data_4Y8U # _model_server_result.job_id ALOe8FAmJdv-06maz9Dj6Q _model_server_result.datetime_utc '2024-11-14 17:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":301}' # _entry.id 4Y8U # _exptl.entry_id 4Y8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.16 _cell.angle_gamma 90 _cell.entry_id 4Y8U _cell.length_a 137.12 _cell.length_b 302 _cell.length_c 145.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 30-meric _pdbx_struct_assembly.oligomeric_count 30 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 EA N N ? 16 GA N N ? 16 HA N N ? 16 IA N N ? 16 JA N N ? 16 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 N OG1 THR 1 N THR 1 1_555 CA C ASJ 4 1 ASJ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 N N THR 1 N THR 1 1_555 CA C2 POL 5 1 POL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale3 BA OG1 THR 1 b THR 1 1_555 DA C ASJ 4 2 ASJ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 BA N THR 1 b THR 1 1_555 DA C2 POL 5 2 POL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale5 CA C ACE 1 1 ACE 1 1_555 CA N PRO 2 1 PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale6 CA C ALA 3 1 ALA 3 1_555 CA N ASJ 4 1 ASJ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale7 CA C ASJ 4 1 ASJ 4 1_555 CA C2 POL 5 1 POL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? covale ? covale8 DA C ACE 1 2 ACE 1 1_555 DA N PRO 2 2 PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale9 DA C ALA 3 2 ALA 3 1_555 DA N ASJ 4 2 ASJ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale10 DA C ASJ 4 2 ASJ 4 1_555 DA C2 POL 5 2 POL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? metalc ? metalc1 G OG1 THR 17 G THR 8 1_555 EA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc2 G O TYR 128 G TYR 119 1_555 EA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc3 G O ARG 131 G ARG 122 1_555 EA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc4 G O MET 134 G MET 125 1_555 EA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc5 I O ASP 205 I ASP 204 1_555 GA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 GA MG MG . I MG 301 1_555 Y O ALA 165 Y ALA 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc7 GA MG MG . I MG 301 1_555 Y O ASP 168 Y ASP 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 GA MG MG . I MG 301 1_555 Y O SER 171 Y SER 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc9 K O ALA 165 K ALA 165 1_555 HA MG MG . K MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc10 K O ASP 168 K ASP 168 1_555 HA MG MG . K MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc11 K O SER 171 K SER 171 1_555 HA MG MG . K MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc12 HA MG MG . K MG 301 1_555 W O ASP 205 W ASP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc13 L OXT ASP 222 L ASP 222 1_555 IA MG MG . L MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc14 IA MG MG . L MG 301 1_555 V O ILE 163 V ILE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc15 IA MG MG . L MG 301 1_555 V O ASP 166 V ASP 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc16 IA MG MG . L MG 301 1_555 V O SER 169 V SER 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc17 N O SER 169 N SER 169 1_555 JA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc18 Z O THR 192 Z THR 192 1_555 KA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc19 Z O VAL 198 Z VAL 198 1_555 KA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4Y8U _atom_sites.fract_transf_matrix[1][1] 0.007293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003119 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code EA 16 MG G 1 301 6 MG MG . FA 17 CL G 1 302 1 CL CL . GA 16 MG I 1 301 4 MG MG . HA 16 MG K 1 301 1 MG MG . IA 16 MG L 1 301 2 MG MG . JA 16 MG N 1 201 5 MG MG . KA 16 MG Z 1 301 3 MG MG . LA 18 HOH A 1 301 109 HOH HOH . LA 18 HOH A 2 302 89 HOH HOH . LA 18 HOH A 3 303 57 HOH HOH . LA 18 HOH A 4 304 74 HOH HOH . LA 18 HOH A 5 305 145 HOH HOH . MA 18 HOH B 1 301 75 HOH HOH . MA 18 HOH B 2 302 103 HOH HOH . MA 18 HOH B 3 303 114 HOH HOH . MA 18 HOH B 4 304 110 HOH HOH . MA 18 HOH B 5 305 116 HOH HOH . MA 18 HOH B 6 306 134 HOH HOH . NA 18 HOH C 1 301 59 HOH HOH . NA 18 HOH C 2 302 44 HOH HOH . NA 18 HOH C 3 303 55 HOH HOH . NA 18 HOH C 4 304 71 HOH HOH . NA 18 HOH C 5 305 118 HOH HOH . OA 18 HOH D 1 301 69 HOH HOH . OA 18 HOH D 2 302 175 HOH HOH . OA 18 HOH D 3 303 176 HOH HOH . PA 18 HOH E 1 301 68 HOH HOH . PA 18 HOH E 2 302 142 HOH HOH . PA 18 HOH E 3 303 12 HOH HOH . QA 18 HOH F 1 301 58 HOH HOH . QA 18 HOH F 2 302 86 HOH HOH . QA 18 HOH F 3 303 92 HOH HOH . RA 18 HOH G 1 401 56 HOH HOH . RA 18 HOH G 2 402 36 HOH HOH . RA 18 HOH G 3 403 63 HOH HOH . RA 18 HOH G 4 404 3 HOH HOH . RA 18 HOH G 5 405 108 HOH HOH . SA 18 HOH H 1 301 4 HOH HOH . SA 18 HOH H 2 302 174 HOH HOH . SA 18 HOH H 3 303 96 HOH HOH . SA 18 HOH H 4 304 126 HOH HOH . SA 18 HOH H 5 305 39 HOH HOH . SA 18 HOH H 6 306 171 HOH HOH . SA 18 HOH H 7 307 148 HOH HOH . SA 18 HOH H 8 308 125 HOH HOH . SA 18 HOH H 9 309 129 HOH HOH . SA 18 HOH H 10 310 161 HOH HOH . SA 18 HOH H 11 311 136 HOH HOH . TA 18 HOH I 1 401 26 HOH HOH . TA 18 HOH I 2 402 185 HOH HOH . UA 18 HOH J 1 201 98 HOH HOH . UA 18 HOH J 2 202 32 HOH HOH . UA 18 HOH J 3 203 28 HOH HOH . UA 18 HOH J 4 204 30 HOH HOH . UA 18 HOH J 5 205 122 HOH HOH . UA 18 HOH J 6 206 150 HOH HOH . UA 18 HOH J 7 207 21 HOH HOH . UA 18 HOH J 8 208 113 HOH HOH . UA 18 HOH J 9 209 24 HOH HOH . VA 18 HOH K 1 401 138 HOH HOH . VA 18 HOH K 2 402 107 HOH HOH . VA 18 HOH K 3 403 43 HOH HOH . VA 18 HOH K 4 404 131 HOH HOH . VA 18 HOH K 5 405 37 HOH HOH . VA 18 HOH K 6 406 91 HOH HOH . VA 18 HOH K 7 407 102 HOH HOH . VA 18 HOH K 8 408 179 HOH HOH . WA 18 HOH L 1 401 162 HOH HOH . WA 18 HOH L 2 402 35 HOH HOH . WA 18 HOH L 3 403 180 HOH HOH . WA 18 HOH L 4 404 133 HOH HOH . WA 18 HOH L 5 405 67 HOH HOH . WA 18 HOH L 6 406 93 HOH HOH . WA 18 HOH L 7 407 95 HOH HOH . WA 18 HOH L 8 408 49 HOH HOH . XA 18 HOH M 1 301 177 HOH HOH . XA 18 HOH M 2 302 139 HOH HOH . XA 18 HOH M 3 303 76 HOH HOH . XA 18 HOH M 4 304 38 HOH HOH . XA 18 HOH M 5 305 79 HOH HOH . XA 18 HOH M 6 306 20 HOH HOH . XA 18 HOH M 7 307 90 HOH HOH . XA 18 HOH M 8 308 168 HOH HOH . XA 18 HOH M 9 309 184 HOH HOH . YA 18 HOH N 1 301 81 HOH HOH . YA 18 HOH N 2 302 33 HOH HOH . YA 18 HOH N 3 303 47 HOH HOH . YA 18 HOH N 4 304 72 HOH HOH . YA 18 HOH N 5 305 170 HOH HOH . YA 18 HOH N 6 306 54 HOH HOH . YA 18 HOH N 7 307 101 HOH HOH . YA 18 HOH N 8 308 178 HOH HOH . ZA 18 HOH O 1 301 6 HOH HOH . AB 18 HOH P 1 301 5 HOH HOH . AB 18 HOH P 2 302 130 HOH HOH . AB 18 HOH P 3 303 100 HOH HOH . AB 18 HOH P 4 304 169 HOH HOH . AB 18 HOH P 5 305 97 HOH HOH . BB 18 HOH Q 1 301 99 HOH HOH . BB 18 HOH Q 2 302 73 HOH HOH . BB 18 HOH Q 3 303 78 HOH HOH . BB 18 HOH Q 4 304 135 HOH HOH . BB 18 HOH Q 5 305 105 HOH HOH . BB 18 HOH Q 6 306 167 HOH HOH . BB 18 HOH Q 7 307 117 HOH HOH . BB 18 HOH Q 8 308 123 HOH HOH . BB 18 HOH Q 9 309 77 HOH HOH . BB 18 HOH Q 10 310 183 HOH HOH . CB 18 HOH R 1 301 7 HOH HOH . CB 18 HOH R 2 302 143 HOH HOH . DB 18 HOH S 1 301 65 HOH HOH . DB 18 HOH S 2 302 173 HOH HOH . EB 18 HOH T 1 301 8 HOH HOH . EB 18 HOH T 2 302 45 HOH HOH . EB 18 HOH T 3 303 82 HOH HOH . EB 18 HOH T 4 304 83 HOH HOH . EB 18 HOH T 5 305 158 HOH HOH . FB 18 HOH U 1 301 62 HOH HOH . FB 18 HOH U 2 302 34 HOH HOH . FB 18 HOH U 3 303 51 HOH HOH . FB 18 HOH U 4 304 127 HOH HOH . FB 18 HOH U 5 305 17 HOH HOH . FB 18 HOH U 6 306 155 HOH HOH . FB 18 HOH U 7 307 146 HOH HOH . FB 18 HOH U 8 308 119 HOH HOH . FB 18 HOH U 9 309 111 HOH HOH . FB 18 HOH U 10 310 94 HOH HOH . GB 18 HOH V 1 401 2 HOH HOH . GB 18 HOH V 2 402 104 HOH HOH . GB 18 HOH V 3 403 154 HOH HOH . GB 18 HOH V 4 404 9 HOH HOH . GB 18 HOH V 5 405 52 HOH HOH . GB 18 HOH V 6 406 112 HOH HOH . GB 18 HOH V 7 407 60 HOH HOH . GB 18 HOH V 8 408 10 HOH HOH . GB 18 HOH V 9 409 18 HOH HOH . GB 18 HOH V 10 410 165 HOH HOH . HB 18 HOH W 1 301 66 HOH HOH . HB 18 HOH W 2 302 156 HOH HOH . IB 18 HOH X 1 201 121 HOH HOH . IB 18 HOH X 2 202 31 HOH HOH . IB 18 HOH X 3 203 46 HOH HOH . IB 18 HOH X 4 204 181 HOH HOH . IB 18 HOH X 5 205 13 HOH HOH . IB 18 HOH X 6 206 15 HOH HOH . IB 18 HOH X 7 207 11 HOH HOH . IB 18 HOH X 8 208 61 HOH HOH . IB 18 HOH X 9 209 159 HOH HOH . IB 18 HOH X 10 210 157 HOH HOH . JB 18 HOH Y 1 301 132 HOH HOH . JB 18 HOH Y 2 302 128 HOH HOH . JB 18 HOH Y 3 303 25 HOH HOH . JB 18 HOH Y 4 304 151 HOH HOH . JB 18 HOH Y 5 305 124 HOH HOH . JB 18 HOH Y 6 306 23 HOH HOH . JB 18 HOH Y 7 307 22 HOH HOH . JB 18 HOH Y 8 308 137 HOH HOH . JB 18 HOH Y 9 309 160 HOH HOH . JB 18 HOH Y 10 310 53 HOH HOH . JB 18 HOH Y 11 311 141 HOH HOH . JB 18 HOH Y 12 312 172 HOH HOH . JB 18 HOH Y 13 313 50 HOH HOH . KB 18 HOH Z 1 401 88 HOH HOH . KB 18 HOH Z 2 402 140 HOH HOH . KB 18 HOH Z 3 403 70 HOH HOH . KB 18 HOH Z 4 404 153 HOH HOH . KB 18 HOH Z 5 405 182 HOH HOH . KB 18 HOH Z 6 406 163 HOH HOH . KB 18 HOH Z 7 407 87 HOH HOH . KB 18 HOH Z 8 408 64 HOH HOH . KB 18 HOH Z 9 409 144 HOH HOH . KB 18 HOH Z 10 410 48 HOH HOH . KB 18 HOH Z 11 411 149 HOH HOH . LB 18 HOH a 1 301 164 HOH HOH . LB 18 HOH a 2 302 16 HOH HOH . LB 18 HOH a 3 303 85 HOH HOH . LB 18 HOH a 4 304 19 HOH HOH . LB 18 HOH a 5 305 84 HOH HOH . LB 18 HOH a 6 306 152 HOH HOH . LB 18 HOH a 7 307 42 HOH HOH . LB 18 HOH a 8 308 106 HOH HOH . LB 18 HOH a 9 309 147 HOH HOH . LB 18 HOH a 10 310 115 HOH HOH . MB 18 HOH b 1 201 120 HOH HOH . MB 18 HOH b 2 202 27 HOH HOH . MB 18 HOH b 3 203 166 HOH HOH . MB 18 HOH b 4 204 29 HOH HOH . MB 18 HOH b 5 205 80 HOH HOH . MB 18 HOH b 6 206 40 HOH HOH . NB 18 HOH 1 1 101 41 HOH HOH . OB 18 HOH 2 1 101 14 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id GA _atom_site.label_entity_id 16 _atom_site.Cartn_x 62.015 _atom_site.Cartn_y -145.175 _atom_site.Cartn_z 6.87 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #