data_4Y8C # _model_server_result.job_id 2mV3WgIvv1J8hNGs1I1gKw _model_server_result.datetime_utc '2024-11-24 06:12:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4Y8C # _exptl.entry_id 4Y8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.837 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(1S)-1-(4-chlorophenyl)ethyl]amino}-1-cyclopentyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y8C _cell.length_a 104.719 _cell.length_b 104.719 _cell.length_c 270.274 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 256 A HIS 256 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc2 A NE2 HIS 292 A HIS 292 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 A OD2 ASP 293 A ASP 293 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 A OD1 ASP 293 A ASP 293 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 A OD1 ASP 402 A ASP 402 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 D ZN ZN . A ZN 602 1_555 I O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc7 D ZN ZN . A ZN 602 1_555 I O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 E MG MG . A MG 603 1_555 I O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? metalc ? metalc9 E MG MG . A MG 603 1_555 I O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc10 E MG MG . A MG 603 1_555 I O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc11 E MG MG . A MG 603 1_555 I O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc12 E MG MG . A MG 603 1_555 I O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc13 B NE2 HIS 256 B HIS 256 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc14 B NE2 HIS 292 B HIS 292 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc15 B OD2 ASP 293 B ASP 293 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc16 B OD1 ASP 293 B ASP 293 1_555 H MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc17 B OD1 ASP 402 B ASP 402 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc18 G ZN ZN . B ZN 602 1_555 J O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc19 H MG MG . B MG 603 1_555 J O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc20 H MG MG . B MG 603 1_555 J O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc21 H MG MG . B MG 603 1_555 J O HOH . B HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc22 H MG MG . B MG 603 1_555 J O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc23 H MG MG . B MG 603 1_555 J O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C18 H20 Cl N5 O' _chem_comp.formula_weight 357.837 _chem_comp.id 49D _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(1S)-1-(4-chlorophenyl)ethyl]amino}-1-cyclopentyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C27 49D sing 1 n n C2 C1 49D sing 2 n n C2 C3 49D sing 3 n n C28 C27 49D doub 4 n y C28 C29 49D sing 5 n y C27 C26 49D sing 6 n y C29 C24 49D doub 7 n y C26 C25 49D doub 8 n y C20 C19 49D sing 9 n n C1 C4 49D sing 10 n n C24 C25 49D sing 11 n y C24 C19 49D sing 12 n n C4 C5 49D sing 13 n n C19 N18 49D sing 14 n n C3 C5 49D sing 15 n n C5 N8 49D sing 16 n n N18 C14 49D sing 17 n n N13 C14 49D doub 18 n n N13 C11 49D sing 19 n n N8 C11 49D sing 20 n y N8 N9 49D sing 21 n y C14 N15 49D sing 22 n n C11 C12 49D doub 23 n y N9 C10 49D doub 24 n y N15 C16 49D sing 25 n n C12 C10 49D sing 26 n y C12 C16 49D sing 27 n n C16 O17 49D doub 28 n n C2 H1 49D sing 29 n n C2 H2 49D sing 30 n n C3 H3 49D sing 31 n n C3 H4 49D sing 32 n n C4 H5 49D sing 33 n n C4 H6 49D sing 34 n n C5 H7 49D sing 35 n n C10 H8 49D sing 36 n n N15 H9 49D sing 37 n n N18 H10 49D sing 38 n n C19 H11 49D sing 39 n n C20 H12 49D sing 40 n n C20 H13 49D sing 41 n n C20 H14 49D sing 42 n n C29 H15 49D sing 43 n n C28 H16 49D sing 44 n n C26 H17 49D sing 45 n n C25 H18 49D sing 46 n n C1 H19 49D sing 47 n n C1 H20 49D sing 48 n n # _atom_sites.entry_id 4Y8C _atom_sites.fract_transf_matrix[1][1] 0.009549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 49D A 1 601 1 49D LUO . D 3 ZN A 1 602 101 ZN ZN . E 4 MG A 1 603 102 MG MG . F 2 49D B 1 601 1 49D LUO . G 3 ZN B 1 602 101 ZN ZN . H 4 MG B 1 603 102 MG MG . I 5 HOH A 1 701 1 HOH HOH . I 5 HOH A 2 702 2 HOH HOH . I 5 HOH A 3 703 3 HOH HOH . I 5 HOH A 4 704 4 HOH HOH . I 5 HOH A 5 705 5 HOH HOH . I 5 HOH A 6 706 6 HOH HOH . J 5 HOH B 1 701 11 HOH HOH . J 5 HOH B 2 702 12 HOH HOH . J 5 HOH B 3 703 13 HOH HOH . J 5 HOH B 4 704 14 HOH HOH . J 5 HOH B 5 705 15 HOH HOH . J 5 HOH B 6 706 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 49D . . . C 2 81.346 50.717 39.489 1 41.12 ? C2 49D 601 A 1 HETATM 2 C C3 49D . . . C 2 81.052 51.697 40.581 1 39.37 ? C3 49D 601 A 1 HETATM 3 C C4 49D . . . C 2 79.339 49.976 40.273 1 39.62 ? C4 49D 601 A 1 HETATM 4 C C5 49D . . . C 2 79.554 51.368 40.808 1 37.35 ? C5 49D 601 A 1 HETATM 5 N N8 49D . . . C 2 79.221 51.518 42.254 1 35.42 ? N8 49D 601 A 1 HETATM 6 C C11 49D . . . C 2 78.146 52.199 42.662 1 33.78 ? C11 49D 601 A 1 HETATM 7 N N13 49D . . . C 2 77.175 52.811 41.959 1 32.66 ? N13 49D 601 A 1 HETATM 8 N N9 49D . . . C 2 79.874 51.114 43.281 1 33.78 ? N9 49D 601 A 1 HETATM 9 C C10 49D . . . C 2 79.229 51.512 44.378 1 32.2 ? C10 49D 601 A 1 HETATM 10 C C12 49D . . . C 2 78.14 52.195 44 1 32.79 ? C12 49D 601 A 1 HETATM 11 C C16 49D . . . C 2 77.147 52.811 44.679 1 31.91 ? C16 49D 601 A 1 HETATM 12 O O17 49D . . . C 2 77.102 52.837 45.912 1 31.66 ? O17 49D 601 A 1 HETATM 13 N N15 49D . . . C 2 76.13 53.443 43.965 1 31.94 ? N15 49D 601 A 1 HETATM 14 C C14 49D . . . C 2 76.165 53.431 42.574 1 32.31 ? C14 49D 601 A 1 HETATM 15 N N18 49D . . . C 2 75.205 54.033 41.89 1 33.07 ? N18 49D 601 A 1 HETATM 16 C C19 49D . . . C 2 75.242 54.156 40.42 1 34.11 ? C19 49D 601 A 1 HETATM 17 C C20 49D . . . C 2 73.854 53.81 39.852 1 34.05 ? C20 49D 601 A 1 HETATM 18 C C24 49D . . . C 2 75.652 55.46 40.122 1 34.26 ? C24 49D 601 A 1 HETATM 19 C C29 49D . . . C 2 77.001 55.712 39.878 1 34.96 ? C29 49D 601 A 1 HETATM 20 C C28 49D . . . C 2 77.44 57.005 39.603 1 34.77 ? C28 49D 601 A 1 HETATM 21 C C27 49D . . . C 2 76.534 58.064 39.573 1 34.4 ? C27 49D 601 A 1 HETATM 22 C C26 49D . . . C 2 75.193 57.824 39.82 1 33.45 ? C26 49D 601 A 1 HETATM 23 C C25 49D . . . C 2 74.755 56.53 40.101 1 34 ? C25 49D 601 A 1 HETATM 24 C C1 49D . . . C 2 80.723 49.412 40.004 1 41.23 ? C1 49D 601 A 1 HETATM 25 CL CL 49D . . . C 2 77.071 59.67 39.234 1 34.72 ? CL 49D 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #