data_4Y87 # _model_server_result.job_id qirJ11XFlxZWSz48mXemRA _model_server_result.datetime_utc '2024-11-15 08:26:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4Y87 # _exptl.entry_id 4Y87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.837 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(1R)-1-(4-chlorophenyl)ethyl]amino}-1-cyclopentyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y87 _cell.length_a 105.436 _cell.length_b 105.436 _cell.length_c 270.056 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 256 A HIS 256 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 A NE2 HIS 292 A HIS 292 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 A OD2 ASP 293 A ASP 293 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A OD1 ASP 293 A ASP 293 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc5 A OD1 ASP 402 A ASP 402 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc6 D ZN ZN . A ZN 602 1_555 I O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc7 E MG MG . A MG 603 1_555 I O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc8 E MG MG . A MG 603 1_555 I O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc9 E MG MG . A MG 603 1_555 I O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc10 E MG MG . A MG 603 1_555 I O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc11 E MG MG . A MG 603 1_555 I O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc12 B NE2 HIS 256 B HIS 256 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc13 B NE2 HIS 292 B HIS 292 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc14 B OD2 ASP 293 B ASP 293 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc15 B OD1 ASP 293 B ASP 293 1_555 H MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc16 B OD1 ASP 402 B ASP 402 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc17 H MG MG . B MG 603 1_555 J O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc18 H MG MG . B MG 603 1_555 J O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc19 H MG MG . B MG 603 1_555 J O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc20 H MG MG . B MG 603 1_555 J O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C18 H20 Cl N5 O' _chem_comp.formula_weight 357.837 _chem_comp.id 49E _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(1R)-1-(4-chlorophenyl)ethyl]amino}-1-cyclopentyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C27 49E sing 1 n n C27 C26 49E doub 2 n y C27 C28 49E sing 3 n y C26 C25 49E sing 4 n y C28 C29 49E doub 5 n y C25 C24 49E doub 6 n y C2 C1 49E sing 7 n n C2 C3 49E sing 8 n n C29 C24 49E sing 9 n y C1 C4 49E sing 10 n n C24 C19 49E sing 11 n n C4 C5 49E sing 12 n n C20 C19 49E sing 13 n n C19 N18 49E sing 14 n n C5 C3 49E sing 15 n n C5 N8 49E sing 16 n n N13 C11 49E sing 17 n n N13 C14 49E doub 18 n n N18 C14 49E sing 19 n n N8 C11 49E sing 20 n y N8 N9 49E sing 21 n y C11 C12 49E doub 22 n y C14 N15 49E sing 23 n n N9 C10 49E doub 24 n y C12 C10 49E sing 25 n y C12 C16 49E sing 26 n n N15 C16 49E sing 27 n n C16 O17 49E doub 28 n n C2 H1 49E sing 29 n n C2 H2 49E sing 30 n n C3 H3 49E sing 31 n n C3 H4 49E sing 32 n n C4 H5 49E sing 33 n n C4 H6 49E sing 34 n n C5 H7 49E sing 35 n n C10 H8 49E sing 36 n n N15 H9 49E sing 37 n n N18 H10 49E sing 38 n n C19 H11 49E sing 39 n n C20 H12 49E sing 40 n n C20 H13 49E sing 41 n n C20 H14 49E sing 42 n n C29 H15 49E sing 43 n n C28 H16 49E sing 44 n n C26 H17 49E sing 45 n n C25 H18 49E sing 46 n n C1 H19 49E sing 47 n n C1 H20 49E sing 48 n n # _atom_sites.entry_id 4Y87 _atom_sites.fract_transf_matrix[1][1] 0.009484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 49E A 1 601 900 49E R33 . D 3 ZN A 1 602 101 ZN ZN . E 4 MG A 1 603 102 MG MG . F 2 49E B 1 601 900 49E R33 . G 3 ZN B 1 602 101 ZN ZN . H 4 MG B 1 603 102 MG MG . I 5 HOH A 1 701 1 HOH HOH . I 5 HOH A 2 702 2 HOH HOH . I 5 HOH A 3 703 3 HOH HOH . I 5 HOH A 4 704 4 HOH HOH . I 5 HOH A 5 705 5 HOH HOH . I 5 HOH A 6 706 6 HOH HOH . J 5 HOH B 1 701 11 HOH HOH . J 5 HOH B 2 702 12 HOH HOH . J 5 HOH B 3 703 13 HOH HOH . J 5 HOH B 4 704 14 HOH HOH . J 5 HOH B 5 705 15 HOH HOH . J 5 HOH B 6 706 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 49E . . . C 2 82.628 51.132 39.564 1 60.91 ? C2 49E 601 A 1 HETATM 2 C C3 49E . . . C 2 82.042 52.086 40.554 1 62.26 ? C3 49E 601 A 1 HETATM 3 C C4 49E . . . C 2 80.752 50.05 40.312 1 61.98 ? C4 49E 601 A 1 HETATM 4 C C5 49E . . . C 2 80.654 51.507 40.813 1 60.97 ? C5 49E 601 A 1 HETATM 5 N N8 49E . . . C 2 80.265 51.635 42.267 1 59.3 ? N8 49E 601 A 1 HETATM 6 C C11 49E . . . C 2 79.219 52.323 42.713 1 56.97 ? C11 49E 601 A 1 HETATM 7 N N13 49E . . . C 2 78.286 53.02 42.062 1 56.17 ? N13 49E 601 A 1 HETATM 8 N N9 49E . . . C 2 80.863 51.151 43.218 1 58.05 ? N9 49E 601 A 1 HETATM 9 C C10 49E . . . C 2 80.256 51.479 44.352 1 58.59 ? C10 49E 601 A 1 HETATM 10 C C12 49E . . . C 2 79.203 52.229 44.044 1 58.47 ? C12 49E 601 A 1 HETATM 11 C C16 49E . . . C 2 78.247 52.827 44.786 1 58.2 ? C16 49E 601 A 1 HETATM 12 O O17 49E . . . C 2 78.218 52.746 46.023 1 59.63 ? O17 49E 601 A 1 HETATM 13 N N15 49E . . . C 2 77.261 53.561 44.12 1 56.5 ? N15 49E 601 A 1 HETATM 14 C C14 49E . . . C 2 77.307 53.647 42.731 1 58.61 ? C14 49E 601 A 1 HETATM 15 N N18 49E . . . C 2 76.389 54.356 42.085 1 63.03 ? N18 49E 601 A 1 HETATM 16 C C19 49E . . . C 2 76.527 54.684 40.649 1 67.33 ? C19 49E 601 A 1 HETATM 17 C C20 49E . . . C 2 76.008 56.094 40.375 1 64.96 ? C20 49E 601 A 1 HETATM 18 C C24 49E . . . C 2 75.817 53.704 39.942 1 75.66 ? C24 49E 601 A 1 HETATM 19 C C29 49E . . . C 2 74.45 53.539 40.187 1 77.52 ? C29 49E 601 A 1 HETATM 20 C C28 49E . . . C 2 73.739 52.556 39.519 1 80.93 ? C28 49E 601 A 1 HETATM 21 C C27 49E . . . C 2 74.404 51.732 38.615 1 87.23 ? C27 49E 601 A 1 HETATM 22 C C26 49E . . . C 2 75.77 51.872 38.357 1 84.3 ? C26 49E 601 A 1 HETATM 23 C C25 49E . . . C 2 76.478 52.862 39.03 1 82.18 ? C25 49E 601 A 1 HETATM 24 C C1 49E . . . C 2 82.219 49.817 40.163 1 61.62 ? C1 49E 601 A 1 HETATM 25 CL CL 49E . . . C 2 73.525 50.556 37.829 1 100.69 ? CL 49E 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #