data_4Y88 # _model_server_result.job_id CMY1Q5HuG0jacJz7m3R8eA _model_server_result.datetime_utc '2025-08-01 00:05:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4Y88 # _exptl.entry_id 4Y88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y88 _cell.length_a 94.336 _cell.length_b 94.336 _cell.length_c 94.336 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4Y88 _atom_sites.fract_transf_matrix[1][1] 0.0106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 3 GOL GOL . E 4 CL A 1 204 1 CL CL . F 4 CL A 1 205 2 CL CL . G 2 SO4 A 1 206 1 SO4 SO4 . H 5 PDO A 1 207 1 PDO PDO . I 6 HOH A 1 301 36 HOH HOH . I 6 HOH A 2 302 90 HOH HOH . I 6 HOH A 3 303 79 HOH HOH . I 6 HOH A 4 304 57 HOH HOH . I 6 HOH A 5 305 92 HOH HOH . I 6 HOH A 6 306 12 HOH HOH . I 6 HOH A 7 307 82 HOH HOH . I 6 HOH A 8 308 4 HOH HOH . I 6 HOH A 9 309 21 HOH HOH . I 6 HOH A 10 310 55 HOH HOH . I 6 HOH A 11 311 97 HOH HOH . I 6 HOH A 12 312 47 HOH HOH . I 6 HOH A 13 313 1 HOH HOH . I 6 HOH A 14 314 9 HOH HOH . I 6 HOH A 15 315 61 HOH HOH . I 6 HOH A 16 316 15 HOH HOH . I 6 HOH A 17 317 45 HOH HOH . I 6 HOH A 18 318 32 HOH HOH . I 6 HOH A 19 319 50 HOH HOH . I 6 HOH A 20 320 111 HOH HOH . I 6 HOH A 21 321 22 HOH HOH . I 6 HOH A 22 322 85 HOH HOH . I 6 HOH A 23 323 14 HOH HOH . I 6 HOH A 24 324 42 HOH HOH . I 6 HOH A 25 325 23 HOH HOH . I 6 HOH A 26 326 17 HOH HOH . I 6 HOH A 27 327 43 HOH HOH . I 6 HOH A 28 328 41 HOH HOH . I 6 HOH A 29 329 44 HOH HOH . I 6 HOH A 30 330 11 HOH HOH . I 6 HOH A 31 331 40 HOH HOH . I 6 HOH A 32 332 60 HOH HOH . I 6 HOH A 33 333 83 HOH HOH . I 6 HOH A 34 334 30 HOH HOH . I 6 HOH A 35 335 110 HOH HOH . I 6 HOH A 36 336 98 HOH HOH . I 6 HOH A 37 337 20 HOH HOH . I 6 HOH A 38 338 24 HOH HOH . I 6 HOH A 39 339 52 HOH HOH . I 6 HOH A 40 340 107 HOH HOH . I 6 HOH A 41 341 77 HOH HOH . I 6 HOH A 42 342 104 HOH HOH . I 6 HOH A 43 343 89 HOH HOH . I 6 HOH A 44 344 6 HOH HOH . I 6 HOH A 45 345 68 HOH HOH . I 6 HOH A 46 346 51 HOH HOH . I 6 HOH A 47 347 10 HOH HOH . I 6 HOH A 48 348 66 HOH HOH . I 6 HOH A 49 349 59 HOH HOH . I 6 HOH A 50 350 63 HOH HOH . I 6 HOH A 51 351 33 HOH HOH . I 6 HOH A 52 352 5 HOH HOH . I 6 HOH A 53 353 100 HOH HOH . I 6 HOH A 54 354 65 HOH HOH . I 6 HOH A 55 355 3 HOH HOH . I 6 HOH A 56 356 113 HOH HOH . I 6 HOH A 57 357 64 HOH HOH . I 6 HOH A 58 358 115 HOH HOH . I 6 HOH A 59 359 91 HOH HOH . I 6 HOH A 60 360 105 HOH HOH . I 6 HOH A 61 361 2 HOH HOH . I 6 HOH A 62 362 7 HOH HOH . I 6 HOH A 63 363 8 HOH HOH . I 6 HOH A 64 364 13 HOH HOH . I 6 HOH A 65 365 16 HOH HOH . I 6 HOH A 66 366 18 HOH HOH . I 6 HOH A 67 367 19 HOH HOH . I 6 HOH A 68 368 25 HOH HOH . I 6 HOH A 69 369 26 HOH HOH . I 6 HOH A 70 370 27 HOH HOH . I 6 HOH A 71 371 28 HOH HOH . I 6 HOH A 72 372 29 HOH HOH . I 6 HOH A 73 373 31 HOH HOH . I 6 HOH A 74 374 34 HOH HOH . I 6 HOH A 75 375 35 HOH HOH . I 6 HOH A 76 376 37 HOH HOH . I 6 HOH A 77 377 38 HOH HOH . I 6 HOH A 78 378 39 HOH HOH . I 6 HOH A 79 379 46 HOH HOH . I 6 HOH A 80 380 48 HOH HOH . I 6 HOH A 81 381 49 HOH HOH . I 6 HOH A 82 382 53 HOH HOH . I 6 HOH A 83 383 54 HOH HOH . I 6 HOH A 84 384 56 HOH HOH . I 6 HOH A 85 385 58 HOH HOH . I 6 HOH A 86 386 62 HOH HOH . I 6 HOH A 87 387 69 HOH HOH . I 6 HOH A 88 388 70 HOH HOH . I 6 HOH A 89 389 71 HOH HOH . I 6 HOH A 90 390 72 HOH HOH . I 6 HOH A 91 391 73 HOH HOH . I 6 HOH A 92 392 74 HOH HOH . I 6 HOH A 93 393 75 HOH HOH . I 6 HOH A 94 394 76 HOH HOH . I 6 HOH A 95 395 78 HOH HOH . I 6 HOH A 96 396 80 HOH HOH . I 6 HOH A 97 397 81 HOH HOH . I 6 HOH A 98 398 84 HOH HOH . I 6 HOH A 99 399 86 HOH HOH . I 6 HOH A 100 400 87 HOH HOH . I 6 HOH A 101 401 88 HOH HOH . I 6 HOH A 102 402 93 HOH HOH . I 6 HOH A 103 403 94 HOH HOH . I 6 HOH A 104 404 95 HOH HOH . I 6 HOH A 105 405 96 HOH HOH . I 6 HOH A 106 406 99 HOH HOH . I 6 HOH A 107 407 101 HOH HOH . I 6 HOH A 108 408 102 HOH HOH . I 6 HOH A 109 409 103 HOH HOH . I 6 HOH A 110 410 106 HOH HOH . I 6 HOH A 111 411 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 13.651 -13.589 10.572 1 36.92 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 3 12.59 -12.982 9.85 1 49.34 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 3 14.041 -12.623 11.666 1 38.67 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 3 13.025 -11.66 11.96 1 47.13 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 3 14.401 -13.409 12.911 1 45.21 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 3 15.763 -13.798 12.773 1 41.61 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 1278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #