2(3H)-thione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 49B doub 1 n y C11 C10 49B sing 2 n y C12 C13 49B sing 3 n y C10 C9 49B doub 4 n y C13 C14 49B doub 5 n y C9 C14 49B sing 6 n y C9 N4 49B sing 7 n y C14 C15 49B sing 8 n y N4 C8 49B doub 9 n y C8 C7 49B sing 10 n y C15 C7 49B doub 11 n y C7 C2 49B sing 12 n n C2 C1 49B doub 13 n y C2 C3 49B sing 14 n y C1 N1 49B sing 15 n y C3 C4 49B doub 16 n y N1 C 49B doub 17 n y C4 C 49B sing 18 n y C4 C5 49B sing 19 n n O C5 49B sing 20 n n O C6 49B sing 21 n n C N 49B sing 22 n n C5 N2 49B doub 23 n n S C6 49B doub 24 n n C6 N3 49B sing 25 n n N2 N3 49B sing 26 n n C1 H1 49B sing 27 n n C3 H2 49B sing 28 n n C11 H3 49B sing 29 n n C12 H4 49B sing 30 n n C13 H5 49B sing 31 n n C15 H6 49B sing 32 n n N3 H7 49B sing 33 n n N H8 49B sing 34 n n N H9 49B sing 35 n n C8 H10 49B sing 36 n n C10 H11 49B sing 37 n n # _atom_sites.entry_id 4Y83 _atom_sites.fract_transf_matrix[1][1] 0.009809 _atom_sites.fract_transf_matrix[1][2] 0.005663 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 49B A 1 401 1 49B LI1 . E 2 49B B 1 401 1 49B LI1 . F 2 49B C 1 401 1 49B LI1 . G 3 HOH A 1 501 107 HOH HOH . G 3 HOH A 2 502 40 HOH HOH . G 3 HOH A 3 503 64 HOH HOH . G 3 HOH A 4 504 13 HOH HOH . G 3 HOH A 5 505 91 HOH HOH . G 3 HOH A 6 506 122 HOH HOH . G 3 HOH A 7 507 56 HOH HOH . G 3 HOH A 8 508 112 HOH HOH . G 3 HOH A 9 509 26 HOH HOH . G 3 HOH A 10 510 163 HOH HOH . G 3 HOH A 11 511 38 HOH HOH . G 3 HOH A 12 512 28 HOH HOH . G 3 HOH A 13 513 159 HOH HOH . G 3 HOH A 14 514 2 HOH HOH . G 3 HOH A 15 515 21 HOH HOH . G 3 HOH A 16 516 147 HOH HOH . G 3 HOH A 17 517 75 HOH HOH . G 3 HOH A 18 518 82 HOH HOH . G 3 HOH A 19 519 25 HOH HOH . G 3 HOH A 20 520 7 HOH HOH . G 3 HOH A 21 521 10 HOH HOH . G 3 HOH A 22 522 27 HOH HOH . G 3 HOH A 23 523 45 HOH HOH . G 3 HOH A 24 524 50 HOH HOH . G 3 HOH A 25 525 57 HOH HOH . G 3 HOH A 26 526 117 HOH HOH . G 3 HOH A 27 527 109 HOH HOH . G 3 HOH A 28 528 141 HOH HOH . G 3 HOH A 29 529 119 HOH HOH . G 3 HOH A 30 530 36 HOH HOH . G 3 HOH A 31 531 87 HOH HOH . G 3 HOH A 32 532 35 HOH HOH . G 3 HOH A 33 533 96 HOH HOH . G 3 HOH A 34 534 79 HOH HOH . G 3 HOH A 35 535 145 HOH HOH . G 3 HOH A 36 536 121 HOH HOH . G 3 HOH A 37 537 30 HOH HOH . G 3 HOH A 38 538 22 HOH HOH . G 3 HOH A 39 539 76 HOH HOH . G 3 HOH A 40 540 136 HOH HOH . G 3 HOH A 41 541 74 HOH HOH . G 3 HOH A 42 542 3 HOH HOH . G 3 HOH A 43 543 98 HOH HOH . G 3 HOH A 44 544 51 HOH HOH . G 3 HOH A 45 545 8 HOH HOH . G 3 HOH A 46 546 73 HOH HOH . G 3 HOH A 47 547 129 HOH HOH . G 3 HOH A 48 548 139 HOH HOH . G 3 HOH A 49 549 130 HOH HOH . G 3 HOH A 50 550 18 HOH HOH . G 3 HOH A 51 551 106 HOH HOH . G 3 HOH A 52 552 100 HOH HOH . G 3 HOH A 53 553 52 HOH HOH . G 3 HOH A 54 554 114 HOH HOH . G 3 HOH A 55 555 160 HOH HOH . G 3 HOH A 56 556 4 HOH HOH . G 3 HOH A 57 557 23 HOH HOH . G 3 HOH A 58 558 54 HOH HOH . G 3 HOH A 59 559 12 HOH HOH . G 3 HOH A 60 560 111 HOH HOH . G 3 HOH A 61 561 81 HOH HOH . G 3 HOH A 62 562 68 HOH HOH . G 3 HOH A 63 563 168 HOH HOH . G 3 HOH A 64 564 144 HOH HOH . G 3 HOH A 65 565 133 HOH HOH . G 3 HOH A 66 566 69 HOH HOH . G 3 HOH A 67 567 59 HOH HOH . G 3 HOH A 68 568 78 HOH HOH . G 3 HOH A 69 569 134 HOH HOH . H 3 HOH B 1 501 162 HOH HOH . H 3 HOH B 2 502 103 HOH HOH . H 3 HOH B 3 503 66 HOH HOH . H 3 HOH B 4 504 29 HOH HOH . H 3 HOH B 5 505 62 HOH HOH . H 3 HOH B 6 506 135 HOH HOH . H 3 HOH B 7 507 39 HOH HOH . H 3 HOH B 8 508 137 HOH HOH . H 3 HOH B 9 509 60 HOH HOH . H 3 HOH B 10 510 89 HOH HOH . H 3 HOH B 11 511 33 HOH HOH . H 3 HOH B 12 512 97 HOH HOH . H 3 HOH B 13 513 32 HOH HOH . H 3 HOH B 14 514 88 HOH HOH . H 3 HOH B 15 515 154 HOH HOH . H 3 HOH B 16 516 42 HOH HOH . H 3 HOH B 17 517 61 HOH HOH . H 3 HOH B 18 518 93 HOH HOH . H 3 HOH B 19 519 131 HOH HOH . H 3 HOH B 20 520 161 HOH HOH . H 3 HOH B 21 521 48 HOH HOH . H 3 HOH B 22 522 9 HOH HOH . H 3 HOH B 23 523 67 HOH HOH . H 3 HOH B 24 524 6 HOH HOH . H 3 HOH B 25 525 118 HOH HOH . H 3 HOH B 26 526 124 HOH HOH . H 3 HOH B 27 527 101 HOH HOH . H 3 HOH B 28 528 1 HOH HOH . H 3 HOH B 29 529 86 HOH HOH . H 3 HOH B 30 530 16 HOH HOH . H 3 HOH B 31 531 41 HOH HOH . H 3 HOH B 32 532 125 HOH HOH . H 3 HOH B 33 533 85 HOH HOH . H 3 HOH B 34 534 123 HOH HOH . H 3 HOH B 35 535 5 HOH HOH . H 3 HOH B 36 536 46 HOH HOH . H 3 HOH B 37 537 115 HOH HOH . H 3 HOH B 38 538 102 HOH HOH . H 3 HOH B 39 539 105 HOH HOH . H 3 HOH B 40 540 94 HOH HOH . H 3 HOH B 41 541 99 HOH HOH . H 3 HOH B 42 542 19 HOH HOH . H 3 HOH B 43 543 17 HOH HOH . H 3 HOH B 44 544 113 HOH HOH . H 3 HOH B 45 545 110 HOH HOH . H 3 HOH B 46 546 83 HOH HOH . H 3 HOH B 47 547 116 HOH HOH . H 3 HOH B 48 548 120 HOH HOH . H 3 HOH B 49 549 167 HOH HOH . H 3 HOH B 50 550 49 HOH HOH . H 3 HOH B 51 551 138 HOH HOH . H 3 HOH B 52 552 155 HOH HOH . H 3 HOH B 53 553 108 HOH HOH . H 3 HOH B 54 554 71 HOH HOH . H 3 HOH B 55 555 126 HOH HOH . H 3 HOH B 56 556 70 HOH HOH . H 3 HOH B 57 557 148 HOH HOH . H 3 HOH B 58 558 152 HOH HOH . H 3 HOH B 59 559 63 HOH HOH . H 3 HOH B 60 560 150 HOH HOH . I 3 HOH C 1 501 77 HOH HOH . I 3 HOH C 2 502 34 HOH HOH . I 3 HOH C 3 503 47 HOH HOH . I 3 HOH C 4 504 15 HOH HOH . I 3 HOH C 5 505 20 HOH HOH . I 3 HOH C 6 506 11 HOH HOH . I 3 HOH C 7 507 127 HOH HOH . I 3 HOH C 8 508 142 HOH HOH . I 3 HOH C 9 509 156 HOH HOH . I 3 HOH C 10 510 166 HOH HOH . I 3 HOH C 11 511 90 HOH HOH . I 3 HOH C 12 512 153 HOH HOH . I 3 HOH C 13 513 43 HOH HOH . I 3 HOH C 14 514 95 HOH HOH . I 3 HOH C 15 515 104 HOH HOH . I 3 HOH C 16 516 53 HOH HOH . I 3 HOH C 17 517 58 HOH HOH . I 3 HOH C 18 518 140 HOH HOH . I 3 HOH C 19 519 165 HOH HOH . I 3 HOH C 20 520 146 HOH HOH . I 3 HOH C 21 521 65 HOH HOH . I 3 HOH C 22 522 143 HOH HOH . I 3 HOH C 23 523 157 HOH HOH . I 3 HOH C 24 524 37 HOH HOH . I 3 HOH C 25 525 55 HOH HOH . I 3 HOH C 26 526 84 HOH HOH . I 3 HOH C 27 527 44 HOH HOH . I 3 HOH C 28 528 31 HOH HOH . I 3 HOH C 29 529 80 HOH HOH . I 3 HOH C 30 530 158 HOH HOH . I 3 HOH C 31 531 151 HOH HOH . I 3 HOH C 32 532 164 HOH HOH . I 3 HOH C 33 533 72 HOH HOH . I 3 HOH C 34 534 92 HOH HOH . I 3 HOH C 35 535 24 HOH HOH . I 3 HOH C 36 536 132 HOH HOH . I 3 HOH C 37 537 149 HOH HOH . I 3 HOH C 38 538 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 49B . . . F 2 7.731 -52.458 -6.77 1 53.64 ? C1 49B 401 C 1 HETATM 2 C C2 49B . . . F 2 8.918 -52.919 -6.177 1 54.22 ? C2 49B 401 C 1 HETATM 3 C C3 49B . . . F 2 9.751 -53.744 -6.956 1 54.71 ? C3 49B 401 C 1 HETATM 4 C C11 49B . . . F 2 9.266 -50.904 0.036 1 59.18 ? C11 49B 401 C 1 HETATM 5 C C12 49B . . . F 2 8.463 -49.991 -0.682 1 59.61 ? C12 49B 401 C 1 HETATM 6 C C13 49B . . . F 2 8.252 -50.166 -2.064 1 58.85 ? C13 49B 401 C 1 HETATM 7 C C14 49B . . . F 2 8.816 -51.281 -2.722 1 58.24 ? C14 49B 401 C 1 HETATM 8 C C15 49B . . . F 2 8.607 -51.514 -4.096 1 57.19 ? C15 49B 401 C 1 HETATM 9 S S 49B . . . F 2 13.245 -57.311 -9.433 1 57.74 ? S 49B 401 C 1 HETATM 10 C C6 49B . . . F 2 11.888 -56.29 -9.559 1 57.38 ? C6 49B 401 C 1 HETATM 11 N N3 49B . . . F 2 11.234 -56.062 -10.655 1 57.89 ? N3 49B 401 C 1 HETATM 12 N N2 49B . . . F 2 10.275 -55.183 -10.321 1 57.08 ? N2 49B 401 C 1 HETATM 13 O O 49B . . . F 2 11.37 -55.63 -8.516 1 56.22 ? O 49B 401 C 1 HETATM 14 C C5 49B . . . F 2 10.372 -54.936 -9.079 1 56.05 ? C5 49B 401 C 1 HETATM 15 C C4 49B . . . F 2 9.447 -54.016 -8.306 1 55.44 ? C4 49B 401 C 1 HETATM 16 C C 49B . . . F 2 8.243 -53.501 -8.845 1 55.22 ? C 49B 401 C 1 HETATM 17 N N 49B . . . F 2 7.827 -53.744 -10.119 1 53.74 ? N 49B 401 C 1 HETATM 18 N N1 49B . . . F 2 7.451 -52.711 -8.07 1 55.1 ? N1 49B 401 C 1 HETATM 19 C C7 49B . . . F 2 9.202 -52.626 -4.738 1 55.31 ? C7 49B 401 C 1 HETATM 20 C C9 49B . . . F 2 9.618 -52.204 -1.999 1 57.26 ? C9 49B 401 C 1 HETATM 21 N N4 49B . . . F 2 10.162 -53.283 -2.627 1 55.21 ? N4 49B 401 C 1 HETATM 22 C C8 49B . . . F 2 9.974 -53.509 -3.952 1 54.33 ? C8 49B 401 C 1 HETATM 23 C C10 49B . . . F 2 9.85 -52.005 -0.623 1 57.99 ? C10 49B 401 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #